mRNA_H-canaliculatus_M_contigs76872.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76872.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76872.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AFN2_9BACT)

HSP 1 Score: 265 bits (678), Expect = 5.670e-83
Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K  +EFLKQYGFWIG+A+ILLGALGVWH VTS LVAEN+SRA +IRG++STVTR+R E+ +HPNP SHE+ME +IE REAEVLKAWQTV+DAQRDILVWPEKELT+ELIDEYRDLIPIE+++SFP L E+  ET L NQYRYYI  VLP IAKIAKAEWTA FDSASA
Sbjct:    5 KPAIEFLKQYGFWIGIALILLGALGVWHMVTSELVAENESRASKIRGDVSTVTRVRGEVPNHPNPLSHEKMEALIEDREAEVLKAWQTVYDAQRDILVWPEKELTQELIDEYRDLIPIEEHISFPILEEEKKETALLNQYRYYIANVLPDIAKIAKAEWTAKFDSASA 172          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5TTU6_9BACT)

HSP 1 Score: 228 bits (580), Expect = 8.160e-73
Identity = 113/167 (67.66%), Postives = 132/167 (79.04%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSAS 501
            K  LEFLK+YGFW+ V +ILLG+LGVW  VTS LVAE+DSRA  IRG+IS V  +RSE+  HPN  SHE+MEEMIE RE +VL AW TVF+ Q+DILVWPE+EL+ EL+D YRD IPIE Y+SFP L EQ + T L  QYRYYI  VLP IAKIAKAEWTASFD++S
Sbjct:    5 KPALEFLKKYGFWLSVGVILLGSLGVWFKVTSDLVAESDSRASAIRGDISKVKSVRSEIPTHPNAISHEKMEEMIEKREDQVLDAWSTVFEKQKDILVWPEEELSDELLDHYRDKIPIESYISFPILEEQKIPTALLQQYRYYIANVLPSIAKIAKAEWTASFDTSS 171          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Putative (membrane protein n=3 Tax=Rhodopirellula TaxID=265488 RepID=M5TK01_9BACT)

HSP 1 Score: 222 bits (566), Expect = 9.760e-67
Identity = 109/168 (64.88%), Postives = 131/168 (77.98%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K  LEFLK+YGFWI V IILLG++GVW  VT  LVAE+D RA  IRG++S V  +R+E+ +HPN  SHE+ME+MIE RE +VL AW TVF+ Q+DILVWPEKELT EL+D YRD IPIE Y+SFP L E+ + T L  QYRYYI  VLP IAKIAKAEWTA FD+++A
Sbjct:    5 KPALEFLKKYGFWIAVGIILLGSVGVWFKVTGDLVAESDRRASAIRGDVSQVKSVRAEVPEHPNSLSHEEMEKMIENREDQVLDAWSTVFEKQKDILVWPEKELTSELLDHYRDKIPIESYISFPILDEEKIPTALLQQYRYYIANVLPDIAKIAKAEWTAKFDTSNA 172          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Multicopper (oxidase n=1 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1BJY7_RHOIS)

HSP 1 Score: 204 bits (519), Expect = 9.320e-60
Identity = 99/168 (58.93%), Postives = 124/168 (73.81%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K       +YGFWIG   I LGAL +W  VT  LV EN SRAG+I+G++S V+ +RSEL +HPNPTS E M+ +IEAR+ EVL+AWQ V+DAQRDILVWPE+ELTKE +DE+RDL+PIE ++++PP P Q+  T   N Y +YI  VLP IA+IAKAEW A F S SA
Sbjct:    5 KQAFASAAKYGFWIGTGTITLGALAIWFIVTGNLVKENTSRAGKIKGDVSAVSSLRSELNEHPNPTSKEAMDLLIEARQDEVLQAWQEVYDAQRDILVWPEEELTKEFVDEFRDLVPIEAHIAYPPEPGQEKPTSFLNTYAFYIKNVLPSIAEIAKAEWEAEFRSNSA 172          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BFT7_9BACT)

HSP 1 Score: 202 bits (514), Expect = 4.070e-59
Identity = 102/168 (60.71%), Postives = 125/168 (74.40%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K  +EF K+ GFWI V +ILLG++G+W  VTS LVAE+D+RA +I+G+I  VT +R EL  HPNP SH +MEEMI+ RE +VL AW  V++ Q+DILVWPE +LT EL DEYR+ IPIE YV FP L +Q +E  L  QYR YIDK LP IAKIA AEWTA FDS +A
Sbjct:    5 KPAIEFFKKNGFWIAVGLILLGSVGIWFKVTSDLVAESDARASKIKGDIGKVTSVRGELNTHPNPISHAKMEEMIDTREEQVLDAWTNVYEKQKDILVWPE-DLTDELKDEYREKIPIELYVDFPTLDDQKLEPFLLQQYRMYIDKTLPKIAKIADAEWTAKFDSQTA 171          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: hypothetical (protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E651AFB)

