mRNA_H-canaliculatus_M_contigs77151.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77151.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77151.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Match: Peptidase (M12B domain-containing protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U6V4_9GAMM)

HSP 1 Score: 244 bits (624), Expect = 7.550e-74
Identity = 126/169 (74.56%), Postives = 144/169 (85.21%), Query Frame = 1
Query:    7 QTRIAVLHESADAGDSLPVFLNALSLRDDGRIEQALAELDVIAKAYPAGALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDAIAMEQLGDTQGARQALIELRDRHTALSLPLDFRWPAGSVLSRYWFDRAHRRLAIVEERIAGACTVSTQEQR 513
            QTRIAVL ESADAG SLPVFL ALSLRD G +++AL  L  IA A PAG+LTDDALYISAYL VMDRYDFAAAR AL+TL QRFP+SAYSDSAQYLDAIA+EQLGDT  AR  L+ LRDRHTAL+LPL+FRWP GSVLSRYWFDRA RRLAIVE+R+A A  + +++++
Sbjct:   86 QTRIAVLQESADAGQSLPVFLKALSLRDAGEMDKALLALGTIASADPAGSLTDDALYISAYLLVMDRYDFAAARKALHTLDQRFPDSAYSDSAQYLDAIALEQLGDTLAARDQLMRLRDRHTALNLPLEFRWPRGSVLSRYWFDRADRRLAIVEQRLASASRLDSRQRQ 254          
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Match: Outer (membrane protein assembly factor BamD n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2P5E2_9GAMM)

HSP 1 Score: 237 bits (604), Expect = 1.190e-70
Identity = 122/169 (72.19%), Postives = 140/169 (82.84%), Query Frame = 1
Query:    7 QTRIAVLHESADAGDSLPVFLNALSLRDDGRIEQALAELDVIAKAYPAGALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDAIAMEQLGDTQGARQALIELRDRHTALSLPLDFRWPAGSVLSRYWFDRAHRRLAIVEERIAGACTVSTQEQR 513
            QTRIAVL ES+DAG SLPVFL ALSLRD G +E AL  LD IA A PAG LTDDALYISAYLQVMDRYDF +AR  L  L+QRFP+SAYSDSA YLDAIA+EQLG+TQ AR+ L+ELR RHTAL LP++FRWP GSVLSRYWFDRA RRLAIV++R+A A  + + E++
Sbjct:   83 QTRIAVLQESSDAGQSLPVFLRALSLRDAGDMEAALQALDTIASADPAGTLTDDALYISAYLQVMDRYDFKSARSVLAILEQRFPDSAYSDSAYYLDAIALEQLGETQQAREKLVELRARHTALDLPMNFRWPRGSVLSRYWFDRADRRLAIVDQRLASASQLGSVEEQ 251          
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Match: Peptidase (M12B domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6ENC8_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 5.210e-52
Identity = 96/166 (57.83%), Postives = 123/166 (74.10%), Query Frame = 1
Query:    7 QTRIAVLHESADAGDSLPVFLNALSLRDDGRIEQALAELDVIAKAYPAGALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDAIAMEQLGDTQGARQALIELRDRHTALSLPLDFRWPAGSVLSRYWFDRAHRRLAIVEERIAGACTVSTQ 504
            QTRIAVLHE+ DAGD L  FL AL  RDDG  + +L+ LD +A     G L DDALY+ AYLQ+M+ +DF  AR  L  L++RFP++AY+DSA YL AIA+EQ G+T+ AR+ L +LR RHT+LSLPL FRWP G+ LSRYWFDRA RR+ I++ER+A A  V ++
Sbjct:   88 QTRIAVLHEARDAGDDLEPFLAALDARDDGDWQASLSLLDELAADDAGGVLVDDALYLRAYLQLMELHDFPGARDTLVELRRRFPDTAYADSADYLAAIALEQSGETRAARRMLDDLRHRHTSLSLPLGFRWPRGTALSRYWFDRADRRIDIIDERLATAGRVKSE 253          
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Match: ASH (domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357I6Z5_9GAMM)

