mRNA_H-canaliculatus_M_contigs77030.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77030.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77030.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD57_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.920e-17
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS DCLKAVL+AYPP+VDKHKDDEFTEQQKQWQLMRRGRY 
Sbjct:  283 FSEDCLKAVLDAYPPIVDKHKDDEFTEQQKQWQLMRRGRYV 323
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase (Fragment) n=2 Tax=Phacus inflexus TaxID=461210 RepID=A0A1L3A3V7_9EUGL)

HSP 1 Score: 68.2 bits (165), Expect = 2.650e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            F+ DCL AV EAY P+VDKHK+D+FTE+QK WQL+RRGRYA
Sbjct:  290 FAEDCLMAVAEAYVPIVDKHKNDKFTEEQKHWQLIRRGRYA 330
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U2B2P5_HEMAN)

HSP 1 Score: 67.8 bits (164), Expect = 3.730e-12
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FSSDC  AV +AY P+++KHKDD+FTE+QK+WQLMRRGRY 
Sbjct:  310 FSSDCAAAVTKAYLPIIEKHKDDDFTEKQKEWQLMRRGRYV 350
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L134_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.020e-12
Identity = 27/41 (65.85%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS +CL +V++AY P+++KHKDDEFT+Q+K+WQLMRRGRY 
Sbjct:  295 FSKECLNSVVKAYGPIIEKHKDDEFTQQEKEWQLMRRGRYV 335
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HE16_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 5.860e-12
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS +CL +V+ AY PLV KHKDDE+TEQQKQWQ MRRGRY 
Sbjct:   93 FSKECLDSVVPAYLPLVAKHKDDEYTEQQKQWQQMRRGRYV 133
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WVM6_9SPIT)

HSP 1 Score: 65.5 bits (158), Expect = 9.290e-12
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS +CL A++ AY P+V KHKDDEFT++QK+WQLMRRGRY 
Sbjct:  123 FSKECLDAIIPAYLPIVAKHKDDEFTQKQKEWQLMRRGRYV 163
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ETB1_TRICV)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-11
Identity = 27/41 (65.85%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS +CL +V++AY P+V+KHK+DEFT++QK+WQLMRRGRY 
Sbjct:  311 FSKECLNSVVDAYGPIVEKHKNDEFTQKQKEWQLMRRGRYV 351
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2PQX8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-11
Identity = 26/41 (63.41%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS +CL +V++AY P+++KHKDDE+T++QK+WQLMRRGRY 
Sbjct:  317 FSKECLNSVVKAYGPIIEKHKDDEYTQKQKEWQLMRRGRYV 357
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RVZ5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.850e-11
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS +CL  V+ AY P+++KHK+DEFT++QK+WQLMRRGRY 
Sbjct:   61 FSKECLNNVVNAYGPIIEKHKNDEFTQKQKEWQLMRRGRYV 101
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BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Match: Coproporphyrinogen (oxidase n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AEN2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.880e-11
Identity = 26/41 (63.41%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA 123
            FS + L +V++AY P+V+KHKDD+FTE++K+WQLMRRGRY 
Sbjct:   28 FSKEALNSVVKAYGPIVEKHKDDDFTEKEKEWQLMRRGRYV 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77030.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Coproporphyrinogen1.920e-1790.24oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Coproporphyrinogen2.650e-1273.17oxidase (Fragment) n=2 Tax=Phacus inflexus TaxID=4... [more]
Coproporphyrinogen3.730e-1270.73oxidase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U... [more]
Coproporphyrinogen5.020e-1265.85oxidase n=2 Tax=Leptocylindrus danicus TaxID=16351... [more]
Coproporphyrinogen5.860e-1273.17oxidase n=1 Tax=Prymnesium polylepis TaxID=72548 R... [more]
Coproporphyrinogen9.290e-1268.29oxidase (Fragment) n=1 Tax=Strombidinopsis acumina... [more]
Coproporphyrinogen1.800e-1165.85oxidase n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Coproporphyrinogen1.800e-1163.41oxidase n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=... [more]
Coproporphyrinogen1.850e-1163.41oxidase n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
Coproporphyrinogen1.880e-1163.41oxidase n=2 Tax=Minutocellus polymorphus TaxID=265... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77030contigH-canaliculatus_M_contigs77030:3..125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL60
Preferred nameCPX1
PFAMsCoprogen_oxidas
Model size123
Max annot lvl2759|Eukaryota
KEGG rclassRC00884
KEGG koko:K00228
KEGG ReactionR03220
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048046,GO:0050896
Exons1
Evalue6.9e-18
EggNOG OGsCOG0408@1|root,KOG1518@2759|Eukaryota
EC1.3.3.3
Descriptioncoproporphyrinogen oxidase activity
Cds size123
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.5393178-CDS-H-canaliculatus_M_contigs77030:2..1251696854108.5393178-CDS-H-canaliculatus_M_contigs77030:2..125Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77030 3..125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77030.1.1prot_H-canaliculatus_M_contigs77030.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77030 3..125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77030.1.1

>prot_H-canaliculatus_M_contigs77030.1.1 ID=prot_H-canaliculatus_M_contigs77030.1.1|Name=mRNA_H-canaliculatus_M_contigs77030.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
FSSDCLKAVLEAYPPLVDKHKDDEFTEQQKQWQLMRRGRYA
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mRNA from alignment at H-canaliculatus_M_contigs77030:3..125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77030.1.1 ID=mRNA_H-canaliculatus_M_contigs77030.1.1|Name=mRNA_H-canaliculatus_M_contigs77030.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77030:3..125+ (Hapterophycus canaliculatus Oshoro7m male)
TTTTCTTCCGACTGCCTTAAGGCCGTGCTGGAGGCATACCCCCCCCTCGT
GGACAAGCACAAGGACGACGAGTTCACAGAGCAGCAGAAGCAGTGGCAGC
TTATGCGGAGGGGAAGGTACGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77030:3..125+

>mRNA_H-canaliculatus_M_contigs77030.1.1 ID=mRNA_H-canaliculatus_M_contigs77030.1.1|Name=mRNA_H-canaliculatus_M_contigs77030.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77030:3..125+ (Hapterophycus canaliculatus Oshoro7m male)
TTTTCTTCCGACTGCCTTAAGGCCGTGCTGGAGGCATACCCCCCCCTCGT
GGACAAGCACAAGGACGACGAGTTCACAGAGCAGCAGAAGCAGTGGCAGC
TTATGCGGAGGGGAAGGTACGCA
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