mRNA_H-canaliculatus_M_contigs76832.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76832.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76832.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: Acriflavine (resistance protein B (Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F858_9RHOB)

HSP 1 Score: 294 bits (753), Expect = 1.260e-90
Identity = 141/173 (81.50%), Postives = 156/173 (90.17%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQA+VYVLARGNLSL EKD LV+QAEDI+  HPGIDTAF+FAGNGGLNANTGGAQAP DTIGQIQLETIPWEDRPN+ + WFT+PF  Y +++EVKAEAFDGDTVI+EL V L  +PGIK+EILNLSRGPASGKPVHLRIKGDNWDDL+ AT+ ARQQFDATPGL LI
Sbjct:  677 VESEPEQAVVYVLARGNLSLDEKDVLVKQAEDIIGAHPGIDTAFAFAGNGGLNANTGGAQAPMDTIGQIQLETIPWEDRPNSREAWFTVPFTDYVISREVKAEAFDGDTVIEELTVQLKEIPGIKIEILNLSRGPASGKPVHLRIKGDNWDDLLAATTAARQQFDATPGLFLI 849          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: efflux (RND transporter permease subunit n=1 Tax=Cognatishimia activa TaxID=1715691 RepID=UPI001ADEDD67)

HSP 1 Score: 265 bits (677), Expect = 2.980e-79
Identity = 127/173 (73.41%), Postives = 144/173 (83.24%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPE AIVYV ARGNLSL++KD LV+QAE+IV  HPG++TAF+FAG GGLN NTGGAQ P DT+GQIQ ETIPWEDRP   +PWFTIPFI YTVNQ+VKA  FDGDT+IDELM  L  +PG +VEIL  SRGPAS KPVHLR+KGDNW+DL+ AT +AR QFDAT GL LI
Sbjct:  632 VESEPEMAIVYVKARGNLSLEQKDGLVKQAEEIVIAHPGVETAFAFAGEGGLNNNTGGAQPPGDTVGQIQFETIPWEDRPENQEPWFTIPFIDYTVNQQVKALEFDGDTIIDELMAELEQIPGAQVEILAASRGPASAKPVHLRLKGDNWEDLLAATRMARAQFDATDGLTLI 804          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: Toluene (efflux pump membrane transporter TtgE n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BCJ3_9RHOB)

HSP 1 Score: 264 bits (675), Expect = 7.420e-79
Identity = 122/173 (70.52%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQAIVYV ARGN+SL+EKD LV+QAE ++  HPGI+TAF+FAG GGLNANTGGAQAPKDT+GQIQLETIPWE RP+A + WFT+PF  Y V +EVK  AFDGDTV+ EL   L+ +PGIKV++LNL++GPASGKP+HLR++G+NWDDL+ +T LAR++FDATPGL L+
Sbjct:  674 VESEPEQAIVYVRARGNMSLEEKDALVKQAEAVILQHPGIETAFAFAGQGGLNANTGGAQAPKDTVGQIQLETIPWEKRPDAREAWFTLPFTDYVVTREVKDVAFDGDTVLAELTTQLSQIPGIKVDVLNLAQGPASGKPIHLRVRGNNWDDLLASTLLAREKFDATPGLILV 846          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: efflux (RND transporter permease subunit n=1 Tax=Sulfitobacter aestuariivivens TaxID=2766981 RepID=UPI00168A7313)

HSP 1 Score: 261 bits (666), Expect = 1.210e-77
Identity = 123/173 (71.10%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQAIVYVLARGNLSL+EKD L++QAEDIVR HPGI TAF+FAG GGL++NTGGAQAPKDT+GQIQLETIPWEDRPN +   FTIPFI + V ++V+  AFDGD V+ +L+  L  +PGI+ EILNLSRGPASGKPVHLR+K D+W+DL+ + S+AR+QF+ TPGL LI
Sbjct:  663 VESEPEQAIVYVLARGNLSLEEKDSLLQQAEDIVRAHPGIQTAFAFAGEGGLDSNTGGAQAPKDTVGQIQLETIPWEDRPNQSSVLFTIPFINFEVTRDVQDPAFDGDVVLADLLEQLEVIPGIRTEILNLSRGPASGKPVHLRLKSDSWEDLVASASMAREQFERTPGLTLI 835          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: Toluene (efflux pump membrane transporter TtgE n=1 Tax=Sulfitobacter pseudonitzschiae TaxID=1402135 RepID=A0A221JYM9_9RHOB)

