mRNA_H-canaliculatus_M_contigs7718.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7718.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7718.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7718.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 4.320e-129
Identity = 220/348 (63.22%), Postives = 250/348 (71.84%), Query Frame = 1 
Query:    1 AVAADAMHVVNDDMILCIAAFASCRDLGVLGRACRRFSPLPFHEDIWELRALDILPSLPELRSAMDALKLTSCRQLVEAFTRIGIPGGVLGFWQAEASAVT--------PGELSPTLQELEARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTATDKIKIGFFSLEKDSSLTVGGEDDSWVPGDSMAEALARYTLAVPNSTERTPIRASGARAFLLEREDGQIRRYAKLTAHKPPCSS-GAAAGGRVEHLCGLWCAPYGSHGLEIIQLSTEPSSSPXXXXXXXXXXXXXXXXXXXXXEKAKACCSLPAWGVGEK----AGSSCAMTEDGSESVCTSAPATDGD 1005
            A A D   +++DD I  +A+FASC DL VL   CRRFSPLPF +D+WELRALDILPS+P++ SAM  LKLTS RQLVEAFT IGIPGGVLGFWQAEA  +          G    T+Q+ EARGELLRITLEAGGFLCESIAP+GTRRRIFTIRVSKT T +IKIGFF LEK+S+LT+GG++DSWVPGDSMAEALARYT A+P ST RTPIRASG +AF LER DG+  RY KLTA  PP SS G AA G V++LCGLWCAPYGSHGLEIIQLST+PS SP                      K  +     A G G +    +GSS +   DGSESVCTS PATD D
Sbjct:   51 AAADDKTRLLDDDTINVVASFASCHDLCVLAEVCRRFSPLPFCDDLWELRALDILPSVPQVHSAMSQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLAWDVQQQQQGGLDGTTVQQPEARGELLRITLEAGGFLCESIAPSGTRRRIFTIRVSKTPTGRIKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTA--PPASSPGGAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVV-------KLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDAD 389
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7718.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI)

HSP 1 Score: 320 bits (821), Expect = 4.240e-102
Identity = 194/294 (65.99%), Postives = 211/294 (71.77%), Query Frame = 1 
Query:  193 MDALKLTSCRQLVEAFTRIGIPGGVLGFWQAEASAVT--------PGELSPTLQELEARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTATDKIKIGFFSLEKDSSLTVGGEDDSWVPGDSMAEALARYTLAVPNSTERTPIRASGARAFLLEREDGQIRRYAKLTAHKPPCSSGA--AAGGRVEHLCGLWCAPYGSHGLEIIQLSTEPSSSPXXXXXXXXXXXXXXXXXXXXXEKAKACCSLPAWGVGEK------AGSSCAMTEDGSESVCTSAPATDGDDRSEAGS 1026
            M  LKLTS RQLVEAFT IGIPGGVLGFWQAEA  ++         G    T+QE EARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKT TD+I IGFF LEK+SSLT+GG+DDSWVPGDSMAEALARYT AVP ST+RTP+RASG +AF LER DG+  RY KLTA  PP SS    AA G V++LCGLWCAPYGSHGLEIIQLST+PS SP       XXXXXX          AK      +W  G        +G S +   DGSESVCTS PATD D  SEAGS
Sbjct:    1 MAQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAPTLSWDVQQQQQGGLDGATVQEREARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTA--PPASSPGVVAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATV-----AKLSSLSQSWAGGRGGPRGSVSGCSTSRMTDGSESVCTSTPATDAD-GSEAGS 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7718.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.320e-12963.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.240e-10265.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7718contigH-canaliculatus_M_contigs7718:3105..5036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1107
