mRNA_H-canaliculatus_M_contigs772.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 105 bits (262), Expect = 5.040e-24 Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
G TPLH ++ A +ALL+ GA+V KNA +PLH A + G G A M DLLLR GADET V +G T ++V + E+ D +++D VRKLLA APADRAWRRRG L+L
Sbjct: 589 GSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKT--EESDSLAEDVDRVRKLLARAPADRAWRRRGFLIL 704
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 102 bits (254), Expect = 3.870e-23 Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 7 TPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
TP + C++AALAL K GAN+++++ G +PL AARQ G+ G + D+LLR GADET ++ DG+T EVVG + +++ VR LL NAPADRAWRRRG LVL
Sbjct: 223 TPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVL 338
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 101 bits (251), Expect = 8.420e-23 Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 7 TPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
TP + + C++AALAL K G+N+++++ G +PL AARQ G+ G + D+LLR GADET ++ DG+T EVVG + +++ VR LL NAP DRAWRRRG LVL
Sbjct: 174 TPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVL 289
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 2.450e-20 Identity = 58/121 (47.93%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 1 GGTPLHASAVMRCYDAALAL---LKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
G T LH +A+ R A L LK GA+V+++ G S L A + GK G + DLLLRWGADET V +G + +G + +ED R +E + VRKLLANAPADRAWRRR LVL
Sbjct: 226 GHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEED--RIPEEFEGVRKLLANAPADRAWRRRCSLVL 344
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 4.070e-20 Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAF-GYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQR--RADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLV 351
G TPL +A +A LALL+ GANV+SKN G SPL A R+G D A DLLLRWGADET VD D KT V ++ R RA ++ ++ V +LLA AP DRAWRRRG LV
Sbjct: 125 GRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACREGHHDAA----DLLLRWGADETAVDSDEKTIVSMMTHRIFRA---AVASRQRLERVSELLARAPQDRAWRRRGFLV 237
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 1.880e-18 Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 16 HASAVMRCYDAALALLKCGANVDSK-NAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
+A+A D AL LL+ GA+V+++ FG S LH A +D + DLLLRWGADETVVD G+TP+ + + R + + D+VRKLL NAPADR WRRRG LV+
Sbjct: 309 YAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNACTN--RDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTR---HSAETKDKVRKLLVNAPADRTWRRRGWLVM 417
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K) HSP 1 Score: 88.6 bits (218), Expect = 3.980e-18 Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 43 DAALALLKCGANVDSKNA-FGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
D AL LL+ GA+V++ FG S LH A + +D M DLLLRWGADETVVD G+TP++V + R + + VRKLL NAPADR WRRRG LV+
Sbjct: 376 DMALLLLRYGADVNASGGLFGSSALHNAIKN--RDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTSGTRFQ---RTAETKERVRKLLVNAPADRTWRRRGWLVM 475
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 5.330e-18 Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
G T LH +A D LALL+ GAN ++ + G+ PLH + K + + DLLLRWGA+ET D DG TP + + + +DE R Q +LLANAPA RAWRRRG +++
Sbjct: 326 GSTSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLVCKYP-KARSVAVADLLLRWGAEETATDNDGNTPADFI--QSSDESDGRLQ-------RLLANAPAGRAWRRRGMVIM 433
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.430e-17 Identity = 55/118 (46.61%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
G TP HA+A ++A LALLK GA++++ ++PLH A G +GA + DLLLRW ADE D G+TP +V R A E DR + V K L AP DRAWR RG LVL
Sbjct: 418 GETPRHAAAGKLNFEATLALLKHGADMNALGQTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLV-VRMAPET-DRMFVNVQRVWKPLQYAPQDRAWRHRGMLVL 533
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: EsV-1-8 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 5.180e-16 Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 55 ALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRA--QDEIDEVRKLLANAPADRAWRRRGCLVL 354
AL + GA V + GY+PLH + +G D+LLRWGADET ++ G +P + +G R G QDEID R LL+ APADRAWRRRG LV+
Sbjct: 3 ALFQHGAQVGVRGNQGYTPLHETCWER-HEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVM 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs772.1.1 >prot_H-canaliculatus_M_contigs772.1.1 ID=prot_H-canaliculatus_M_contigs772.1.1|Name=mRNA_H-canaliculatus_M_contigs772.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=108bp MRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWback to top mRNA from alignment at H-canaliculatus_M_contigs772:4660..5013- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs772.1.1 ID=mRNA_H-canaliculatus_M_contigs772.1.1|Name=mRNA_H-canaliculatus_M_contigs772.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=354bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs772:4660..5013- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs772:4660..5013- >mRNA_H-canaliculatus_M_contigs772.1.1 ID=mRNA_H-canaliculatus_M_contigs772.1.1|Name=mRNA_H-canaliculatus_M_contigs772.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs772:4660..5013- (Hapterophycus canaliculatus Oshoro7m male)back to top |