HSP 1 Score: 258 bits (660), Expect = 8.490e-77
Identity = 123/173 (71.10%), Postives = 144/173 (83.24%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQAIVYV+ARGNL L EKDDLVRQAE I+  HPG+ TAF+FAG GGLNANTGGAQ+PKD IGQ+Q+ETIPWEDRP+  +P FTIP I YT  ++V+   FDGD VID+L   L  +PGI+VEILNL+ GPAS KPVHLR+KGDNW+DLITAT++AR +FD TPGL LI
Sbjct:  671 VESEPEQAIVYVMARGNLGLDEKDDLVRQAEQIILQHPGVATAFAFAGTGGLNANTGGAQSPKDAIGQVQIETIPWEDRPSHKEPVFTIPLINYTFTRDVQDPDFDGDVVIDDLTSQLGQIPGIRVEILNLAMGPASAKPVHLRLKGDNWEDLITATTIARTEFDQTPGLKLI 843          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: Acriflavine (resistance protein B n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A073IZ51_9RHOB)

HSP 1 Score: 258 bits (659), Expect = 1.180e-76
Identity = 122/173 (70.52%), Postives = 147/173 (84.97%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQAIVYV+ARGNLSL+EKD LV QAED+V  HPG+ TAF+FAG GGLNANTGGAQ+PKDTIGQIQ+ETIPWEDRP+  +P FTIP I YT+ ++V+  AFDG+ VID+LM  L  +PGI+VEILNL+ GPAS KPVHLR+KG+NWDDL+ + +LAR +F+ TPGL LI
Sbjct:  676 VESEPEQAIVYVMARGNLSLEEKDALVHQAEDVVLQHPGVATAFAFAGTGGLNANTGGAQSPKDTIGQIQIETIPWEDRPSHKEPVFTIPLINYTLTRDVQDPAFDGNAVIDDLMAELGQIPGIRVEILNLAMGPASAKPVHLRLKGNNWDDLVASAALARAEFERTPGLRLI 848          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: efflux (RND transporter permease subunit n=1 Tax=Shimia aestuarii TaxID=254406 RepID=UPI001FB338CF)

HSP 1 Score: 258 bits (658), Expect = 1.290e-76
Identity = 123/173 (71.10%), Postives = 144/173 (83.24%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQAIVYVLARGNLSL++KD L+ QAEDIV  HPG+DTAF+FAG GGLN NTGGAQAPKD IGQI LETIPWEDRP+  + WFT+P IGY V + VK  AFDG+TVIDEL V+L+ +PG K+EI   SRGPAS KPVHLR+ GD+W+ LI AT +AR++FDA+PGL LI
Sbjct:  632 VESEPEQAIVYVLARGNLSLEQKDHLMHQAEDIVLAHPGVDTAFAFAGEGGLNQNTGGAQAPKDAIGQINLETIPWEDRPDIDEAWFTVPLIGYEVTRHVKDPAFDGNTVIDELEVALSRIPGAKIEIFEASRGPASAKPVHLRLLGDDWETLIDATRVAREKFDASPGLTLI 804          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: efflux (RND transporter permease subunit n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI001679B97C)

