mRNA_H-canaliculatus_M_contigs76831.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76831.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76831.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AWG8_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 8.360e-21
Identity = 149/166 (89.76%), Postives = 154/166 (92.77%), Query Frame = 1
Query:    1 RFRTKTVYKTVPVVEENYRTKMVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPVVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYSTG---GCGS 489
            R+RTKTVYKTVP+VEENYRTKMVNV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     EKTR VTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQ+VEVAAAP ATNV+YS+G   GCGS
Sbjct:  123 RYRTKTVYKTVPIVEENYRTKMVNVPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEKTRTVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQIVEVAAAPVATNVAYSSGTGCGCGS 288          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Putative (membrane protein YgcG n=6 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5DZ24_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-15
Identity = 48/68 (70.59%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  289 YPVVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYSTGGCGSS 492
            YPV T+KTR V NAVPVTXXXX          KTVTKDYGHWEEQV+EV AAP ATNV YS+G CGSS
Sbjct:  214 YPVTTQKTRTVVNAVPVTXXXXIQIDVPTTEMKTVTKDYGHWEEQVIEVPAAPVATNVVYSSG-CGSS 280          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: 4Fe-4S (ferredoxin-type domain-containing protein n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CMA8_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 1.970e-15
Identity = 130/163 (79.75%), Postives = 136/163 (83.44%), Query Frame = 1
Query:    1 RFRTKTVYKTVPVVEENYRTKMVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPVVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYSTGGCGS 489
            R+RTKTVY TVPV E  YR+K+VN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPV  +K R V NAVPVT              +TVTKDYGH+EEQVVEVAAAPAA NVSY  GGCGS
Sbjct:  109 RYRTKTVYNTVPVTETKYRSKVVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPVTEQKVRTVVNAVPVTKQRTIQVCVPQTTMQTVTKDYGHFEEQVVEVAAAPAAMNVSYG-GGCGS 270          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: ferredoxin (n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E349793)

HSP 1 Score: 69.7 bits (169), Expect = 9.400e-11
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  295 VVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYSTG 477
            V T+KTR V NAV   XXXXXXXXXXXXXX TVTKDYGHWEEQVVEVAAAP ATNV+YS+G
Sbjct:  223 VTTQKTRTVVNAVXXXXXXXXXXXXXXXXXXTVTKDYGHWEEQVVEVAAAPVATNVAYSSG 283          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Uncharacterized (protein n=12 Tax=Rhodopirellula TaxID=265488 RepID=Q7URA2_RHOBA)

HSP 1 Score: 67.4 bits (163), Expect = 5.970e-10
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  295 VVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYSTGGCGS 489
            V T+KTR V NAV   XXXXXXXXXXXX  +TVTKDYGHWEEQVVEVA+AP A+ V+Y  GGCGS
Sbjct:  238 VTTQKTRTVVNAVXXXXXXXXXXXXXXXTMQTVTKDYGHWEEQVVEVASAPVASTVAY-VGGCGS 301          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CFZ9_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.270e-8
Identity = 122/170 (71.76%), Postives = 130/170 (76.47%), Query Frame = 1
Query:    1 RFRTKTVYKTVPVVEENYRTKMVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPVVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYST-------GGCGS 489
            R RTKTVYKTVPV EE YRTK+VN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ V  ++   V NAVPV+              + VTKDYGHWEEQVV VA+ PAA+   Y         GGCGS
Sbjct:  110 RQRTKTVYKTVPVTEERYRTKVVNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAVTEQRMHTVVNAVPVSKTRTIEVCVPKTTMQMVTKDYGHWEEQVVAVASGPAASGNGYXXXXXXXMMGGCGS 279          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6A566_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 5.920e-8
Identity = 36/68 (52.94%), Postives = 41/68 (60.29%), Query Frame = 1
Query:  295 VVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATN-VSYST---GGCG 486
            V  +K R VTNAVPVT              +TVTKDYGHWEEQVVEVA+  A T  V+Y+    GGCG
Sbjct:  220 VTEQKFRTVTNAVPVTKTRMIEVCVPTTTMQTVTKDYGHWEEQVVEVASPVATTTTVNYAATYAGGCG 287          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Ferredoxin (n=1 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 RepID=M5RGX9_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.700e-7
Identity = 109/169 (64.50%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    1 RFRTKTVYKTVPVVEENYRTKMVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPVVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAA--TNVSYSTG---GCGSS 492
            R RTKTVYKTVPV EE YRTK+VN XXX              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          V NAVPV+              KTVTKDYGHWEEQVV   +APA   +  SY  G   GCGSS
Sbjct:  113 RHRTKTVYKTVPVTEERYRTKVVNKXXXETKTVEYSVLVPEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVNAVPVSKTRTIEYCVPTTTMKTVTKDYGHWEEQVVAATSAPAGCGSGSSYGNGMMGGCGSS 281          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NVB3_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.720e-6
Identity = 112/161 (69.57%), Postives = 127/161 (78.88%), Query Frame = 1
Query:    1 RFRTKTVYKTVPVVEENYRTKMVNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPVVTEKTRAVTNAVPVTXXXXXXXXXXXXXXKTVTKDYGHWEEQVVEVAAAPAATNVSYSTGGC 483
            R+RTKT Y++VP+ E  YR+K++ VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  + V  ++  +VTNAVPVT              +TVTKD+GHWE++VVEV AA     VSY  GGC
Sbjct:  138 RYRTKTTYRSVPITETKYRSKVIQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPHAVSEQRMHSVTNAVPVTKTRTVQVCVPTTKMQTVTKDFGHWEDRVVEVPAAAPVQAVSY--GGC 296          
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Match: 4Fe-4S (ferredoxin-type domain-containing protein n=1 Tax=Rubripirellula amarantea TaxID=2527999 RepID=A0A5C5WU44_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.240e-6
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  385 KTVTKDYGHWEEQVVEVAAAPAAT-------NVSYSTGGCGSS 492
            +TVTKDYGHWEEQVVEVAA+P+ +       NVSY +G CGSS
Sbjct:  253 QTVTKDYGHWEEQVVEVAASPSYSYAPATYSNVSYGSGSCGSS 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76831.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Uncharacterized8.360e-2189.76protein n=1 Tax=Rhodopirellula pilleata TaxID=2714... [more]
Putative1.070e-1570.59membrane protein YgcG n=6 Tax=Rhodopirellula TaxID... [more]
4Fe-4S1.970e-1579.75ferredoxin-type domain-containing protein n=1 Tax=... [more]
ferredoxin9.400e-1181.97n=2 Tax=unclassified Rhodopirellula TaxID=2624920 ... [more]
Uncharacterized5.970e-1073.85protein n=12 Tax=Rhodopirellula TaxID=265488 RepID... [more]
Uncharacterized1.270e-871.76protein n=1 Tax=Novipirellula galeiformis TaxID=25... [more]
Uncharacterized5.920e-852.94protein n=1 Tax=Stieleria varia TaxID=2528005 RepI... [more]
Ferredoxin2.700e-764.50n=1 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 ... [more]
Uncharacterized1.720e-669.57protein n=1 Tax=Planctomycetes bacterium K23_9 Tax... [more]
4Fe-4S4.240e-665.12ferredoxin-type domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76831contigH-canaliculatus_M_contigs76831:2..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.3877726-CDS-H-canaliculatus_M_contigs76831:1..5201696854106.3877726-CDS-H-canaliculatus_M_contigs76831:1..520Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76831 2..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76831.1.1prot_H-canaliculatus_M_contigs76831.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76831 2..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76831.1.1

