mRNA_H-canaliculatus_M_contigs76836.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76836.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76836.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: redoxin (domain-containing protein n=1 Tax=Acuticoccus sp. M5D2P5 TaxID=2910977 RepID=UPI001F3B126B)

HSP 1 Score: 99.0 bits (245), Expect = 3.580e-24
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGLHQV 285
            A   + E+GW   + HSLS+A+   L +Y++D     E   P+AEPGL+++NP GL  V+  SN+ S RPDL+VV DGI+G QD+ LPIRG+  +
Sbjct:   78 AAADLAEHGWRFALGHSLSLADMNALGLYVSDPVSTEETDRPFAEPGLFVVNPNGLIHVLGISNAASCRPDLDVVLDGIVGIQDKGLPIRGMRGI 172          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: redoxin (domain-containing protein n=1 Tax=Acuticoccus kandeliae TaxID=2073160 RepID=UPI001300A83E)

HSP 1 Score: 98.6 bits (244), Expect = 4.020e-24
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGL 276
            A     E GW   + HSLS+A+ + L +Y++D     E   P+AEPGL++INP GL  +++ SN+ S RPDL+V+ DGII TQ+ +LPIRGL
Sbjct:   69 AEADFREFGWRFGIGHSLSLADMEALGLYISDPRSPTETDRPFAEPGLFVINPNGLIHILSVSNTASCRPDLDVLLDGIISTQENDLPIRGL 160          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: redoxin (domain-containing protein n=1 Tax=Roseobacter sp. YSTF-M11 TaxID=2859783 RepID=UPI001C5F8B2D)

HSP 1 Score: 88.2 bits (217), Expect = 4.380e-20
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGL 276
            A   + E  W  PV + LS  + +QL ++++D    AE   P+AEPGL++IN +GL Q++  SNS SVRPDL+++ DGI   +++ +PIRGL
Sbjct:   68 AEADVAEFKWQFPVGYDLSFGQMRQLGLFVSDSIKPAETGRPFAEPGLFVINGDGLVQIVEMSNSASVRPDLDLLLDGIRSIKEKGIPIRGL 159          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: AhpC/TSA (family protein n=1 Tax=Roseomonas oryzicola TaxID=535904 RepID=UPI001ADF3998)

HSP 1 Score: 88.2 bits (217), Expect = 5.850e-20
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGLH 279
            A   + + GW  PV + L VA+ Q L +Y++D     E   P+AEPGL+LINP+G  Q++  SN+P  RPDL  +  G    Q+ N PIRG H
Sbjct:   80 AAADVAQFGWRFPVGYGLGVAQMQALGLYVSDPRSPQETDRPFAEPGLFLINPDGRVQIVDISNAPFARPDLAAIARGAKRIQEMNYPIRGTH 172          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: AhpC/TSA (family protein n=1 Tax=Roseomonas sp. HJA6 TaxID=2846776 RepID=UPI001C674E23)

HSP 1 Score: 86.7 bits (213), Expect = 2.390e-19
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRG 273
            A   + E GW  PV + L+VA+ Q+L +Y++      E   P+AEPGL+LINPEG  Q++  SN+P  RPDL  +  G    Q+ N PIRG
Sbjct:   80 ATADVAEFGWRFPVGYGLTVAQMQELGLYVSTPRSAQETDRPFAEPGLFLINPEGRVQIVDISNAPFSRPDLAAIARGAKRIQEMNYPIRG 170          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: redoxin (domain-containing protein n=1 Tax=Roseomonas lacus TaxID=287609 RepID=UPI001669458D)

HSP 1 Score: 86.3 bits (212), Expect = 3.300e-19
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   19 ENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGLH 279
            E GW  P+ + LSV + Q L +Y++D     E   P+AEPGL+LINP G  Q++  SN+P  RPDL  +  G    QD N PIRG H
Sbjct:   86 EFGWRFPLGYGLSVEQMQALGLYVSDPRSPQETDRPFAEPGLFLINPAGTVQIVDISNAPFSRPDLTAIARGAKRIQDMNYPIRGTH 172          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: Redoxin (domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T3Y8_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 4.660e-19
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGLH 279
            A   + E GW  PV + L++    +L +Y++D     E   P+AEPGL+L+NP+G  Q+I  SN+P  RPDL+++ +G+    +++ P+RG H
Sbjct:   80 AEADVAEQGWRFPVGYGLTIEHMCKLGLYVSDPRSPQETDRPFAEPGLFLVNPQGSAQIIDVSNAPFARPDLQMILNGVKTIIEKSYPVRGTH 172          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: AhpC/TSA (family protein n=2 Tax=Loktanella sp. SALINAS62 TaxID=2706124 RepID=UPI002013B790)

HSP 1 Score: 85.5 bits (210), Expect = 6.430e-19
Identity = 36/91 (39.56%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRG 273
            A++ + E GW  PVA  LS  + +QL +Y+++     E   P+AEPG+++ NP+GL Q++  SN+P  RPDL+ + +G+   Q+++ PIRG
Sbjct:   79 AQKEVSEEGWKFPVACELSQDQMRQLGLYISEPRSAQETDRPFAEPGIFVTNPDGLLQIVDISNAPFARPDLQSLLNGLKFIQEKDYPIRG 169          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: AhpC/TSA (family protein n=1 Tax=Halomonas sp. Y2R2 TaxID=2562282 RepID=A0A5C1NJU2_9GAMM)