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-16_004220.1
Cds size1089
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.2066236-UTR-H-canaliculatus_M_contigs7718:3104..31221696854109.2066236-UTR-H-canaliculatus_M_contigs7718:3104..3122Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7718 3105..3122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.2186236-CDS-H-canaliculatus_M_contigs7718:3122..35261696854109.2186236-CDS-H-canaliculatus_M_contigs7718:3122..3526Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7718 3123..3526 +
1696854109.2314491-CDS-H-canaliculatus_M_contigs7718:4351..50361696854109.2314491-CDS-H-canaliculatus_M_contigs7718:4351..5036Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7718 4352..5036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7718.1.1prot_H-canaliculatus_M_contigs7718.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7718 3123..5036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7718.1.1

>prot_H-canaliculatus_M_contigs7718.1.1 ID=prot_H-canaliculatus_M_contigs7718.1.1|Name=mRNA_H-canaliculatus_M_contigs7718.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=363bp
MHVVNDDMILCIAAFASCRDLGVLGRACRRFSPLPFHEDIWELRALDILP
SLPELRSAMDALKLTSCRQLVEAFTRIGIPGGVLGFWQAEASAVTPGELS
PTLQELEARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTATDKIK
IGFFSLEKDSSLTVGGEDDSWVPGDSMAEALARYTLAVPNSTERTPIRAS
GARAFLLEREDGQIRRYAKLTAHKPPCSSGAAAGGRVEHLCGLWCAPYGS
HGLEIIQLSTEPSSSPSAGAAEAAAAAAAATAAAEAAEKAKACCSLPAWG
VGEKAGSSCAMTEDGSESVCTSAPATDGDDRSEAGSYLGDGGGWADGSPG
PDGASEEEDEDDG
back to top

mRNA from alignment at H-canaliculatus_M_contigs7718:3105..5036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7718.1.1 ID=mRNA_H-canaliculatus_M_contigs7718.1.1|Name=mRNA_H-canaliculatus_M_contigs7718.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1932bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7718:3105..5036+ (Hapterophycus canaliculatus Oshoro7m male)
GCTGTTGCAGCCGATGCGATGCACGTGGTGAACGACGACATGATTTTGTG
CATCGCCGCCTTCGCCAGCTGCCGGGACCTGGGCGTCTTGGGCCGCGCTT
GCCGGCGCTTCTCCCCTCTGCCTTTCCACGAAGACATCTGGGAGCTGAGG
GCGCTCGACATCCTGCCTTCGTTGCCCGAGCTGCGGTCGGCCATGGACGC
TCTCAAGCTTACCTCTTGCCGCCAGCTGGTTGAAGCTTTCACTAGGATTG
GCATTCCCGGAGGTGTTCTCGGATTCTGGCAAGCTGAGGCATCGGCGGTG
ACACCCGGCGAACTTTCCCCCACGTTGCAAGAACTCGAAGCTCGCGGAGA
GCTCCTGCGGATAACGCTGGAGGCGGGAGGTTTTCTGTGCGAGTCCATCG
CGCCGAATGGGACCCGTCGACGGTGCGTTTTTTTGCTTCGTTTCTGCGAT
TGCTGCTGCTATTCTGCTACCGCTTTTGCCTGTGGTACATATCAGTTGGA
GAGCGGGAGGGAGAAAAAGTAGTTGGAAGTTTTTTTGGGCAACCTTCGCC
TGCCCAGGGCGCTTTTAACCTCACTTCCTCGTGCTCACTCAGACCGAGCC
CTACGCTGGCACGCATCGGCACGGCTGTTGCCGCCGCGACTTGTTTTGTT
