mRNA_H-canaliculatus_M_contigs7705.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7705.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7705.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: T-complex (protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.130e-16
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 137
            GTCDMKEQGIFETLIGKQQQLLLATQVVKMILK+DDVIMMGNY+
Sbjct:  493 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKVDDVIMMGNYE 536
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLE3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.210e-13
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 3 
Query:    9 TCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 137
            +CDMKE GIFETLIGKQ+Q+ LATQVVKMILKIDDVI MGNYQ
Sbjct:  141 SCDMKELGIFETLIGKQEQIQLATQVVKMILKIDDVISMGNYQ 183
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNY0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.370e-13
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 AGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 137
            AGT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDVIM G YQ
Sbjct:  112 AGTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVIMHGAYQ 156
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: T-complex (protein 1 subunit epsilon n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C074_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 7.430e-12
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 134
            GTCDMKEQ +FETLIGKQQQ+ LATQVV+MILKIDDVIM G+Y
Sbjct:  493 GTCDMKEQHVFETLIGKQQQMQLATQVVRMILKIDDVIMEGSY 535
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: T-complex (protein 1 subunit epsilon n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNZ2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.430e-12
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 AGTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ 137
            AGT DMK+Q +FETLIGKQQQLLLATQVVKMILKIDDVIM G YQ
Sbjct:  492 AGTNDMKDQLVFETLIGKQQQLLLATQVVKMILKIDDVIMHGAYQ 536
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNU9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.220e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 134
            GT DMKEQ +FETLIGKQQQLLLATQVVKMILKIDDVIM G Y
Sbjct:  391 GTNDMKEQLVFETLIGKQQQLLLATQVVKMILKIDDVIMHGQY 433
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: T-complex (protein 1 subunit epsilon n=4 Tax=Micromonas TaxID=38832 RepID=C1E3N3_MICCC)

HSP 1 Score: 72.8 bits (177), Expect = 2.500e-11
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 134
            GT DMKEQG+FETLIGKQQQ+LLATQVVK+ILKIDDVI  G Y
Sbjct:  493 GTNDMKEQGVFETLIGKQQQMLLATQVVKLILKIDDVITSGKY 535
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: T-complex (protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.520e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 134
            GT DMK Q IFETLIGKQQQLLLATQVVKMILKIDD+I MG Y
Sbjct:  500 GTADMKTQRIFETLIGKQQQLLLATQVVKMILKIDDIITMGQY 542
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: T-complex (protein 1 subunit epsilon n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2X4S9_CAPBA)

HSP 1 Score: 68.6 bits (166), Expect = 3.280e-11
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 134
            GT DM+EQ +FETLIGKQQQLLLATQVVKMILKIDDVI    Y
Sbjct:   95 GTNDMREQNVFETLIGKQQQLLLATQVVKMILKIDDVITPSEY 137
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BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426XZN9_ENSVE)