HSP 1 Score: 198 bits (503), Expect = 2.050e-57
Identity = 95/168 (56.55%), Postives = 123/168 (73.21%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K       ++GFWIG   I LGAL +W  VTS+L  EN+SR  +I+G++S V+ +RSEL  HPNPTS E ME +I+ R+ EVL+AWQ V+DAQR ILVWPE+EL+ +LID +RD +PIE+++ FPP P+Q+V T  RNQY +YI  VLP IA+IAKAEW A F SA A
Sbjct:    5 KQSFAVAAKHGFWIGTGTITLGALVIWFLVTSSLREENESRTQKIKGDVSAVSSLRSELTTHPNPTSQEAMEGLIDGRQDEVLQAWQEVYDAQRGILVWPEEELSSDLIDWFRDKMPIEKFIDFPPEPDQEVPTSFRNQYAFYIKNVLPSIAEIAKAEWQAEFKSAGA 172          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5YJN5_9BACT)

HSP 1 Score: 196 bits (499), Expect = 7.350e-57
Identity = 99/165 (60.00%), Postives = 121/165 (73.33%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDS 495
            K  +EF +++GFWI V +ILLG+ G+W  VT  LVAE++SRA  IRG+IS V  +R EL +HPNP SH +MEEMI  RE +VL+AW  V++ Q+DILVWPE  LT EL DEYR  IPIEQYV FP   E  ++T L NQY+ YID+ LP IAKIA AEWTA FDS
Sbjct:    5 KPAIEFFQKHGFWIAVGLILLGSAGIWFKVTGDLVAESESRASAIRGDISKVNSVRGELDEHPNPLSHAKMEEMIATREDQVLEAWTDVYEKQKDILVWPEN-LTDELKDEYRTKIPIEQYVEFPVPDEMKLQTFLLNQYKMYIDRTLPKIAKIADAEWTAKFDS 168          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W2J1_9BACT)

HSP 1 Score: 194 bits (493), Expect = 5.720e-56
Identity = 90/168 (53.57%), Postives = 122/168 (72.62%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K       +YGFWIG  +I +GAL +W  VT  LV EN+SRA +I+GE+S+V+ +RSEL++HPN  S   M+ ++E R+ EVL+ WQ V+DAQRDILVWPE+EL +E +DE+RDL+PIE +++FPP P+++  T   N Y +YI  VLP IA+IAKAEW A F SA A
Sbjct:    5 KQSFAAAAKYGFWIGTGVITIGALAIWFIVTGTLVEENESRAQKIKGEVSSVSALRSELSEHPNEISKAAMDLLVEGRQEEVLQVWQEVYDAQRDILVWPEEELGEEFVDEFRDLVPIETHIAFPPEPDEEKPTSFLNLYAFYIKNVLPSIAEIAKAEWEAEFRSAGA 172          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D9JIV7_9BACT)

HSP 1 Score: 182 bits (463), Expect = 2.570e-54
Identity = 88/168 (52.38%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K       + GFWIG   I LGAL +W  VT  LV  N+SR  +I+ ++S V+ +RSEL +HPN  S   M+  +E R+AEVL+ WQ V+DAQRDILVWPE+ELT E +DE+RDL+PIE ++++PP   Q++ +  RN Y YYI  VLP IA+IAKAEW A F SA A
Sbjct:    5 KQSFAAAAKXGFWIGTGTITLGALVIWFLVTGELVEXNNSRTSKIKSDVSAVSTLRSELPEHPNQXSKAAMDXXVEGRQAEVLEVWQEVYDAQRDILVWPEEELTTEFVDEFRDLMPIETHIAYPPEDGQEIPSSYRNLYAYYIKDVLPSIAEIAKAEWEAEFRSAGA 172          
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Match: Uncharacterized (protein n=6 Tax=Rhodopirellula TaxID=265488 RepID=Q7UV55_RHOBA)

