mRNA_H-canaliculatus_M_contigs77184.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLP3_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.020e-39 Identity = 72/79 (91.14%), Postives = 74/79 (93.67%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
QGDGLPIG+M C DAAGEAEAVAHHLELYWTSGRV SEMAVMYRTNAQSRSFEEACLRKALPF+VVGAQRFYERREV
Sbjct: 493 QGDGLPIGVMVCSDAAGEAEAVAHHLELYWTSGRVQPSEMAVMYRTNAQSRSFEEACLRKALPFVVVGAQRFYERREVK 571
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L0_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.260e-21 Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 10 GLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREV 234
GLP+G+M C++AA EA +A + YWT G VP SEMAVMYRTNAQSR+ EEA LR+ +P+ VV Q+F+ RREV
Sbjct: 499 GLPLGVMTCYNAAQEAAEIAKQVSRYWTRGTVPLSEMAVMYRTNAQSRALEEAFLRQGVPYRVVDGQKFFARREV 573
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) TaxID=309801 RepID=B9KXW3_THERP) HSP 1 Score: 76.6 bits (187), Expect = 1.830e-14 Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 10 GLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
G PI ++ACWD EAE V ++ +G ++AV+YR NAQSRS EEA +R+ +P+ V+G RFYER+E+
Sbjct: 356 GPPIRLLACWDEQQEAEMVVSEIDRLVRTGNARYRDIAVLYRINAQSRSVEEALVRRQIPYQVIGGVRFYERKEIK 431
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=4 Tax=Cyanobacteria TaxID=1117 RepID=K9P976_CYAGP) HSP 1 Score: 75.9 bits (185), Expect = 3.410e-14 Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G+G PI + C D EAEAV H H EL W +MAV+YRTNAQSR+ EE+ +R LP++VVG RFY+RRE+
Sbjct: 364 RGEGEPISLTRCDDEIAEAEAVVHRMRMLEAAHPELRW-------GDMAVLYRTNAQSRAMEESLVRWGLPYIVVGGLRFYDRREIK 443
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZB6_9CHLR) HSP 1 Score: 75.5 bits (184), Expect = 4.640e-14 Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G GLPI + +D E+E V ++ G + AVMYRTNAQSR+ EEA LR+ +P+ +VGA RFYERRE+
Sbjct: 308 KGQGLPIIVFEAYDEVEESEFVVGEIQRLIARGLYSPGDFAVMYRTNAQSRTLEEAFLRRGMPYQLVGATRFYERREIK 386
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A523HMJ9_9CHLR) HSP 1 Score: 75.5 bits (184), Expect = 4.640e-14 Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G G PI + +D EA+ V + ++ SG + A+MYRTNAQSR+ EEA LR LP+ +VGAQRFY R+EV
Sbjct: 310 RGSGAPILVHEAYDQDEEAQFVVEKISMFTLSGEAEPGDCAIMYRTNAQSRAIEEAFLRAGLPYRLVGAQRFYGRKEVK 388
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: UvrD-helicase (domain-containing protein n=1 Tax=Synechococcus sp. CCY 9618 TaxID=2815602 RepID=UPI001C21FA9D) HSP 1 Score: 75.5 bits (184), Expect = 4.660e-14 Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G+G PI + C D EAEAV H H EL W +MAV+YRTNAQSR+ EE+ +R LP+LVVG RFY+RRE+
Sbjct: 364 RGEGEPIMLTRCDDEIAEAEAVVHRMRMLEAAHPELRW-------GDMAVLYRTNAQSRALEESLVRWGLPYLVVGGLRFYDRREIK 443
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=2 Tax=Synechococcales TaxID=1890424 RepID=A0A326QG31_9CYAN) HSP 1 Score: 75.1 bits (183), Expect = 6.370e-14 Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G+G PI + C D EAEAV H H EL W +MAV+YRTNAQSR+ EE+ +R LP++VVG RFY+RRE+
Sbjct: 364 RGEGEPIVVTRCDDEIAEAEAVVHRLRMLEAAHPELRW-------GDMAVLYRTNAQSRAMEESLVRWGLPYIVVGGLRFYDRREIK 443
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase n=1 Tax=Synechococcus sp. CBW1107 TaxID=2789857 RepID=A0A7T1MBG2_9SYNE) HSP 1 Score: 75.1 bits (183), Expect = 6.380e-14 Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAH--------HLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G+G PI + C D EAEAV H H +L W +MAV+YRTNAQSR+ EEA +R +P+LVVG RFY+RRE+
Sbjct: 390 RGEGEPIRLTRCDDEIAEAEAVVHRMRTLEAAHPDLRW-------GDMAVLYRTNAQSRALEEALVRWGIPYLVVGGLRFYDRREIK 469
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Match: DNA (helicase (Fragment) n=2 Tax=Prochlorococcus sp. TaxID=1220 RepID=Q9L4M3_9CYAN) HSP 1 Score: 73.9 bits (180), Expect = 1.600e-13 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 1 QGDGLPIGIMACWDAAGEAEAVAHHLELYWTSG-RVPASEMAVMYRTNAQSRSFEEACLRKALPFLVVGAQRFYERREVS 237
+G+G PI + C D EAEAV H L + S + +MA++YRTNAQSR+ E++ +R ++P++VVG RFY+RRE+
Sbjct: 370 RGEGEPIKLTRCDDEIAEAEAVIHRLRILDASNPELNWGDMAILYRTNAQSRAIEDSLVRWSIPYIVVGGLRFYDRREIK 449 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77184.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs77184.1.1 >prot_H-canaliculatus_M_contigs77184.1.1 ID=prot_H-canaliculatus_M_contigs77184.1.1|Name=mRNA_H-canaliculatus_M_contigs77184.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp MACWDAAGEAEAVAHHLELYWTSGRVPASEMAVMYRTNAQSRSFEEACLRback to top mRNA from alignment at H-canaliculatus_M_contigs77184:176..427+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs77184.1.1 ID=mRNA_H-canaliculatus_M_contigs77184.1.1|Name=mRNA_H-canaliculatus_M_contigs77184.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=252bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77184:176..427+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77184:176..427+ >mRNA_H-canaliculatus_M_contigs77184.1.1 ID=mRNA_H-canaliculatus_M_contigs77184.1.1|Name=mRNA_H-canaliculatus_M_contigs77184.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77184:176..427+ (Hapterophycus canaliculatus Oshoro7m male)back to top |