HSP 1 Score: 114 bits (285), Expect = 2.280e-27
Identity = 64/158 (40.51%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    4 AQTRIAVLHESADAGDS--LPVFLNALSLRDDGRIEQALAELDVIAKAYPAGALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDAIAMEQLGDTQGARQALIELRDRHTALSLPL-DFRWPAGSVLSRYWFDRAHRRLAIVE 468
            A  R+ VL ES+  GDS  +  +  AL+ RD GR E A+ +LD +     AG + DDALY+  Y+ + D   +  A   +  L+ RFPES+Y D+A Y++AIA +++GD   AR+   ELR RHT LS+ + +  WP  + LSR WF+R  + LA ++
Sbjct:  188 ASVRVPVLTESSRQGDSGVMHHYTRALAFRDIGRSEDAIQDLDTLLDQDDAGYMADDALYLKGYIYLADLKAYQDAYDTMLELRFRFPESSYYDTALYVEAIAQQEMGDVDLARELFDELRRRHTGLSIEMFNLEWPKDNYLSRLWFERGSQALAALD 345          
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Granulosicoccus TaxID=437504 RepID=A0A2Z2NSE7_9GAMM)

HSP 1 Score: 79.3 bits (194), Expect = 2.300e-14
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   46 GDSLPVFLNALSLRDDGRIEQALAELDVIAKAYPAGALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDAIAMEQLGDTQGARQALIELRDRHTALSLPLDFRWPAGSVLSRYWFDRAHRRL 456
            GD   ++L+AL +RD+G +E A  +LDV+   +P G L DDALY+  Y+Q+M                               +AIA +Q+G+   AR+  ++LR RHT +   L       +++SR WFDRA+  L
Sbjct:  206 GDDFDLYLSALDMRDEGDLEGASMQLDVVHTLFPDGYLADDALYLQGYIQLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEAIAQQQIGNDSVAREIFLDLRYRHTGIDT-LGITMAKDNLVSRLWFDRANSAL 341          
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Match: Outer (membrane protein assembly factor BamD (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M2GKL3_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 3.420e-11
Identity = 45/147 (30.61%), Postives = 72/147 (48.98%), Query Frame = 1
Query:   43 AGDSLPVFLNALSLRDDGRIEQALAELDVIAKAYPAGALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDAIAMEQLGDTQGARQALIELRDRHTALSLPL-DFRWPAGSVLSRYWFDRAHRRLAIVEERIA 480
            A   L  FL AL+LR+ G+  +A+A  D + + +P   L DDA ++ A++ +                          D+A Y   IA+E++G    AR+    L+DRHTA+ LPL    +P  +  SR WF +A ++L ++  R A
Sbjct:  126 AAPVLRPFLKALNLRERGKFAEAIAVCDSLIENFPRSYLADDARHLIAFIYLTXXXXXXXXXXXXXXXXXXXXXXXXXDNAYYGLGIALEKMGQFDRARKMFQTLKDRHTAIKLPLGQVSFPRDNYFSRLWFRKAEQQLEMLAVRRA 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77151.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Peptidase7.550e-7474.56M12B domain-containing protein n=1 Tax=Granulosico... [more]
Outer1.190e-7072.19membrane protein assembly factor BamD n=1 Tax=Gran... [more]
Peptidase5.210e-5257.83M12B domain-containing protein n=1 Tax=Gammaproteo... [more]
ASH2.280e-2740.51domain-containing protein n=1 Tax=Gammaproteobacte... [more]
Uncharacterized2.300e-1432.85protein n=2 Tax=Granulosicoccus TaxID=437504 RepID... [more]
Outer3.420e-1130.61membrane protein assembly factor BamD (Fragment) n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77151contigH-canaliculatus_M_contigs77151:4..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size513
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.1283798-CDS-H-canaliculatus_M_contigs77151:3..5161696854109.1283798-CDS-H-canaliculatus_M_contigs77151:3..516Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77151 4..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77151.1.1prot_H-canaliculatus_M_contigs77151.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77151 4..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77151.1.1

