mRNA_H-canaliculatus_M_contigs7719.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7719.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7719.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7719.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7719contigH-canaliculatus_M_contigs7719:1015..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog126957.SMAR006209-PA
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size303
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00021
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria
DescriptionEncoded by
Cds size303
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.408881-CDS-H-canaliculatus_M_contigs7719:1014..13171696854109.408881-CDS-H-canaliculatus_M_contigs7719:1014..1317Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7719 1015..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7719.1.1prot_H-canaliculatus_M_contigs7719.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7719 1015..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7719.1.1

>prot_H-canaliculatus_M_contigs7719.1.1 ID=prot_H-canaliculatus_M_contigs7719.1.1|Name=mRNA_H-canaliculatus_M_contigs7719.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=101bp
HHKTTIRSSKALGTSHMDVAGPYESPVGRSRHLVTLSDSCPRWRRVYGVR
TKAGILACLNKFIADMGKMECLRVDSARENTSPRFVVFRDDNNVRRELAC
*
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mRNA from alignment at H-canaliculatus_M_contigs7719:1015..1317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7719.1.1 ID=mRNA_H-canaliculatus_M_contigs7719.1.1|Name=mRNA_H-canaliculatus_M_contigs7719.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=303bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7719:1015..1317- (Hapterophycus canaliculatus Oshoro7m male)
CACCACAAAACCACCATAAGGTCTTCCAAGGCGCTGGGGACGTCGCACAT
GGACGTGGCCGGGCCCTACGAGTCGCCTGTCGGCCGCTCGCGGCACCTCG
TGACCCTCTCGGACAGCTGCCCCCGGTGGCGTCGCGTGTACGGGGTGCGT
ACGAAGGCGGGCATCTTGGCGTGCCTGAACAAGTTCATCGCGGATATGGG
CAAGATGGAGTGCCTCCGCGTGGACAGCGCGAGAGAGAACACGAGCCCGC
GCTTTGTCGTCTTCCGCGACGACAACAACGTCCGTCGGGAGCTGGCGTGC
TAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7719:1015..1317-

>mRNA_H-canaliculatus_M_contigs7719.1.1 ID=mRNA_H-canaliculatus_M_contigs7719.1.1|Name=mRNA_H-canaliculatus_M_contigs7719.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=303bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7719:1015..1317- (Hapterophycus canaliculatus Oshoro7m male)
CACCACAAAACCACCATAAGGTCTTCCAAGGCGCTGGGGACGTCGCACAT
GGACGTGGCCGGGCCCTACGAGTCGCCTGTCGGCCGCTCGCGGCACCTCG
TGACCCTCTCGGACAGCTGCCCCCGGTGGCGTCGCGTGTACGGGGTGCGT
ACGAAGGCGGGCATCTTGGCGTGCCTGAACAAGTTCATCGCGGATATGGG
CAAGATGGAGTGCCTCCGCGTGGACAGCGCGAGAGAGAACACGAGCCCGC
GCTTTGTCGTCTTCCGCGACGACAACAACGTCCGTCGGGAGCTGGCGTGC
TAG
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