mRNA_H-canaliculatus_M_contigs7732.2.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7732.2.2
Unique NamemRNA_H-canaliculatus_M_contigs7732.2.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL97_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.020e-22
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 QKYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHCG 144
            QK+LIFDFPGQ VELFTHCFCVQN+VQRLQKDDVRLAAVHLVDAYHCG
Sbjct:  100 QKHLIFDFPGQ-VELFTHCFCVQNLVQRLQKDDVRLAAVHLVDAYHCG 146
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.920e-20
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 QKYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHCG 144
            QK+LIFDFPGQ VELFTHCFCVQN+VQRLQKDDVRLAAVHLVDAYHCG
Sbjct:  100 QKHLIFDFPGQ-VELFTHCFCVQNLVQRLQKDDVRLAAVHLVDAYHCG 146
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GLA9_MYTGA)

HSP 1 Score: 65.5 bits (158), Expect = 7.670e-10
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    4 KYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHC 141
            KYL+FDFPGQ VEL+TH   V+NV+Q+LQK D RL AVHLVD+++C
Sbjct:  100 KYLLFDFPGQ-VELYTHHNAVRNVLQKLQKWDCRLVAVHLVDSHYC 144
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GLJ9_MYTGA)

HSP 1 Score: 65.5 bits (158), Expect = 1.310e-9
Identity = 31/46 (67.39%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    4 KYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHC 141
            KYL+FDFPGQ VEL+TH   V+NV+Q+LQK D RL AVHLVD+++C
Sbjct:  100 KYLLFDFPGQ-VELYTHHNAVRNVLQKLQKWDCRLVAVHLVDSHYC 144
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZI90_TRICV)

HSP 1 Score: 62.4 bits (150), Expect = 9.800e-9
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:    4 KYLIFDFPGQQVELFTHCFCVQNVVQRLQKD-DVRLAAVHLVDAYHCGRVRCQTTTAVMPAPNNDSMILAFVRILCNI 234
             YL+ D PGQ VEL+THC CVQN++ RL K+ D+RL AV L+DA++C         A++       + L  V +L  +
Sbjct:   55 SYLLIDLPGQ-VELYTHCSCVQNIMARLSKELDLRLCAVQLIDAHYCADAAKFIAAALLSTTTMIRLELPCVNVLSKV 131
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YXZ9_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.640e-8
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    7 YLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHCGRVRCQTTTAVMPAPNNDSMILAFVRILCNILCQKTQTAVQVSSDNVLNVFN 297
            Y IFDFPGQ VEL+TH   V+++V RLQK D RL AVHLVDA++C       +  ++       + L  + +L  +   +T   +  S D    V N
Sbjct:   99 YFIFDFPGQ-VELYTHNSAVKSIVDRLQKLDFRLVAVHLVDAHYCTDPTKYISVLLLSLKTMVMLELPHINVLSKMDLIETYGKLAFSLDYYTEVMN 194
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WEH8_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 4.390e-8
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 KYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHC 141
             Y++FDFPGQ VELFTH   V++++ +LQK + RL AVHLVDA+HC
Sbjct:   98 SYVLFDFPGQ-VELFTHHTAVRSILDKLQKLNYRLCAVHLVDAHHC 142
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WID8_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-7
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 YLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHC 141
            Y++FD+PGQ VELFTH   V+ ++++LQK D RL AVHLVDA++C
Sbjct:   99 YILFDYPGQ-VELFTHHTAVKQILEKLQKLDYRLVAVHLVDAHYC 142
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BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WU07_EPTBU)

HSP 1 Score: 60.1 bits (144), Expect = 1.270e-7
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    4 KYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHCGRVRCQTTTAVMPAPNNDSMILAFVRILCNILCQKTQTAVQVSSDNVLN 288
             YL+FD PGQ VEL+TH   +++V + L KD+VRLAAVHLVD+++C              P        FV +LC  LC  T   V++   N+L+
Sbjct:   92 NYLLFDCPGQ-VELYTHHGALKSVFESLTKDNVRLAAVHLVDSHYCSD------------PGK------FVSVLCTTLC--TMLHVELPHINILS 165
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Match: GPN-loop (GTPase 2 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4Q6C7_EPTBU)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-7
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    4 KYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHCGRVRCQTTTAVMPAPNNDSMILAFVRILCNILCQKTQTAVQVSSDNVLN 288
             YL+FD PGQ VEL+TH   +++V + L KD+VRLAAVHLVD+++C              P        FV +LC  LC  T   V++   N+L+
Sbjct:  105 NYLLFDCPGQ-VELYTHHGALKSVFESLTKDNVRLAAVHLVDSHYCSD------------PGK------FVSVLCTTLC--TMLHVELPHINILS 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7732.2.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
GPN-loop4.020e-2293.75GTPase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Uncharacterized1.920e-2093.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
GPN-loop7.670e-1067.39GTPase 2 n=1 Tax=Mytilus galloprovincialis TaxID=2... [more]
GPN-loop1.310e-967.39GTPase 2 n=1 Tax=Mytilus galloprovincialis TaxID=2... [more]
GPN-loop9.800e-941.03GTPase 2 (Fragment) n=1 Tax=Trieres chinensis TaxI... [more]
GPN-loop1.640e-838.14GTPase 2 n=2 Tax=Basidiobolus meristosporus CBS 93... [more]
GPN-loop4.390e-860.87GTPase 2 n=1 Tax=Blyttiomyces helicus TaxID=388810... [more]
GPN-loop1.050e-760.00GTPase 2 n=1 Tax=Lichtheimia ramosa TaxID=688394 R... [more]
GPN-loop1.270e-740.00GTPase 2 n=1 Tax=Eptatretus burgeri TaxID=7764 Rep... [more]
GPN-loop1.290e-740.00GTPase 2 n=1 Tax=Eptatretus burgeri TaxID=7764 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7732contigH-canaliculatus_M_contigs7732:4292..5208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LL97
Preferred nameGPN2
PFAMsATP_bind_1
Model size485
Max annot lvl2759|Eukaryota
KEGG koko:K06883
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005874,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0008104,GO:0008150,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009987,GO:0010154,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017038,GO:0017111,GO:0022402,GO:0022414,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034085,GO:0034087,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048285,GO:0048316,GO:0048507,GO:0048608,GO:0048731,GO:0048856,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051641,GO:0051649,GO:0061458,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902182,GO:1903047
Exons2
Evalue1.41e-23
EggNOG OGsCOG1100@1|root,KOG1533@2759|Eukaryota
DescriptionGTPase activity
Cds size348
COG categoryF
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854110.8035195-UTR-H-canaliculatus_M_contigs7732:4291..44281696854110.8035195-UTR-H-canaliculatus_M_contigs7732:4291..4428Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7732 4292..4428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854110.8158815-CDS-H-canaliculatus_M_contigs7732:4428..47431696854110.8158815-CDS-H-canaliculatus_M_contigs7732:4428..4743Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7732 4429..4743 -
1696854110.8284554-CDS-H-canaliculatus_M_contigs7732:5175..52081696854110.8284554-CDS-H-canaliculatus_M_contigs7732:5175..5208Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7732 5176..5208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7732.2.2prot_H-canaliculatus_M_contigs7732.2.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7732 4429..5208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7732.2.2