HSP 1 Score: 258 bits (658), Expect = 1.550e-76
Identity = 123/173 (71.10%), Postives = 147/173 (84.97%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VE+EPEQAIVYVLARGN+SL EKD L+ QAE+IV  HPGI +AF+FAG GGLNANTGGAQ+P+DTIGQIQLETI WEDRP+AT+PWFTIPF  YTV +EVKAE FDG+T++DEL V LA +PGI+ E+  LS+GPAS KPVHLRI+GD+WDDL+ A + AR+QF+  PGL  I
Sbjct:  662 VETEPEQAIVYVLARGNMSLDEKDALMAQAEEIVLSHPGIKSAFAFAGAGGLNANTGGAQSPRDTIGQIQLETIAWEDRPDATEPWFTIPFTDYTVMREVKAENFDGNTILDELSVELAEIPGIRTEVFALSQGPASAKPVHLRIRGDDWDDLLQAAASAREQFNTLPGLTRI 834          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: efflux (RND transporter permease subunit n=1 Tax=Tateyamaria pelophila TaxID=328415 RepID=UPI001CBCB5B0)

HSP 1 Score: 257 bits (656), Expect = 2.910e-76
Identity = 120/173 (69.36%), Postives = 145/173 (83.82%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            V++EPE+AIVYVLARGNLSL EKD L+RQAE +V  HPGI + F+FAG+GGLNANTGGA +PKD +GQIQLETIPWEDRP++ +PWFTIP + YTV  +VKAE FDGDT++DEL  +LA +PGIK E+LNLSRGPASGKPVHLRIKGDN++ L+     AR +F+ATPGL  I
Sbjct:  662 VDTEPEEAIVYVLARGNLSLDEKDALLRQAEQVVIDHPGISSVFAFAGSGGLNANTGGASSPKDAVGQIQLETIPWEDRPDSNQPWFTIPIVNYTVMHKVKAETFDGDTIMDELTAALAQIPGIKTEVLNLSRGPASGKPVHLRIKGDNFEQLVDVAGQARSKFEATPGLIKI 834          
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Match: Efflux (RND transporter permease subunit (Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A7Y2URH2_9RHOB)

HSP 1 Score: 249 bits (637), Expect = 3.540e-75
Identity = 119/173 (68.79%), Postives = 145/173 (83.82%), Query Frame = 1
Query:    1 VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNGGLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEVKAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNWDDLITATSLARQQFDATPGLALI 519
            VESEPEQAIVYVLARGNLSL+EKD L+ +AE+IV  HPG+ TAF+FAG GGL++NTGGAQAPKD+IGQIQLETIPWEDRPN   P FT+PFIGYTV +  +  AFDGD ++ EL   L+ +PGI++EIL  +RGPASGKPVHLR+K D++ +L+ AT+L RQQF+ATPGL LI
Sbjct:  663 VESEPEQAIVYVLARGNLSLEEKDHLLERAEEIVLQHPGVQTAFAFAGEGGLDSNTGGAQAPKDSIGQIQLETIPWEDRPNKVTPIFTVPFIGYTVTRATQDPAFDGDVILAELTEQLSNIPGIRIEILAQARGPASGKPVHLRLKSDSFTNLLAATALTRQQFEATPGLTLI 835          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76832.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Acriflavine1.260e-9081.50resistance protein B (Fragment) n=1 Tax=Sulfitobac... [more]
efflux2.980e-7973.41RND transporter permease subunit n=1 Tax=Cognatish... [more]
Toluene7.420e-7970.52efflux pump membrane transporter TtgE n=1 Tax=Asci... [more]
efflux1.210e-7771.10RND transporter permease subunit n=1 Tax=Sulfitoba... [more]
Toluene8.490e-7771.10efflux pump membrane transporter TtgE n=1 Tax=Sulf... [more]
Acriflavine1.180e-7670.52resistance protein B n=5 Tax=Roseobacteraceae TaxI... [more]
efflux1.290e-7671.10RND transporter permease subunit n=1 Tax=Shimia ae... [more]
efflux1.550e-7671.10RND transporter permease subunit n=1 Tax=Tateyamar... [more]
efflux2.910e-7669.36RND transporter permease subunit n=1 Tax=Tateyamar... [more]
Efflux3.540e-7568.79RND transporter permease subunit (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76832contigH-canaliculatus_M_contigs76832:1..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1402135.SUH3_19160
Preferred namettgE
PFAMsACR_tran
Model size519
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K18989
KEGG TC2.A.6.2.30
KEGG ModuleM00720
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-77
EggNOG OGsCOG0841@1|root,COG0841@2|Bacteria,1MU48@1224|Proteobacteria,2TQT0@28211|Alphaproteobacteria,3ZV47@60136|Sulfitobacter
DescriptionAcrB/AcrD/AcrF family
Cds size519
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.4193783-CDS-H-canaliculatus_M_contigs76832:0..5191696854106.4193783-CDS-H-canaliculatus_M_contigs76832:0..519Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76832 1..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76832.1.1prot_H-canaliculatus_M_contigs76832.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76832 1..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76832.1.1