TTTCGAATCCCATCACAGCTCATCCTCTCACGCCGGCGTTCCTTTTGGCC
TCCGGATTCTCTCAAGAAAGGCCCCATCCCCAATACACGCATTACACGAT
CTCCTTACAAGTCTGTGTGGGCGAATCAAGCCACTTTGGAACTTATCTAT
GTTACCGACCTCTGTCTGTCTAGGTAGGCAGCCAAGGGTAAGCGTGTAGT
GTCCGTGAGCCCCGTATAAGGTCGGAGCTACCCGATCCCCCGACAGCGTC
CATCTAAAGCGAGAACACCCAGCCAAATTATTAGAACAGCAGTTCTTCGG
TAAAAGGGAGGGCTGACATCGAGACTCCTTCGGGGAGCTTCGATGTGAAG
GCGAGGATAAGGCACGCAAGGACGGGCTAGCCCGCAGCACAGAAAGGATC
GCACGTCCCTTTTCGCGGGATCCCCGTGAGGAAGGAAAGCGTCGCTAGAT
TAGTTCATGTGCCGTTGCTTCCGTATGCGTGTGTTGACACAAAGCTTTCA
TCCGTCAGATCGACACCACGTGTAAAGTTCGTTTCGCATCCCAACCAAGC
ATTCCCTCGCCCCCCTCCGACCGTTCTGAAATTGCCTCATTGAACAGCAT
CTTCACGATCCGAGTGTCTAAGACAGCGACCGATAAGATCAAGATCGGGT
TCTTCTCGTTGGAGAAGGACTCCTCGCTTACCGTCGGCGGTGAAGACGAT
AGCTGGGTGCCGGGCGATTCCATGGCGGAGGCTTTGGCGCGCTACACCCT
GGCCGTGCCCAACAGCACCGAGCGAACCCCGATCCGGGCCTCGGGCGCAA
GGGCCTTCCTCCTCGAGCGCGAGGACGGGCAAATCCGTCGGTACGCGAAA
CTCACGGCTCACAAGCCACCTTGTTCGTCTGGGGCCGCCGCGGGTGGAAG
AGTCGAGCACCTCTGCGGGCTTTGGTGCGCCCCGTACGGCAGCCATGGGT
TGGAGATAATCCAGCTGTCGACGGAACCCTCTTCCTCCCCGTCCGCTGGA
GCAGCAGAAGCGGCGGCGGCGGCAGCGGCGGCGACCGCAGCGGCAGAGGC
AGCCGAGAAGGCGAAGGCATGCTGTAGTCTCCCGGCGTGGGGCGTAGGGG
AAAAGGCAGGGAGCTCTTGCGCGATGACGGAGGATGGCAGCGAAAGTGTG
TGTACGTCCGCGCCCGCGACAGATGGGGACGACCGCAGCGAGGCCGGCTC
CTACTTGGGTGACGGTGGCGGCTGGGCGGACGGGAGCCCCGGGCCCGACG
GTGCCAGTGAGGAGGAGGATGAGGACGACGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7718:3105..5036+

>mRNA_H-canaliculatus_M_contigs7718.1.1 ID=mRNA_H-canaliculatus_M_contigs7718.1.1|Name=mRNA_H-canaliculatus_M_contigs7718.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1089bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7718:3105..5036+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCACGTGGTGAACGACGACATGATTTTGTGCATCGCCGCCTTCGCCAG
CTGCCGGGACCTGGGCGTCTTGGGCCGCGCTTGCCGGCGCTTCTCCCCTC
TGCCTTTCCACGAAGACATCTGGGAGCTGAGGGCGCTCGACATCCTGCCT
TCGTTGCCCGAGCTGCGGTCGGCCATGGACGCTCTCAAGCTTACCTCTTG
CCGCCAGCTGGTTGAAGCTTTCACTAGGATTGGCATTCCCGGAGGTGTTC
TCGGATTCTGGCAAGCTGAGGCATCGGCGGTGACACCCGGCGAACTTTCC
CCCACGTTGCAAGAACTCGAAGCTCGCGGAGAGCTCCTGCGGATAACGCT
GGAGGCGGGAGGTTTTCTGTGCGAGTCCATCGCGCCGAATGGGACCCGTC
GACGCATCTTCACGATCCGAGTGTCTAAGACAGCGACCGATAAGATCAAG
ATCGGGTTCTTCTCGTTGGAGAAGGACTCCTCGCTTACCGTCGGCGGTGA
AGACGATAGCTGGGTGCCGGGCGATTCCATGGCGGAGGCTTTGGCGCGCT
ACACCCTGGCCGTGCCCAACAGCACCGAGCGAACCCCGATCCGGGCCTCG
GGCGCAAGGGCCTTCCTCCTCGAGCGCGAGGACGGGCAAATCCGTCGGTA
CGCGAAACTCACGGCTCACAAGCCACCTTGTTCGTCTGGGGCCGCCGCGG
GTGGAAGAGTCGAGCACCTCTGCGGGCTTTGGTGCGCCCCGTACGGCAGC
CATGGGTTGGAGATAATCCAGCTGTCGACGGAACCCTCTTCCTCCCCGTC
CGCTGGAGCAGCAGAAGCGGCGGCGGCGGCAGCGGCGGCGACCGCAGCGG
CAGAGGCAGCCGAGAAGGCGAAGGCATGCTGTAGTCTCCCGGCGTGGGGC
GTAGGGGAAAAGGCAGGGAGCTCTTGCGCGATGACGGAGGATGGCAGCGA
AAGTGTGTGTACGTCCGCGCCCGCGACAGATGGGGACGACCGCAGCGAGG
CCGGCTCCTACTTGGGTGACGGTGGCGGCTGGGCGGACGGGAGCCCCGGG
CCCGACGGTGCCAGTGAGGAGGAGGATGAGGACGACGGC
back to top