>prot_H-canaliculatus_M_contigs77151.1.1 ID=prot_H-canaliculatus_M_contigs77151.1.1|Name=mRNA_H-canaliculatus_M_contigs77151.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=171bp
AAQTRIAVLHESADAGDSLPVFLNALSLRDDGRIEQALAELDVIAKAYPA
GALTDDALYISAYLQVMDRYDFAAARVALNTLQQRFPESAYSDSAQYLDA
IAMEQLGDTQGARQALIELRDRHTALSLPLDFRWPAGSVLSRYWFDRAHR
RLAIVEERIAGACTVSTQEQR
back to top

mRNA from alignment at H-canaliculatus_M_contigs77151:4..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77151.1.1 ID=mRNA_H-canaliculatus_M_contigs77151.1.1|Name=mRNA_H-canaliculatus_M_contigs77151.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=513bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77151:4..516- (Hapterophycus canaliculatus Oshoro7m male)
GCGGCGCAGACACGTATCGCGGTATTGCATGAATCTGCTGATGCTGGCGA TTCACTGCCAGTGTTTTTAAACGCGTTGAGTTTGCGAGATGACGGCCGCA TTGAGCAGGCACTTGCAGAGTTGGATGTGATTGCCAAAGCGTACCCTGCG GGTGCACTAACCGATGATGCCTTGTACATCAGTGCCTATCTGCAAGTTAT GGATCGCTATGATTTCGCTGCGGCGAGAGTTGCCTTGAATACCTTGCAGC AACGCTTTCCTGAATCAGCTTATTCTGATTCAGCCCAGTATCTTGATGCC ATCGCTATGGAGCAACTTGGTGACACGCAAGGTGCCCGTCAAGCGCTGAT AGAATTGCGTGACAGGCATACTGCATTGAGCCTGCCGTTAGATTTCCGGT GGCCTGCAGGTAGCGTACTGTCGCGTTACTGGTTTGATCGTGCCCACCGA AGACTGGCTATTGTCGAAGAGCGGATAGCAGGCGCCTGTACCGTCTCCAC ACAGGAACAACGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77151:4..516-

>mRNA_H-canaliculatus_M_contigs77151.1.1 ID=mRNA_H-canaliculatus_M_contigs77151.1.1|Name=mRNA_H-canaliculatus_M_contigs77151.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=513bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77151:4..516- (Hapterophycus canaliculatus Oshoro7m male)
GCGGCGCAGACACGTATCGCGGTATTGCATGAATCTGCTGATGCTGGCGA
TTCACTGCCAGTGTTTTTAAACGCGTTGAGTTTGCGAGATGACGGCCGCA
TTGAGCAGGCACTTGCAGAGTTGGATGTGATTGCCAAAGCGTACCCTGCG
GGTGCACTAACCGATGATGCCTTGTACATCAGTGCCTATCTGCAAGTTAT
GGATCGCTATGATTTCGCTGCGGCGAGAGTTGCCTTGAATACCTTGCAGC
AACGCTTTCCTGAATCAGCTTATTCTGATTCAGCCCAGTATCTTGATGCC
ATCGCTATGGAGCAACTTGGTGACACGCAAGGTGCCCGTCAAGCGCTGAT
AGAATTGCGTGACAGGCATACTGCATTGAGCCTGCCGTTAGATTTCCGGT
GGCCTGCAGGTAGCGTACTGTCGCGTTACTGGTTTGATCGTGCCCACCGA
AGACTGGCTATTGTCGAAGAGCGGATAGCAGGCGCCTGTACCGTCTCCAC
ACAGGAACAACGA
back to top