mRNA_H-canaliculatus_M_contigs76835.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76835.2.1
Unique NamemRNA_H-canaliculatus_M_contigs76835.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: hypothetical (protein n=1 Tax=Lacinutrix algicola TaxID=342954 RepID=UPI000B0EEBAD)

HSP 1 Score: 99.0 bits (245), Expect = 9.460e-24
Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   10 LTRGAINTAEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            L +GA +T++EI+  +  EW KFK  SETTI+N+EKEIK LREKI+KA+              EQ+N  LK+KL  R++ F +  I FNE +  +E+ FEREF H+M EL  ALKDL  +NV+
Sbjct:   44 LRQGAADTSKEIKTKVSSEWQKFKAESETTIENSEKEIKVLREKIAKASKSEKEKWTKQLDNLEQKNNELKEKLGKRAKAFTDGVISFNEASIANEQKFEREFLHDMSELGTALKDLFKNNVN 166          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Winogradskyella TaxID=286104 RepID=S7WZY2_9FLAO)

HSP 1 Score: 97.1 bits (240), Expect = 4.130e-23
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   31 TAEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            T+EEI+  +K +W+ FKT SET ++NTE  IK+LREKI+KA+              E +N      LA R+ +FK++ +EFNE   E EK FEREFNH+MKE+  ALKDL  +N D
Sbjct:   41 TSEEIKTTVKADWENFKTASETAVENTENNIKDLREKIAKASQNEKTRLTVQLDKLELKNXXXXXXLAERAVEFKQDIVEFNESTIESEKRFEREFNHDMKEMGTALKDLFKNNED 156          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: TolA-binding (protein n=1 Tax=Frigoriflavimonas asaccharolytica TaxID=2735899 RepID=A0A8J8K6G9_9FLAO)

HSP 1 Score: 90.1 bits (222), Expect = 3.880e-20
Identity = 53/126 (42.06%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 NEDLTRGAINTAEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            N+D+ +GA +T +EI+  +  +W+KFKT SE  IK++EK+I+ LR KI +AN              E          A+R + FKE+ IEFN  AKE+EK FEREF H+  EL  A+KD   +NV+
Sbjct:   56 NQDVKQGAKDTNDEIKTAVNSDWEKFKTNSEIAIKDSEKQIQELRIKIDQANKNDKEKLTKQLDKLEXXXXXXXXXXALRGKAFKEDMIEFNASAKENEKEFEREFKHDTDELGTAIKDFFKNNVN 181          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: hypothetical (protein n=1 Tax=Winogradskyella ludwigii TaxID=2686076 RepID=UPI0015C94019)

HSP 1 Score: 73.9 bits (180), Expect = 5.080e-14
Identity = 54/113 (47.79%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   40 EIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            EI+  +  +W KFKT SETTI+N+EKEIK LREKI+KA+XXXXXX                         FK+  I FNE +   E+ FEREF H+M EL  ALKDL  +NV+
Sbjct:   54 EIKTAVSADWQKFKTESETTIENSEKEIKLLREKIAKASXXXXXXLTQQLDKLXXXXXXXXXXXXXXXXAFKDGVISFNEASIATERKFEREFTHDMNELGTALKDLFKNNVN 166          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: hypothetical (protein n=1 Tax=Bizionia gelidisalsuginis TaxID=291188 RepID=UPI0011D82AD7)

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-12
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   34 AEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            +EEI++ +  +W +FKT SET I N E +I+ LR KI+KAN      XXXXXXXX                    + I+F+E AK +EK+F+REFNH+M EL  ALKDL  +NV+
Sbjct:   52 SEEIKMTMTSDWQQFKTASETAIDNAENQIEELRTKIAKANKNEKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMIDFSEAAKANEKSFKREFNHDMDELGTALKDLFKNNVE 166          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: hypothetical (protein n=1 Tax=Winogradskyella helgolandensis TaxID=2697010 RepID=UPI0015C174EF)