>prot_H-canaliculatus_M_contigs7732.2.2 ID=prot_H-canaliculatus_M_contigs7732.2.2|Name=mRNA_H-canaliculatus_M_contigs7732.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp
QKYLIFDFPGQQVELFTHCFCVQNVVQRLQKDDVRLAAVHLVDAYHCGRV
RCQTTTAVMPAPNNDSMILAFVRILCNILCQKTQTAVQVSSDNVLNVFNA
RGSFQRRRLCLVMRT*
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mRNA from alignment at H-canaliculatus_M_contigs7732:4292..5208-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7732.2.2 ID=mRNA_H-canaliculatus_M_contigs7732.2.2|Name=mRNA_H-canaliculatus_M_contigs7732.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=917bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7732:4292..5208- (Hapterophycus canaliculatus Oshoro7m male)
CAAAAGTACCTGATCTTCGATTTCCCAGGACAGGTGTGTGTGTGGGTACC
CGCTTCCCCCATTTCTTCCGGAAACATGATCTCCAACCGTAACGGTACAA
CGTACTGGGGGTACAACGTGTAAGTGTCTACCGTGGCAACACTGGAGTAG
GTAGAAGGAGACTTGGCGTCCATTGGCCCACTGCAAGGACTTCTCGTCGA
ACGGTACACCCTGTCCATCTTGGTGGGTGAGGCTCGTCTCATAGCATGCT
GCATCAACGAACACTCTCGCCTTCCTAGATTTGTATCAACCTCGCCACCA
AATGTTTTCACAACGGCTTCTTCTCTCAGAGATGAGGCTGATTCATTCTT
GCTTGCGGAGTCCTGCTGCTGCGTTGCCTCTCTCTTGGATGACGAAATCC
TCCTGCTTGCCGTGCTCCACGCCGGCACTTCATCGGACGATTTTCCCTCG
CTCGCAACGATCGAGCAGGTGGAGCTTTTCACGCACTGCTTCTGTGTGCA
AAACGTGGTCCAGAGGCTACAGAAGGACGACGTGAGGTTGGCGGCGGTTC
ACCTGGTCGACGCTTACCATTGCGGGCGAGTGAGATGCCAAACAACCACA
GCAGTAATGCCTGCGCCAAACAACGATTCGATGATATTGGCTTTTGTGAG
AATCCTCTGTAACATTCTTTGCCAAAAAACCCAAACCGCTGTTCAGGTGT
CTTCTGATAACGTCTTAAACGTTTTCAACGCACGGGGTAGCTTTCAGCGG
CGGCGTCTTTGCCTGGTGATGCGCACCTAATCTTGCCTAACCCCATTCCA
CCCTCACCCCTCCTTCCTCGACCTAGGAATCCGTCTCTCTTCATTTCTGC
GGCGTTGCTGTCACTGATGGTCATGCTGAGGCTCGAGCTGCCTCACGTCA
ACGTGCTCTCGAAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7732:4292..5208-

>mRNA_H-canaliculatus_M_contigs7732.2.2 ID=mRNA_H-canaliculatus_M_contigs7732.2.2|Name=mRNA_H-canaliculatus_M_contigs7732.2.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7732:4292..5208- (Hapterophycus canaliculatus Oshoro7m male)
CAAAAGTACCTGATCTTCGATTTCCCAGGACAGCAGGTGGAGCTTTTCAC
GCACTGCTTCTGTGTGCAAAACGTGGTCCAGAGGCTACAGAAGGACGACG
TGAGGTTGGCGGCGGTTCACCTGGTCGACGCTTACCATTGCGGGCGAGTG
AGATGCCAAACAACCACAGCAGTAATGCCTGCGCCAAACAACGATTCGAT
GATATTGGCTTTTGTGAGAATCCTCTGTAACATTCTTTGCCAAAAAACCC
AAACCGCTGTTCAGGTGTCTTCTGATAACGTCTTAAACGTTTTCAACGCA
CGGGGTAGCTTTCAGCGGCGGCGTCTTTGCCTGGTGATGCGCACCTAA
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