HSP 1 Score: 189 bits (481), Expect = 3.260e-54
Identity = 91/168 (54.17%), Postives = 119/168 (70.83%), Query Frame = 1
Query:    1 KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEISTVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWPEKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPGIAKIAKAEWTASFDSASA 504
            K       +YGFWIG   I LGAL +W  VT ALV EN+SR  +I+ ++S V+ +RSEL++HPN  S   M+ ++E R+AEVL+ WQ V+DAQRDILVWPE+ELT E +DE+RDL+PIE +++ PP   Q++ +  RN Y YYI  VLP IA+IAKAEW A F SA A
Sbjct:    5 KQSFAAAAKYGFWIGTGTITLGALVIWFMVTGALVEENNSRTSKIKSDVSAVSTLRSELSEHPNQISKAAMDLLVEGRQAEVLQVWQEVYDAQRDILVWPEEELTTEFVDEFRDLMPIETHIAHPPEDGQEIPSSYRNLYAYYIKDVLPSIAEIAKAEWEAEFRSAGA 172          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76872.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Uncharacterized5.670e-8377.38protein n=1 Tax=Rhodopirellula pilleata TaxID=2714... [more]
Uncharacterized8.160e-7367.66protein (Fragment) n=1 Tax=Rhodopirellula sallenti... [more]
Putative9.760e-6764.88membrane protein n=3 Tax=Rhodopirellula TaxID=2654... [more]
Multicopper9.320e-6058.93oxidase n=1 Tax=Rhodopirellula islandica TaxID=595... [more]
Uncharacterized4.070e-5960.71protein n=1 Tax=Planctomycetes bacterium Poly21 Ta... [more]
hypothetical2.050e-5756.55protein n=2 Tax=unclassified Rhodopirellula TaxID=... [more]
Uncharacterized7.350e-5760.00protein n=1 Tax=Rhodopirellula solitaria TaxID=252... [more]
Uncharacterized5.720e-5653.57protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2... [more]
Uncharacterized2.570e-5452.38protein (Fragment) n=1 Tax=Rhodopirellula sp. TaxI... [more]
Uncharacterized3.260e-5454.17protein n=6 Tax=Rhodopirellula TaxID=265488 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76872contigH-canaliculatus_M_contigs76872:15..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog595460.RRSWK_03428
Model size504
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.6e-67
EggNOG OGs28NU4@1|root,2ZBSI@2|Bacteria,2IYYS@203682|Planctomycetes
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.7538037-CDS-H-canaliculatus_M_contigs76872:14..5181696854106.7538037-CDS-H-canaliculatus_M_contigs76872:14..518Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76872 15..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76872.1.1prot_H-canaliculatus_M_contigs76872.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76872 15..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76872.1.1

>prot_H-canaliculatus_M_contigs76872.1.1 ID=prot_H-canaliculatus_M_contigs76872.1.1|Name=mRNA_H-canaliculatus_M_contigs76872.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=168bp
KSDLEFLKQYGFWIGVAIILLGALGVWHTVTSALVAENDSRAGRIRGEIS
TVTRIRSELADHPNPTSHEQMEEMIEAREAEVLKAWQTVFDAQRDILVWP
EKELTKELIDEYRDLIPIEQYVSFPPLPEQDVETELRNQYRYYIDKVLPG
IAKIAKAEWTASFDSASA
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mRNA from alignment at H-canaliculatus_M_contigs76872:15..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76872.1.1 ID=mRNA_H-canaliculatus_M_contigs76872.1.1|Name=mRNA_H-canaliculatus_M_contigs76872.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=504bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76872:15..518+ (Hapterophycus canaliculatus Oshoro7m male)
AAGTCCGATTTGGAATTCCTCAAGCAGTACGGCTTTTGGATCGGTGTTGC AATCATCCTTCTAGGCGCACTGGGTGTTTGGCACACGGTGACTTCGGCAC TGGTGGCCGAAAATGACAGCCGTGCTGGACGGATTCGCGGTGAGATTTCT ACGGTGACTCGGATACGATCGGAATTAGCTGATCACCCCAATCCGACCTC ACACGAACAGATGGAAGAGATGATCGAAGCACGAGAAGCGGAGGTGCTCA AGGCATGGCAGACGGTTTTCGATGCCCAACGCGACATCCTCGTTTGGCCC GAAAAAGAACTGACCAAGGAACTCATTGACGAGTACCGAGACCTCATTCC AATCGAACAGTACGTCTCTTTCCCGCCGCTTCCTGAACAAGACGTGGAAA CCGAACTCCGCAACCAATATCGCTACTACATCGATAAGGTTTTGCCAGGA ATCGCGAAGATCGCCAAAGCCGAATGGACCGCCTCATTCGATTCGGCATC CGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76872:15..518+

>mRNA_H-canaliculatus_M_contigs76872.1.1 ID=mRNA_H-canaliculatus_M_contigs76872.1.1|Name=mRNA_H-canaliculatus_M_contigs76872.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76872:15..518+ (Hapterophycus canaliculatus Oshoro7m male)
AAGTCCGATTTGGAATTCCTCAAGCAGTACGGCTTTTGGATCGGTGTTGC
AATCATCCTTCTAGGCGCACTGGGTGTTTGGCACACGGTGACTTCGGCAC
TGGTGGCCGAAAATGACAGCCGTGCTGGACGGATTCGCGGTGAGATTTCT
ACGGTGACTCGGATACGATCGGAATTAGCTGATCACCCCAATCCGACCTC
ACACGAACAGATGGAAGAGATGATCGAAGCACGAGAAGCGGAGGTGCTCA
AGGCATGGCAGACGGTTTTCGATGCCCAACGCGACATCCTCGTTTGGCCC
GAAAAAGAACTGACCAAGGAACTCATTGACGAGTACCGAGACCTCATTCC
AATCGAACAGTACGTCTCTTTCCCGCCGCTTCCTGAACAAGACGTGGAAA
CCGAACTCCGCAACCAATATCGCTACTACATCGATAAGGTTTTGCCAGGA
ATCGCGAAGATCGCCAAAGCCGAATGGACCGCCTCATTCGATTCGGCATC
CGCT
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