HSP 1 Score: 67.4 bits (163), Expect = 1.680e-11
Identity = 56/105 (53.33%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   64 EWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            +W KFK  SET I+NTE E        +   XXXXXXXXXXXXXX         K+A R++ F E+ I+FN+ AK +EK FEREFNH+M+EL NALKDL  +NV+
Sbjct:   62 DWKKFKATSETAIENTENEXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXKVAQRAKAFNEDMIDFNDTAKANEKKFEREFNHDMQELGNALKDLFKNNVN 166          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) TaxID=688270 RepID=E6XED8_CELAD)

HSP 1 Score: 64.7 bits (156), Expect = 1.810e-10
Identity = 54/125 (43.20%), Postives = 69/125 (55.20%), Query Frame = 1
Query:    4 EDLTRGAINTAEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            EDL     N  EE +  ++  W KF+  SE  I +TE +IKNLREKI+K+     XXXXXXXXXX                      +EFNE A+E EK+FEREF H+  EL  ALK +  +NV+
Sbjct:   42 EDLKEAVSNATEENKTYVEANWKKFENESEVAIADTETQIKNLREKITKSAKNDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEFNEDAREKEKSFEREFKHDTDELGTALKGIFKNNVE 166          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Winogradskyella eximia TaxID=262006 RepID=A0A3D9H2E4_9FLAO)

HSP 1 Score: 63.2 bits (152), Expect = 5.480e-10
Identity = 45/112 (40.18%), Postives = 53/112 (47.32%), Query Frame = 1
Query:   43 IRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            I+  +K +W KFKT SE TI+NTEKEI  LR KISKAN                                        E AK +E+ FEREF H+  EL  ALKDL  DNV+
Sbjct:   42 IKTTVKADWQKFKTASEATIENTEKEIAALRLKISKANDNEKERLTTALDKLXXXXXXXXXXXXXXXXXXXXXXXXXXETAKANEQKFEREFTHDTNELGTALKDLFKDNVN 153          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Winogradskyella TaxID=286104 RepID=A0A1G8JEZ0_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 1.970e-9
Identity = 61/126 (48.41%), Postives = 70/126 (55.56%), Query Frame = 1
Query:    1 NEDLTRGAINTAEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNVD 378
            N+DLTRGAI+TAEEI+I + QEWDKFK  SE  I+ T +EIK LR       XXXXXXXXXXXXXX                                    EREF+H+MK LN ALKDL  DNV+
Sbjct:   41 NKDLTRGAIDTAEEIKIAVTQEWDKFKASSEKAIEKTGEEIKKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREFDHDMKTLNQALKDLFKDNVN 166          
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Cyclobacterium qasimii TaxID=1350429 RepID=S7V8X8_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.540e-8
Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   55 LKQEWDKFKTVSETTIKNTEKEIKNLREKISKANXXXXXXXXXXXXXXEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEKTFEREFNHNMKELNNALKDLLMDNV 375
            +++ W KF+  SE  I NT+ +IKNLREKISK+    XXXXXXXXXXX                        +NE A E EK+FEREF H+M EL N+LKD+  DNV
Sbjct:   52 VEENWKKFEGESEVVIANTDTQIKNLREKISKSAKNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNEAAGEKEKSFEREFKHDMDELGNSLKDIFKDNV 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76835.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
hypothetical9.460e-2447.97protein n=1 Tax=Lacinutrix algicola TaxID=342954 R... [more]
Uncharacterized4.130e-2347.41protein n=2 Tax=Winogradskyella TaxID=286104 RepID... [more]
TolA-binding3.880e-2042.06protein n=1 Tax=Frigoriflavimonas asaccharolytica ... [more]
hypothetical5.080e-1447.79protein n=1 Tax=Winogradskyella ludwigii TaxID=268... [more]
hypothetical1.100e-1245.22protein n=1 Tax=Bizionia gelidisalsuginis TaxID=29... [more]
hypothetical1.680e-1153.33protein n=1 Tax=Winogradskyella helgolandensis Tax... [more]
Uncharacterized1.810e-1043.20protein n=1 Tax=Cellulophaga algicola (strain DSM ... [more]
Uncharacterized5.480e-1040.18protein n=2 Tax=Winogradskyella eximia TaxID=26200... [more]
Uncharacterized1.970e-948.41protein n=2 Tax=Winogradskyella TaxID=286104 RepID... [more]
Uncharacterized2.540e-847.66protein n=2 Tax=Cyclobacterium qasimii TaxID=13504... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76835contigH-canaliculatus_M_contigs76835:141..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog641526.ADIWIN_2504
Model size381
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.77e-24
EggNOG OGs2E83E@1|root,332HB@2|Bacteria,4NVH9@976|Bacteroidetes,1I91R@117743|Flavobacteriia
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.4529047-CDS-H-canaliculatus_M_contigs76835:140..5211696854106.4529047-CDS-H-canaliculatus_M_contigs76835:140..521Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76835 141..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76835.2.1prot_H-canaliculatus_M_contigs76835.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76835 141..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76835.2.1