>prot_H-canaliculatus_M_contigs76831.1.1 ID=prot_H-canaliculatus_M_contigs76831.1.1|Name=mRNA_H-canaliculatus_M_contigs76831.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
RFRTKTVYKTVPVVEENYRTKMVNVPKTETKTVTYSVLVPVKSERTVEVT
ETVPQWSEVPETYTVRVPTLVDVPEEYTVKVPQLRDESFTYTVSVPYPVV
TEKTRAVTNAVPVTKTRTINVCVPKTEMKTVTKDYGHWEEQVVEVAAAPA
ATNVSYSTGGCGSSASYSSGGCG
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mRNA from alignment at H-canaliculatus_M_contigs76831:2..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76831.1.1 ID=mRNA_H-canaliculatus_M_contigs76831.1.1|Name=mRNA_H-canaliculatus_M_contigs76831.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76831:2..520- (Hapterophycus canaliculatus Oshoro7m male)
CGTTTCCGTACCAAGACTGTTTACAAGACCGTGCCGGTTGTCGAAGAAAA CTACCGCACCAAGATGGTCAACGTTCCTAAGACCGAAACGAAGACCGTTA CTTACTCGGTTCTTGTTCCTGTGAAGAGCGAACGAACCGTTGAAGTCACC GAAACCGTGCCACAATGGTCGGAAGTTCCTGAAACTTACACCGTTCGCGT TCCGACCTTGGTCGATGTTCCGGAAGAATACACCGTCAAGGTGCCACAAC TTCGTGACGAAAGCTTCACCTACACCGTAAGCGTTCCTTACCCAGTCGTC ACAGAAAAGACACGTGCGGTCACCAACGCTGTGCCAGTTACTAAGACTCG CACGATCAATGTTTGCGTGCCAAAGACTGAAATGAAGACCGTCACCAAGG ACTACGGTCATTGGGAAGAACAAGTTGTTGAAGTTGCTGCCGCGCCGGCC GCGACCAACGTATCGTACAGCACTGGTGGCTGCGGAAGCTCAGCTTCTTA CAGCTCGGGTGGATGTGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76831:2..520-

>mRNA_H-canaliculatus_M_contigs76831.1.1 ID=mRNA_H-canaliculatus_M_contigs76831.1.1|Name=mRNA_H-canaliculatus_M_contigs76831.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76831:2..520- (Hapterophycus canaliculatus Oshoro7m male)
CGTTTCCGTACCAAGACTGTTTACAAGACCGTGCCGGTTGTCGAAGAAAA
CTACCGCACCAAGATGGTCAACGTTCCTAAGACCGAAACGAAGACCGTTA
CTTACTCGGTTCTTGTTCCTGTGAAGAGCGAACGAACCGTTGAAGTCACC
GAAACCGTGCCACAATGGTCGGAAGTTCCTGAAACTTACACCGTTCGCGT
TCCGACCTTGGTCGATGTTCCGGAAGAATACACCGTCAAGGTGCCACAAC
TTCGTGACGAAAGCTTCACCTACACCGTAAGCGTTCCTTACCCAGTCGTC
ACAGAAAAGACACGTGCGGTCACCAACGCTGTGCCAGTTACTAAGACTCG
CACGATCAATGTTTGCGTGCCAAAGACTGAAATGAAGACCGTCACCAAGG
ACTACGGTCATTGGGAAGAACAAGTTGTTGAAGTTGCTGCCGCGCCGGCC
GCGACCAACGTATCGTACAGCACTGGTGGCTGCGGAAGCTCAGCTTCTTA
CAGCTCGGGTGGATGTGGT
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