mRNA_H-canaliculatus_M_contigs7733.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7733.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7733.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: UBC (core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.350e-41
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 201
            YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA
Sbjct:   51 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 117
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Ubiquitin-conjugating (enzyme n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LRK7_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 6.180e-30
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 201
            YEGLTY+L L FP  YP+KAP + FET CFHPNVD HGNICLDILKEKWS+A+SV T+LQS++SLLA
Sbjct:   72 YEGLTYRLSLAFPSDYPFKAPTVRFETKCFHPNVDLHGNICLDILKEKWSAAYSVLTVLQSIQSLLA 138
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7L5_9VIRI)

HSP 1 Score: 113 bits (282), Expect = 6.260e-30
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLL 198
            YEGLT+KL+L FP+ YPYKAP +TFETPCFHPNVD+ GNICLDILKEKWSSA+ V T+L S++SLL
Sbjct:   99 YEGLTFKLRLKFPNDYPYKAPQVTFETPCFHPNVDQFGNICLDILKEKWSSAYDVRTVLLSIQSLL 164
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Ubiquitin-conjugating (enzyme E2 C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGQ9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.480e-29
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 201
            YEGL+YKL + FP  YPY AP I F TPCFHPNVD HGNICLDILKEKWS+ +SVSTIL SLRSLL+
Sbjct:   55 YEGLSYKLHIDFPSNYPYTAPTIRFVTPCFHPNVDAHGNICLDILKEKWSATYSVSTILTSLRSLLS 121
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Ubiquitin-conjugating (enzyme E2C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJV3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.530e-29
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 201
            YE L Y+L + F D YPYKAP I F TPCFHPNVDEHGNICLDILKEKWS+A+SV +ILQSLRSLL+
Sbjct:   47 YEDLCYELSMSFNDEYPYKAPKIMFRTPCFHPNVDEHGNICLDILKEKWSAAYSVLSILQSLRSLLS 113
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Ubiquitin-conjugating (enzyme E2 C n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NTP1_ARAVE)

HSP 1 Score: 108 bits (271), Expect = 5.450e-29
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 201
            YEGLTYKLKL FP+ YPY  P + F TPCFHPNVD+HGNICLDILKEKW++ + V TIL SL+SLLA
Sbjct:   35 YEGLTYKLKLDFPNNYPYSPPHVRFTTPCFHPNVDDHGNICLDILKEKWTALYDVRTILLSLQSLLA 101
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TQW3_9VIRI)

HSP 1 Score: 109 bits (273), Expect = 8.080e-29
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLL 198
            YEGL +KLKL FP  YPYKAP++TF+TPCFHPNVD+ GNICLDILKE+WSSA+ V T+L S++SLL
Sbjct:   75 YEGLKFKLKLKFPTDYPYKAPVVTFDTPCFHPNVDQFGNICLDILKEQWSSAYDVRTVLLSIQSLL 140
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BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Predicted (protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MIV7_MICPC)

HSP 1 Score: 109 bits (272), Expect = 9.770e-29
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLL 198
            YEGLTYKL L FP+ YP+KAP + FETPCFHPNVD+ GNICLDILKEKWS+ ++V TIL S++SLL
Sbjct:   74 YEGLTYKLSLAFPNDYPFKAPTVKFETPCFHPNVDQFGNICLDILKEKWSAVYNVRTILLSIQSLL 139
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CG93_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.330e-28
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLA 201
            Y+GL+Y+L + FP  YPY AP I F TPCFHPN+DEHGNICLDILKEKWS+A+SV+T+L SL+SLL+
Sbjct:   68 YDGLSYRLTINFPSDYPYTAPTIRFATPCFHPNIDEHGNICLDILKEKWSAAYSVTTVLISLQSLLS 134
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Match: UBC (core domain-containing protein n=3 Tax=Branchiostoma TaxID=7737 RepID=C3YEG7_BRAFL)