HSP 1 Score: 66.2 bits (160), Expect = 3.470e-11
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:    6 GTCDMKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNY 134
            GT +MKEQ +FETLIGKQQQ+LLATQVVKMILKIDDVI    Y
Sbjct:   16 GTNNMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSAY 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7705.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T-complex3.130e-1695.45protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID... [more]
Hypothetical2.210e-1386.05protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Hypothetical3.370e-1386.67protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
T-complex7.430e-1283.72protein 1 subunit epsilon n=1 Tax=Pythium insidios... [more]
T-complex7.430e-1286.67protein 1 subunit epsilon n=1 Tax=Florenciella par... [more]
Hypothetical2.220e-1188.37protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
T-complex2.500e-1183.72protein 1 subunit epsilon n=4 Tax=Micromonas TaxID... [more]
T-complex2.520e-1186.05protein 1 subunit epsilon n=1 Tax=Tribonema minus ... [more]
T-complex3.280e-1181.40protein 1 subunit epsilon n=1 Tax=Capsicum baccatu... [more]
Uncharacterized3.470e-1179.07protein n=1 Tax=Ensete ventricosum TaxID=4639 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7705contigH-canaliculatus_M_contigs7705:623..1282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FI32
Preferred nameCCT5
PFAMsCpn60_TCP1
Model size660
Max annot lvl2759|Eukaryota
KEGG koko:K09497
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005886,GO:0005911,GO:0006457,GO:0006458,GO:0008150,GO:0009506,GO:0009987,GO:0016020,GO:0030054,GO:0032991,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0055044,GO:0061077,GO:0071944,GO:0101031
Exons1
Evalue8.97e-16
EggNOG OGsCOG0459@1|root,KOG0357@2759|Eukaryota
Descriptionunfolded protein binding
Cds size123
COG categoryO
BRITEko00000,ko03036,ko03110,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.661112-UTR-H-canaliculatus_M_contigs7705:622..6391696854108.661112-UTR-H-canaliculatus_M_contigs7705:622..639Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7705 623..639 +
1696854108.6871223-UTR-H-canaliculatus_M_contigs7705:762..12821696854108.6871223-UTR-H-canaliculatus_M_contigs7705:762..1282Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7705 763..1282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.673214-CDS-H-canaliculatus_M_contigs7705:639..7621696854108.673214-CDS-H-canaliculatus_M_contigs7705:639..762Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7705 640..762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7705.1.1prot_H-canaliculatus_M_contigs7705.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7705 640..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7705.1.1

>prot_H-canaliculatus_M_contigs7705.1.1 ID=prot_H-canaliculatus_M_contigs7705.1.1|Name=mRNA_H-canaliculatus_M_contigs7705.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
MKEQGIFETLIGKQQQLLLATQVVKMILKIDDVIMMGNYQ*
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mRNA from alignment at H-canaliculatus_M_contigs7705:623..1282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7705.1.1 ID=mRNA_H-canaliculatus_M_contigs7705.1.1|Name=mRNA_H-canaliculatus_M_contigs7705.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=660bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7705:623..1282+ (Hapterophycus canaliculatus Oshoro7m male)
AGGCGGGTACGTGCGACATGAAGGAGCAGGGAATCTTCGAGACCCTCATC
GGGAAGCAGCAGCAGCTCCTCCTGGCAACACAGGTCGTCAAGATGATCCT
CAAGATCGACGACGTTATCATGATGGGCAACTACCAGTAGCTAAGTCCTG
CTTGGATCATGCTGGAGAGTGGAGATGGACTAGCGGCATGCCGAACGGCA
TGATGAGCCGTCTGCGTGTGCTTTTTGTGAATCGTTGCGATCGTTGCCGG
GAGCTGTGGCTCTGGATCCTTCCCTGGATGGGGGGGTCGGTCATCGCGGA
GTAGTAAAAACGCTCGGTGTCTTTTCCTATAGTCGGGGTTGGACACAGGA
AAACGCCACCACAAAAATGCTGTGACAACTAGCCTGCTTGTATGGAATTT
ACCCGGAATTGGATGGACGGAGGGAAGGAGGGTGGCAACGCGTTCGATGG
CGTCGATCCAATCCACGGTGGTTGCGATGCGAACATGTGAACATGTATTC
CCCCGCCCCCGTTGCTCACGTGGGACCAACAACGAGGACACAAGCAAATC
CCCTCCCTCCTCGACCAAGCGGTGCGCAGTTTGTGCTCCTGTTGGAAAGA
AGAGCGAGCACAGCGGGACGAAGTCTCGCCACGAAGGATTCGAACGACGA
CGTTGCCGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7705:623..1282+

>mRNA_H-canaliculatus_M_contigs7705.1.1 ID=mRNA_H-canaliculatus_M_contigs7705.1.1|Name=mRNA_H-canaliculatus_M_contigs7705.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7705:623..1282+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGGAGCAGGGAATCTTCGAGACCCTCATCGGGAAGCAGCAGCAGCT
CCTCCTGGCAACACAGGTCGTCAAGATGATCCTCAAGATCGACGACGTTA
TCATGATGGGCAACTACCAGTAG
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