>prot_H-canaliculatus_M_contigs76832.1.1 ID=prot_H-canaliculatus_M_contigs76832.1.1|Name=mRNA_H-canaliculatus_M_contigs76832.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
VESEPEQAIVYVLARGNLSLQEKDDLVRQAEDIVRLHPGIDTAFSFAGNG
GLNANTGGAQAPKDTIGQIQLETIPWEDRPNATKPWFTIPFIGYTVNQEV
KAEAFDGDTVIDELMVSLATLPGIKVEILNLSRGPASGKPVHLRIKGDNW
DDLITATSLARQQFDATPGLALI
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mRNA from alignment at H-canaliculatus_M_contigs76832:1..519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76832.1.1 ID=mRNA_H-canaliculatus_M_contigs76832.1.1|Name=mRNA_H-canaliculatus_M_contigs76832.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76832:1..519- (Hapterophycus canaliculatus Oshoro7m male)
GTAGAATCCGAACCTGAACAGGCCATCGTTTACGTCCTTGCGCGGGGCAA TCTGTCATTGCAAGAAAAGGATGATCTGGTCCGTCAGGCAGAAGACATCG TACGCCTGCACCCTGGCATCGACACCGCATTTTCCTTTGCGGGCAACGGT GGCTTGAACGCCAACACAGGCGGCGCGCAGGCCCCAAAAGACACCATTGG CCAGATCCAGTTGGAAACGATTCCGTGGGAAGATCGCCCGAACGCGACCA AGCCATGGTTCACCATTCCGTTCATCGGCTACACCGTCAACCAAGAGGTT AAGGCCGAGGCATTTGACGGCGACACGGTCATCGACGAACTGATGGTATC GCTCGCGACGTTGCCCGGTATCAAGGTCGAAATCCTCAATCTGTCGCGCG GTCCTGCCAGCGGCAAACCCGTGCATTTGCGGATCAAAGGCGACAATTGG GACGACCTGATAACGGCGACATCACTGGCGCGCCAACAGTTCGACGCGAC CCCCGGCTTGGCCCTGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76832:1..519-

>mRNA_H-canaliculatus_M_contigs76832.1.1 ID=mRNA_H-canaliculatus_M_contigs76832.1.1|Name=mRNA_H-canaliculatus_M_contigs76832.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76832:1..519- (Hapterophycus canaliculatus Oshoro7m male)
GTAGAATCCGAACCTGAACAGGCCATCGTTTACGTCCTTGCGCGGGGCAA
TCTGTCATTGCAAGAAAAGGATGATCTGGTCCGTCAGGCAGAAGACATCG
TACGCCTGCACCCTGGCATCGACACCGCATTTTCCTTTGCGGGCAACGGT
GGCTTGAACGCCAACACAGGCGGCGCGCAGGCCCCAAAAGACACCATTGG
CCAGATCCAGTTGGAAACGATTCCGTGGGAAGATCGCCCGAACGCGACCA
AGCCATGGTTCACCATTCCGTTCATCGGCTACACCGTCAACCAAGAGGTT
AAGGCCGAGGCATTTGACGGCGACACGGTCATCGACGAACTGATGGTATC
GCTCGCGACGTTGCCCGGTATCAAGGTCGAAATCCTCAATCTGTCGCGCG
GTCCTGCCAGCGGCAAACCCGTGCATTTGCGGATCAAAGGCGACAATTGG
GACGACCTGATAACGGCGACATCACTGGCGCGCCAACAGTTCGACGCGAC
CCCCGGCTTGGCCCTGATC
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