mRNA_H-canaliculatus_M_contigs76812.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76812.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76812.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76812.1.1 vs.
Match: Mitochondrial (import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.820e-20
Identity = 127/179 (70.95%), Postives = 138/179 (77.09%), Query Frame = 1 
Query:    1 PKKGPAAIKARGAIPVTKVAAKHAGAGGTSGXXXXXXXXXXXXXXXXXXXXXXXXXG---------FTKSEMLAARKARKANASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKWGWGAKFLAGTSVGVAALGIAWQLKPDEVRRLLDDSPVDHFAI 510
            PKKGPAAIKARGA+PV+K   + +  G T G      XXXXXXXXXXXXXXXXXXX          FTKSEMLAARKARKA+ +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        WGWG K +AGTSVG+AALGIAWQLKPDE+R+LLDDSP+DHF I
Sbjct:   41 PKKGPAAIKARGAMPVSKAGKQGSKTGKTGGAAAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARKASVTAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------WGWGTKLVAGTSVGLAALGIAWQLKPDEMRKLLDDSPIDHFFI 211
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BLAST of mRNA_H-canaliculatus_M_contigs76812.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLZ0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.850e-20
Identity = 126/179 (70.39%), Postives = 136/179 (75.98%), Query Frame = 1 
Query:    1 PKKGPAAIKARGAIPVTKVAAKHAGAGGTSGXXXXXXXXXXXXXXXXXXXXXXXXXG---------FTKSEMLAARKARKANASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGKWGWGAKFLAGTSVGVAALGIAWQLKPDEVRRLLDDSPVDHFAI 510
            PKKGPAAIKARGA+ V+K   + +  G + G X    XXXXXXXXXXXXXXXXXXX          FTKSEMLAARKAR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          QGKWGWG + LAGTSVG+AA GIAWQLKPDE+R+LLDDSP+DHF I
Sbjct:   41 PKKGPAAIKARGAMSVSKAGKQGSNTGKSGGAXAREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTKSEMLAARKARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKG--------QGKWGWGTRLLAGTSVGLAAFGIAWQLKPDEMRKLLDDSPIDHFFI 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76812.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Mitochondrial1.820e-2070.95import inner membrane translocase subunit TIM50 n=... [more]
Uncharacterized4.850e-2070.39protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76812contigH-canaliculatus_M_contigs76812:3..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBI3
Preferred nameTIMM50
PFAMsNIF
Model size510
Max annot lvl2759|Eukaryota
KEGG koko:K17496
KEGG TC3.A.8.1
Hectar predicted targeting categoryother localisation
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
Exons1
Evalue2.99e-21
EggNOG OGsCOG5190@1|root,KOG2832@2759|Eukaryota
Ec32 ortholog descriptionTim50 homolog, mitochondrial inner membrane protein of TIM23 complex
Ec32 orthologEc-27_003880.1
Descriptionprotein import into mitochondrial matrix
Cds size510
COG categoryK
BRITEko00000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.2968066-CDS-H-canaliculatus_M_contigs76812:2..5121696854106.2968066-CDS-H-canaliculatus_M_contigs76812:2..512Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76812 3..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76812.1.1prot_H-canaliculatus_M_contigs76812.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76812 3..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76812.1.1

>prot_H-canaliculatus_M_contigs76812.1.1 ID=prot_H-canaliculatus_M_contigs76812.1.1|Name=mRNA_H-canaliculatus_M_contigs76812.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
PKKGPAAIKARGAIPVTKVAAKHAGAGGTSGGAKAASATAAAGKAAGSAG
GGSSGGGFTKSEMLAARKARKANASAKTAAAAAAAAKAAEAALPAAGAAE
SGAAASREGASAAAAAAGGAGARGQGKWGWGAKFLAGTSVGVAALGIAWQ
LKPDEVRRLLDDSPVDHFAI
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mRNA from alignment at H-canaliculatus_M_contigs76812:3..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76812.1.1 ID=mRNA_H-canaliculatus_M_contigs76812.1.1|Name=mRNA_H-canaliculatus_M_contigs76812.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76812:3..512- (Hapterophycus canaliculatus Oshoro7m male)
CCGAAGAAGGGCCCGGCGGCGATAAAGGCTAGAGGGGCGATACCGGTCAC
GAAGGTTGCGGCTAAGCATGCTGGCGCCGGGGGGACTAGTGGCGGCGCGA
AAGCAGCGTCGGCGACAGCCGCCGCGGGAAAGGCAGCCGGCAGCGCCGGC
GGGGGCAGCAGCGGTGGGGGTTTCACCAAGAGCGAGATGCTCGCCGCGAG
GAAGGCCAGGAAGGCGAACGCTTCCGCCAAGACGGCGGCTGCTGCCGCCG
CCGCGGCGAAAGCTGCCGAAGCGGCCCTGCCGGCTGCGGGTGCTGCCGAG
TCGGGAGCGGCGGCGAGCCGCGAGGGTGCCTCGGCAGCGGCAGCGGCAGC
GGGCGGCGCAGGGGCGAGAGGGCAAGGGAAGTGGGGGTGGGGGGCAAAGT
TCCTGGCGGGGACTTCGGTGGGGGTGGCGGCATTGGGGATTGCGTGGCAG
CTCAAGCCAGACGAAGTGAGGAGGCTCTTGGATGATAGTCCCGTCGACCA
CTTCGCGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76812:3..512-

>mRNA_H-canaliculatus_M_contigs76812.1.1 ID=mRNA_H-canaliculatus_M_contigs76812.1.1|Name=mRNA_H-canaliculatus_M_contigs76812.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76812:3..512- (Hapterophycus canaliculatus Oshoro7m male)
CCGAAGAAGGGCCCGGCGGCGATAAAGGCTAGAGGGGCGATACCGGTCAC
GAAGGTTGCGGCTAAGCATGCTGGCGCCGGGGGGACTAGTGGCGGCGCGA
AAGCAGCGTCGGCGACAGCCGCCGCGGGAAAGGCAGCCGGCAGCGCCGGC
GGGGGCAGCAGCGGTGGGGGTTTCACCAAGAGCGAGATGCTCGCCGCGAG
GAAGGCCAGGAAGGCGAACGCTTCCGCCAAGACGGCGGCTGCTGCCGCCG
CCGCGGCGAAAGCTGCCGAAGCGGCCCTGCCGGCTGCGGGTGCTGCCGAG
TCGGGAGCGGCGGCGAGCCGCGAGGGTGCCTCGGCAGCGGCAGCGGCAGC
GGGCGGCGCAGGGGCGAGAGGGCAAGGGAAGTGGGGGTGGGGGGCAAAGT
TCCTGGCGGGGACTTCGGTGGGGGTGGCGGCATTGGGGATTGCGTGGCAG
CTCAAGCCAGACGAAGTGAGGAGGCTCTTGGATGATAGTCCCGTCGACCA
CTTCGCGATC
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