mRNA_H-canaliculatus_M_contigs7717.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7717.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7717.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G885_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.030e-29
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKV 189
            VN+GLT+ +KPTLF +AEFW+LQ+PKLA MIVVS+ AGSLCR+FCPADD GYIMTSKNSWFK 
Sbjct:   92 VNIGLTLWIKPTLFHNAEFWVLQVPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFKA 154
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Y0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.140e-28
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            VN+GLT+ + PTLFQ+A+FW+LQ+PKLA MIVVSV AGSLCRYFCPADD GYIMTSKNSWFKV+
Sbjct:   13 VNIGLTLWIHPTLFQNAQFWVLQVPKLACMIVVSVLAGSLCRYFCPADDTGYIMTSKNSWFKVN 76
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR81_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.490e-28
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            VN+GLT+ ++PTLFQ+AEFW+LQ+PKLA MI VS+ AGSLCRYFCPADD GYIMTSKNSWFKV+
Sbjct:  155 VNIGLTLWIQPTLFQNAEFWVLQVPKLACMIAVSILAGSLCRYFCPADDTGYIMTSKNSWFKVN 218
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DV42_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.960e-14
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            V L LT V +P     + FWL+QLPKL +M+VVS+  G +CR FC  D+ GYIMT+K+S FKV+
Sbjct:  117 VMLVLTFVYEPQWLHESRFWLMQLPKLVIMMVVSLCGGIVCRCFCDVDEKGYIMTNKSSKFKVN 180
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQQ2_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 3.280e-14
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   13 LTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            LT + +P L     FWLLQLPKL +M++VS+  G +CRYFC  D+ GYI+T+K+S FKV+
Sbjct:  127 LTYIYQPWLLTSVRFWLLQLPKLGVMVLVSLLGGIVCRYFCDVDEKGYIITNKSSKFKVN 186
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T149_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.410e-14
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            V L LT + +P       FW++QLPKL +M+VVS+F G +CR FC  D+ GYIMT+K+S FKV+
Sbjct:  138 VMLVLTFIYEPQWLHETRFWMMQLPKLVVMMVVSLFGGIICRCFCDVDEKGYIMTNKSSKFKVN 201
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFZ5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.950e-14
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            V L LT   +P     + FWL+QLPKL +M+VVS+  G +CRYFC  D+ GYIMT+K+S FKV+
Sbjct:  109 VMLVLTYFYEPQWLLKSHFWLMQLPKLVVMMVVSLVGGIICRYFCDVDEKGYIMTNKSSKFKVN 172
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XMZ5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.930e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            V L LT      LF + EFWL QLPK+A M++VS+  G +CR+FC  D  GYIMT+KNS FKV+
Sbjct:  118 VMLVLTYFFHADLFTNPEFWLSQLPKVACMMLVSLLGGLICRHFCRVDQKGYIMTNKNSAFKVN 181
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BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3C0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.730e-14
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            + L LT +  P  F    FWL+QLPKL  M++VS+  G +CR FC  DD GYI+T+KNS FKV+
Sbjct:  133 ILLVLTALYSPQYFSDTTFWLMQLPKLGCMMLVSLLGGIICRCFCSVDDKGYIITNKNSAFKVN 196
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL63_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 1.150e-13
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDMGYIMTSKNSWFKVS 192
            V L LT +  P L    +FWL+QLPKL +M+ VS+  G +CRYFC  D+ GYI+T+K+S FKV+
Sbjct:  116 VMLILTDIYAPELLSSLDFWLMQLPKLGVMMFVSLLGGLVCRYFCDVDEKGYIITNKSSKFKVN 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7717.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.030e-2977.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.140e-2879.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.490e-2878.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.960e-1453.13protein (Fragment) n=3 Tax=Phytophthora fragariae ... [more]
