mRNA_H-canaliculatus_M_contigs77184.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77184.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77184.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.020e-39
Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            QGDGLPIG+M C DAAGEAEAVAHHLELYWTSGRV  SEMAVMYRTNAQSRSFEEACLRKALPF+VVGAQRFYERREV 
Sbjct:  493 QGDGLPIGVMVCSDAAGEAEAVAHHLELYWTSGRVQPSEMAVMYRTNAQSRSFEEACLRKALPFVVVGAQRFYERREVK 571          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.260e-21
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   10 GLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREV 234
            GLP+G+M C++AA EA  +A  +  YWT G VP SEMAVMYRTNAQSR+ EEA LR+ +P+ VV  Q+F+ RREV
Sbjct:  499 GLPLGVMTCYNAAQEAAEIAKQVSRYWTRGTVPLSEMAVMYRTNAQSRALEEAFLRQGVPYRVVDGQKFFARREV 573          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) TaxID=309801 RepID=B9KXW3_THERP)

HSP 1 Score: 76.6 bits (187), Expect = 1.830e-14
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   10 GLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            G PI ++ACWD   EAE V   ++    +G     ++AV+YR NAQSRS EEA +R+ +P+ V+G  RFYER+E+ 
Sbjct:  356 GPPIRLLACWDEQQEAEMVVSEIDRLVRTGNARYRDIAVLYRINAQSRSVEEALVRRQIPYQVIGGVRFYERKEIK 431          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=4 Tax=Cyanobacteria TaxID=1117 RepID=K9P976_CYAGP)

HSP 1 Score: 75.9 bits (185), Expect = 3.410e-14
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G+G PI +  C D   EAEAV H        H EL W        +MAV+YRTNAQSR+ EE+ +R  LP++VVG  RFY+RRE+ 
Sbjct:  364 RGEGEPISLTRCDDEIAEAEAVVHRMRMLEAAHPELRW-------GDMAVLYRTNAQSRAMEESLVRWGLPYIVVGGLRFYDRREIK 443          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZB6_9CHLR)

HSP 1 Score: 75.5 bits (184), Expect = 4.640e-14
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G GLPI +   +D   E+E V   ++     G     + AVMYRTNAQSR+ EEA LR+ +P+ +VGA RFYERRE+ 
Sbjct:  308 KGQGLPIIVFEAYDEVEESEFVVGEIQRLIARGLYSPGDFAVMYRTNAQSRTLEEAFLRRGMPYQLVGATRFYERREIK 386          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A523HMJ9_9CHLR)

HSP 1 Score: 75.5 bits (184), Expect = 4.640e-14
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G G PI +   +D   EA+ V   + ++  SG     + A+MYRTNAQSR+ EEA LR  LP+ +VGAQRFY R+EV 
Sbjct:  310 RGSGAPILVHEAYDQDEEAQFVVEKISMFTLSGEAEPGDCAIMYRTNAQSRAIEEAFLRAGLPYRLVGAQRFYGRKEVK 388          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: UvrD-helicase (domain-containing protein n=1 Tax=Synechococcus sp. CCY 9618 TaxID=2815602 RepID=UPI001C21FA9D)

HSP 1 Score: 75.5 bits (184), Expect = 4.660e-14
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G+G PI +  C D   EAEAV H        H EL W        +MAV+YRTNAQSR+ EE+ +R  LP+LVVG  RFY+RRE+ 
Sbjct:  364 RGEGEPIMLTRCDDEIAEAEAVVHRMRMLEAAHPELRW-------GDMAVLYRTNAQSRALEESLVRWGLPYLVVGGLRFYDRREIK 443          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=2 Tax=Synechococcales TaxID=1890424 RepID=A0A326QG31_9CYAN)

HSP 1 Score: 75.1 bits (183), Expect = 6.370e-14
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G+G PI +  C D   EAEAV H        H EL W        +MAV+YRTNAQSR+ EE+ +R  LP++VVG  RFY+RRE+ 
Sbjct:  364 RGEGEPIVVTRCDDEIAEAEAVVHRLRMLEAAHPELRW-------GDMAVLYRTNAQSRAMEESLVRWGLPYIVVGGLRFYDRREIK 443          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Synechococcus sp. CBW1107 TaxID=2789857 RepID=A0A7T1MBG2_9SYNE)