HSP 1 Score: 108 bits (270), Expect = 2.300e-28
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLL 198
            YEGL YKL L FP  YPYK P + FETPCFHPNVDEHGNICLDILKEKWS+ + V T+L S++SLL
Sbjct:   75 YEGLQYKLSLEFPQGYPYKPPTVRFETPCFHPNVDEHGNICLDILKEKWSALYDVRTVLLSIQSLL 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7733.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UBC1.350e-41100.00core domain-containing protein n=2 Tax=Ectocarpus ... [more]
Ubiquitin-conjugating6.180e-3074.63enzyme n=1 Tax=Helicosporidium sp. ATCC 50920 TaxI... [more]
Hypothetical6.260e-3075.76protein n=1 Tax=Prasinoderma singulare TaxID=67678... [more]
Ubiquitin-conjugating1.480e-2976.12enzyme E2 C n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
Ubiquitin-conjugating2.530e-2976.12enzyme E2C n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
Ubiquitin-conjugating5.450e-2973.13enzyme E2 C n=2 Tax=Araneus ventricosus TaxID=1828... [more]
Hypothetical8.080e-2972.73protein n=1 Tax=Prasinoderma coloniale TaxID=15613... [more]
Predicted9.770e-2972.73protein n=2 Tax=Micromonas pusilla TaxID=38833 Rep... [more]
Hypothetical1.330e-2870.15protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
UBC2.300e-2872.73core domain-containing protein n=3 Tax=Branchiosto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7733contigH-canaliculatus_M_contigs7733:645..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G9D3
Preferred nameUBE2C
PFAMsUQ_con
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K06674,ko:K06688,ko:K08707
KEGG Pathwayko04111,ko04120,map04111,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007096,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010458,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010948,GO:0010965,GO:0010992,GO:0010994,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030071,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031536,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0042176,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902494,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903504,GO:1904666,GO:1904668,GO:1905818,GO:1905820,GO:1990234,GO:2001252
Exons1
Evalue2.22e-42
EggNOG OGsCOG5078@1|root,KOG0421@2759|Eukaryota
EC2.3.2.23
Descriptionanaphase-promoting complex-dependent catabolic process
Cds size201
COG categoryO
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854110.9651153-CDS-H-canaliculatus_M_contigs7733:644..8451696854110.9651153-CDS-H-canaliculatus_M_contigs7733:644..845Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7733 645..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7733.1.1prot_H-canaliculatus_M_contigs7733.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7733 645..845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7733.1.1

>prot_H-canaliculatus_M_contigs7733.1.1 ID=prot_H-canaliculatus_M_contigs7733.1.1|Name=mRNA_H-canaliculatus_M_contigs7733.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
YEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWS
SAFSVSTILQSLRSLLA
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mRNA from alignment at H-canaliculatus_M_contigs7733:645..845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7733.1.1 ID=mRNA_H-canaliculatus_M_contigs7733.1.1|Name=mRNA_H-canaliculatus_M_contigs7733.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7733:645..845- (Hapterophycus canaliculatus Oshoro7m male)
TATGAAGGGTTGACCTACAAGCTGAAGCTGGTGTTCCCGGACACGTACCC
GTACAAGGCCCCGCTGATCACCTTCGAGACGCCCTGCTTCCATCCCAACG
TTGACGAGCACGGAAACATCTGCCTGGACATCTTGAAGGAGAAGTGGTCC
TCGGCATTCAGCGTCAGCACCATTCTGCAGTCCCTCCGCTCTCTGCTGGC
C
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7733:645..845-

>mRNA_H-canaliculatus_M_contigs7733.1.1 ID=mRNA_H-canaliculatus_M_contigs7733.1.1|Name=mRNA_H-canaliculatus_M_contigs7733.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7733:645..845- (Hapterophycus canaliculatus Oshoro7m male)
TATGAAGGGTTGACCTACAAGCTGAAGCTGGTGTTCCCGGACACGTACCC
GTACAAGGCCCCGCTGATCACCTTCGAGACGCCCTGCTTCCATCCCAACG
TTGACGAGCACGGAAACATCTGCCTGGACATCTTGAAGGAGAAGTGGTCC
TCGGCATTCAGCGTCAGCACCATTCTGCAGTCCCTCCGCTCTCTGCTGGC
C
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