HSP 1 Score: 85.5 bits (210), Expect = 6.580e-19
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRG 273
            A  T  E  W  PVA++LS  + ++L +Y+++     E   P+AEPGL++ NP+GL Q++  SN+P  RPDL++V +G+   +++N PIRG
Sbjct:   79 ATGTANEENWRFPVAYALSPDQMRELGLYVSEPRFSQETEWPFAEPGLFVTNPDGLLQIVDISNAPFARPDLQIVLNGLKFIREKNYPIRG 169          
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Match: AhpC/TSA (family protein n=1 Tax=Tateyamaria sp. Alg231-49 TaxID=1922219 RepID=UPI000D5598AD)

HSP 1 Score: 85.5 bits (210), Expect = 6.890e-19
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYLINPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGLHQ 282
            A+  ++E G +LP+ + L++ + + L VY++D     E   P+AEPGL++IN EGL Q++  SN+P +RPDL+ V  GI   ++ + PIRG H+
Sbjct:   80 AQAMVDEKGLSLPMGYDLNIEQMRALGVYISDPRSPQETDRPFAEPGLFVINAEGLIQMVDVSNAPFLRPDLQSVLKGIAFIRNNDYPIRGTHK 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76836.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
redoxin3.580e-2446.32domain-containing protein n=1 Tax=Acuticoccus sp. ... [more]
redoxin4.020e-2447.83domain-containing protein n=1 Tax=Acuticoccus kand... [more]
redoxin4.380e-2043.48domain-containing protein n=1 Tax=Roseobacter sp. ... [more]
AhpC/TSA5.850e-2043.01family protein n=1 Tax=Roseomonas oryzicola TaxID=... [more]
AhpC/TSA2.390e-1943.96family protein n=1 Tax=Roseomonas sp. HJA6 TaxID=2... [more]
redoxin3.300e-1945.98domain-containing protein n=1 Tax=Roseomonas lacus... [more]
Redoxin4.660e-1937.63domain-containing protein n=1 Tax=Hyphomicrobiacea... [more]
AhpC/TSA6.430e-1939.56family protein n=2 Tax=Loktanella sp. SALINAS62 Ta... [more]
AhpC/TSA6.580e-1940.66family protein n=1 Tax=Halomonas sp. Y2R2 TaxID=25... [more]
AhpC/TSA6.890e-1940.43family protein n=1 Tax=Tateyamaria sp. Alg231-49 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76836contigH-canaliculatus_M_contigs76836:9..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog631454.N177_2314
PFAMsAhpC-TSA,Redoxin
Model size288
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.87e-20
EggNOG OGsCOG1225@1|root,COG1225@2|Bacteria,1RA5K@1224|Proteobacteria,2U6EF@28211|Alphaproteobacteria,1JQAX@119043|Rhodobiaceae
DescriptionRedoxin
Cds size288
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.4874682-CDS-H-canaliculatus_M_contigs76836:8..2961696854106.4874682-CDS-H-canaliculatus_M_contigs76836:8..296Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76836 9..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76836.1.1prot_H-canaliculatus_M_contigs76836.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76836 9..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76836.1.1

>prot_H-canaliculatus_M_contigs76836.1.1 ID=prot_H-canaliculatus_M_contigs76836.1.1|Name=mRNA_H-canaliculatus_M_contigs76836.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=96bp
ARRTIEENGWTLPVAHSLSVAECQQLSVYLTDHEDGAELSGPYAEPGLYL
INPEGLTQVIATSNSPSVRPDLEVVRDGIIGTQDRNLPIRGLHQV*
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mRNA from alignment at H-canaliculatus_M_contigs76836:9..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76836.1.1 ID=mRNA_H-canaliculatus_M_contigs76836.1.1|Name=mRNA_H-canaliculatus_M_contigs76836.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=288bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76836:9..296+ (Hapterophycus canaliculatus Oshoro7m male)
GCACGCCGGACGATTGAGGAAAATGGCTGGACGCTACCCGTTGCGCACAG TTTAAGCGTTGCAGAGTGTCAGCAGTTGTCGGTGTACCTGACTGATCACG AAGATGGTGCTGAGCTCTCTGGCCCCTATGCTGAACCCGGTCTTTACCTC ATTAATCCCGAGGGGTTGACACAGGTTATCGCGACGTCTAATTCACCTAG CGTACGACCAGACCTGGAAGTGGTGCGCGATGGCATCATTGGAACTCAGG ATCGTAACTTACCTATTCGTGGGTTGCATCAGGTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76836:9..296+

>mRNA_H-canaliculatus_M_contigs76836.1.1 ID=mRNA_H-canaliculatus_M_contigs76836.1.1|Name=mRNA_H-canaliculatus_M_contigs76836.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76836:9..296+ (Hapterophycus canaliculatus Oshoro7m male)
GCACGCCGGACGATTGAGGAAAATGGCTGGACGCTACCCGTTGCGCACAG
TTTAAGCGTTGCAGAGTGTCAGCAGTTGTCGGTGTACCTGACTGATCACG
AAGATGGTGCTGAGCTCTCTGGCCCCTATGCTGAACCCGGTCTTTACCTC
ATTAATCCCGAGGGGTTGACACAGGTTATCGCGACGTCTAATTCACCTAG
CGTACGACCAGACCTGGAAGTGGTGCGCGATGGCATCATTGGAACTCAGG
ATCGTAACTTACCTATTCGTGGGTTGCATCAGGTTTAG
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