HSP 1 Score: 75.1 bits (183), Expect = 6.380e-14
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G+G PI +  C D   EAEAV H        H +L W        +MAV+YRTNAQSR+ EEA +R  +P+LVVG  RFY+RRE+ 
Sbjct:  390 RGEGEPIRLTRCDDEIAEAEAVVHRMRTLEAAHPDLRW-------GDMAVLYRTNAQSRALEEALVRWGIPYLVVGGLRFYDRREIK 469          
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase (Fragment) n=2 Tax=Prochlorococcus sp. TaxID=1220 RepID=Q9L4M3_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSG-RVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
            +G+G PI +  C D   EAEAV H L +   S   +   +MA++YRTNAQSR+ E++ +R ++P++VVG  RFY+RRE+ 
Sbjct:  370 RGEGEPIKLTRCDDEIAEAEAVIHRLRILDASNPELNWGDMAILYRTNAQSRAIEDSLVRWSIPYIVVGGLRFYDRREIK 449          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA1.020e-3991.14helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP... [more]
DNA1.260e-2160.00helicase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
DNA1.830e-1446.05helicase n=1 Tax=Thermomicrobium roseum (strain AT... [more]
DNA3.410e-1447.13helicase n=4 Tax=Cyanobacteria TaxID=1117 RepID=K9... [more]
DNA4.640e-1446.84helicase n=1 Tax=Chloroflexi bacterium TaxID=20267... [more]
DNA4.640e-1446.84helicase n=1 Tax=Chloroflexi bacterium TaxID=20267... [more]
UvrD-helicase4.660e-1448.28domain-containing protein n=1 Tax=Synechococcus sp... [more]
DNA6.370e-1447.13helicase n=2 Tax=Synechococcales TaxID=1890424 Rep... [more]
DNA6.380e-1447.13helicase n=1 Tax=Synechococcus sp. CBW1107 TaxID=2... [more]
DNA1.600e-1345.00helicase (Fragment) n=2 Tax=Prochlorococcus sp. Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77184contigH-canaliculatus_M_contigs77184:176..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLP3
PFAMsUvrD-helicase,UvrD_C
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K03657
KEGG Pathwayko03420,ko03430,map03420,map03430
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.69e-34
EggNOG OGsCOG0210@1|root,KOG2108@2759|Eukaryota
EC3.6.4.12
DescriptionATP-dependent DNA helicase activity
Cds size225
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.2709696-UTR-H-canaliculatus_M_contigs77184:175..2021696854109.2709696-UTR-H-canaliculatus_M_contigs77184:175..202Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77184 176..202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.2875547-CDS-H-canaliculatus_M_contigs77184:202..4271696854109.2875547-CDS-H-canaliculatus_M_contigs77184:202..427Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77184 203..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77184.1.1prot_H-canaliculatus_M_contigs77184.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77184 203..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77184.1.1

>prot_H-canaliculatus_M_contigs77184.1.1 ID=prot_H-canaliculatus_M_contigs77184.1.1|Name=mRNA_H-canaliculatus_M_contigs77184.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp
MACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLR
KALPFLVVGAQRFYERREVSKGKR*
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mRNA from alignment at H-canaliculatus_M_contigs77184:176..427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77184.1.1 ID=mRNA_H-canaliculatus_M_contigs77184.1.1|Name=mRNA_H-canaliculatus_M_contigs77184.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=252bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77184:176..427+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGGAGACGGGTTGCCGATCGGTATCATGGCCTGCTGGGACGCGGCCGG AGAGGCGGAGGCGGTGGCGCACCACCTGGAACTGTACTGGACCAGTGGCC GGGTACCTGCTTCGGAAATGGCCGTAATGTACCGCACCAACGCCCAGAGC CGCTCGTTCGAGGAGGCGTGCTTGAGGAAGGCTCTACCGTTCCTGGTGGT CGGAGCGCAGAGATTCTACGAGCGCCGGGAGGTGAGCAAGGGAAAGAGAT AG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77184:176..427+

>mRNA_H-canaliculatus_M_contigs77184.1.1 ID=mRNA_H-canaliculatus_M_contigs77184.1.1|Name=mRNA_H-canaliculatus_M_contigs77184.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77184:176..427+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCTGCTGGGACGCGGCCGGAGAGGCGGAGGCGGTGGCGCACCACCT
GGAACTGTACTGGACCAGTGGCCGGGTACCTGCTTCGGAAATGGCCGTAA
TGTACCGCACCAACGCCCAGAGCCGCTCGTTCGAGGAGGCGTGCTTGAGG
AAGGCTCTACCGTTCCTGGTGGTCGGAGCGCAGAGATTCTACGAGCGCCG
GGAGGTGAGCAAGGGAAAGAGATAG
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