>prot_H-canaliculatus_M_contigs76835.2.1 ID=prot_H-canaliculatus_M_contigs76835.2.1|Name=mRNA_H-canaliculatus_M_contigs76835.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=127bp
NEDLTRGAINTAEEIRIVLKQEWDKFKTVSETTIKNTEKEIKNLREKISK
ANKKEREKLTKKLDELEQRNIVLKDKLAVRSRKFKENKIEFNEKAKEDEK
TFEREFNHNMKELNNALKDLLMDNVD*
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mRNA from alignment at H-canaliculatus_M_contigs76835:141..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76835.2.1 ID=mRNA_H-canaliculatus_M_contigs76835.2.1|Name=mRNA_H-canaliculatus_M_contigs76835.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=381bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76835:141..521- (Hapterophycus canaliculatus Oshoro7m male)
AATGAAGATTTAACAAGAGGAGCTATTAATACAGCCGAAGAAATTAGAAT TGTCCTCAAACAAGAATGGGACAAGTTTAAAACAGTTTCAGAAACCACCA TTAAGAATACCGAAAAAGAGATAAAGAATTTACGTGAAAAAATTTCAAAA GCAAATAAAAAAGAGCGTGAGAAACTTACTAAGAAGCTAGATGAATTGGA GCAAAGAAATATCGTTTTAAAAGATAAATTAGCTGTGCGCTCCAGAAAAT TCAAAGAAAATAAGATTGAATTCAATGAAAAAGCAAAAGAAGATGAAAAA ACATTTGAACGCGAATTTAATCACAATATGAAAGAGTTGAACAATGCTTT AAAAGATTTACTTATGGATAATGTAGATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76835:141..521-

>mRNA_H-canaliculatus_M_contigs76835.2.1 ID=mRNA_H-canaliculatus_M_contigs76835.2.1|Name=mRNA_H-canaliculatus_M_contigs76835.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=381bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76835:141..521- (Hapterophycus canaliculatus Oshoro7m male)
AATGAAGATTTAACAAGAGGAGCTATTAATACAGCCGAAGAAATTAGAAT
TGTCCTCAAACAAGAATGGGACAAGTTTAAAACAGTTTCAGAAACCACCA
TTAAGAATACCGAAAAAGAGATAAAGAATTTACGTGAAAAAATTTCAAAA
GCAAATAAAAAAGAGCGTGAGAAACTTACTAAGAAGCTAGATGAATTGGA
GCAAAGAAATATCGTTTTAAAAGATAAATTAGCTGTGCGCTCCAGAAAAT
TCAAAGAAAATAAGATTGAATTCAATGAAAAAGCAAAAGAAGATGAAAAA
ACATTTGAACGCGAATTTAATCACAATATGAAAGAGTTGAACAATGCTTT
AAAAGATTTACTTATGGATAATGTAGATTGA
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