Uncharacterized3.280e-1453.33protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized3.410e-1451.56protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A3... [more]
Uncharacterized5.950e-1453.13protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]
Uncharacterized7.930e-1454.69protein (Fragment) n=1 Tax=Aphanomyces stellatus T... [more]
Uncharacterized8.730e-1451.56protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Uncharacterized1.150e-1351.56protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7717contigH-canaliculatus_M_contigs7717:202..1307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR81
Model size192
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue4.08e-29
EggNOG OGs2CMNQ@1|root,2QR22@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_010660.1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.1603982-CDS-H-canaliculatus_M_contigs7717:201..3241696854109.1603982-CDS-H-canaliculatus_M_contigs7717:201..324Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7717 202..324 -
1696854109.1728754-CDS-H-canaliculatus_M_contigs7717:1238..13071696854109.1728754-CDS-H-canaliculatus_M_contigs7717:1238..1307Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7717 1239..1307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7717.1.1prot_H-canaliculatus_M_contigs7717.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7717 202..1307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7717.1.1

>prot_H-canaliculatus_M_contigs7717.1.1 ID=prot_H-canaliculatus_M_contigs7717.1.1|Name=mRNA_H-canaliculatus_M_contigs7717.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
VNLGLTVVLKPTLFQHAEFWLLQLPKLALMIVVSVFAGSLCRYFCPADDM
GYIMTSKNSWFKVS
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mRNA from alignment at H-canaliculatus_M_contigs7717:202..1307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7717.1.1 ID=mRNA_H-canaliculatus_M_contigs7717.1.1|Name=mRNA_H-canaliculatus_M_contigs7717.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7717:202..1307- (Hapterophycus canaliculatus Oshoro7m male)
GTCAACCTCGGGCTCACGGTGGTTCTCAAGCCCACGCTGTTCCAGCATGC
GGAGTTCTGGCTGCTACAGGTTTGTGGGCGTTTTCCCGTTTTTGAATATT
TACCTCCCCTGATGGTGTGTGCCGATGGCGTGTGACGGTGACGGTACGTG
CTACAGCCCGTCATTTGTGTGGGTGTTGTCAATGTTGCTTCTTGTAGCGT
CTCCTGTCCTGAAATCGATTTTCGGAATTCTTTGGTTCCTAGCTTTATGC
TGATGTCCGTGACGCATCTCACTGGACATCGACTTCCGCTGACCTTTGAT
GGCTACTGTTCCATAACTTCGATTCGATTGACACTTGTCGTGCATGTACG
GTGCTCCCGGCAAAATCGGGAATGCTCGGATCTCTCTTATCATACGCAAA
GGCGGTAGTTTTCCAGACGATGATAGAGATCACCTGAGCAATCTCGTTCC
TCTCGCAGAGCCCTGAAGGGCTCAATCGTTTTGAAGTTCGTGACACAGAA
CGTGCAGAAAGTAAGCCGCACACGTCTTTAATACGTGGCACTTCTCAGCC
CATTCGACTTCACTCGCCACCGCTTGAAGCCTTGTTCGTTCTCGAATACC
GTTGTGTGGCATCCTATCGGCTCAGGGCGATGTGTGGGGCTTCTGTTGTG
TGTTGATACGCAGGTGCTTGTGCGTTGAGTTGATAGCCGCTCTACCAGGT
GCCGCACGTCGGATGCTTTCCTTACAAGCCCGCTCTTCATCGTATCCCCT
CCTAGCCTGCTGCTTTGATCGCATTCCGGATGTCTGCCATCCATCCTTCA
ACCCCACTCCCCGTTTCCTGCTTTATTTTCTTCTCAAAGTTGTACATTGC
CCGTTCATCGTCTCTCCCGTGTGAAGATAACTCCCGCCTGTTCGAACGAC
CCTGACTTACGCCTCTTTCTCTTTTCCCGCCGTGCTCTTGCAATGTTTTG
GCCTCGCTCTGCTCGATGATTTCGTCGCTGCAGTTACCGAAGCTCGCTCT
GATGATCGTGGTGTCGGTGTTTGCTGGGAGCCTGTGCCGGTACTTTTGCC
CCGCCGATGACATGGGCTACATCATGACGTCCAAGAACTCGTGGTTTAAG
GTCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7717:202..1307-

>mRNA_H-canaliculatus_M_contigs7717.1.1 ID=mRNA_H-canaliculatus_M_contigs7717.1.1|Name=mRNA_H-canaliculatus_M_contigs7717.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7717:202..1307- (Hapterophycus canaliculatus Oshoro7m male)
GTCAACCTCGGGCTCACGGTGGTTCTCAAGCCCACGCTGTTCCAGCATGC
GGAGTTCTGGCTGCTACAGTTACCGAAGCTCGCTCTGATGATCGTGGTGT
CGGTGTTTGCTGGGAGCCTGTGCCGGTACTTTTGCCCCGCCGATGACATG
GGCTACATCATGACGTCCAAGAACTCGTGGTTTAAGGTCAGC
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