mRNA_H-canaliculatus_M_contigs76760.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76760.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76760.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U383_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 5.560e-12
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MAL+YAEKQAVVAEVA+VAGSALSAVAAEYRGLSVSQLT
Sbjct:    1 MALTYAEKQAVVAEVANVAGSALSAVAAEYRGLSVSQLT 39
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BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=1 Tax=Granulosicoccus antarcticus IMCC3135 TaxID=1192854 RepID=A0A2Z2NQ31_9GAMM)

HSP 1 Score: 64.7 bits (156), Expect = 7.830e-12
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MAL+YAEKQAVVAEVADVA SALSAVAAEYRGLSVSQLT
Sbjct:    1 MALTYAEKQAVVAEVADVANSALSAVAAEYRGLSVSQLT 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6ED89_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 1.240e-10
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MAL+YAEKQ VV+EVA+VAGSALSAVAAEYRGLSVSQ+T
Sbjct:    1 MALTYAEKQQVVSEVAEVAGSALSAVAAEYRGLSVSQMT 39
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BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7C6RYI1_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.560e-7
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            M+L+ AEKQAVVAEVA VA SA SA+AAEYRGLSV+QLT
Sbjct:    1 MSLNLAEKQAVVAEVAKVAASAHSAIAAEYRGLSVAQLT 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A349EF51_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.580e-7
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            M+L+ AEKQAVVAEVA VA SA SA+AAEYRGLSV+QLT
Sbjct:    1 MSLNLAEKQAVVAEVAKVAASAHSAIAAEYRGLSVTQLT 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=9 Tax=Chromatiaceae TaxID=1046 RepID=D3RN01_ALLVD)

HSP 1 Score: 53.1 bits (126), Expect = 2.130e-7
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MAL++A+K+A+VAEVA+VA SA SA+AAEYRGL+V QLT
Sbjct:    1 MALNFAQKEAIVAEVAEVAKSAYSAIAAEYRGLTVEQLT 39
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BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=1 Tax=Wenzhouxiangella sp. W260 TaxID=2613842 RepID=A0A5N0T373_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 2.130e-7
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MAL++ +K+AVVAEVA+ AGSALSAVAAEYRGL+V ++T
Sbjct:    1 MALNFEQKKAVVAEVAEAAGSALSAVAAEYRGLTVEEMT 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=1 Tax=Thiohalocapsa marina TaxID=424902 RepID=A0A5M8FJZ9_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 2.990e-7
Identity = 27/39 (69.23%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MAL++AEK+A+VAEVADVA SA SA+ AEYRGL+V+++T
Sbjct:    1 MALTFAEKEAIVAEVADVAKSAYSAIGAEYRGLTVAEMT 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=3 Tax=Candidatus Competibacteraceae TaxID=1400857 RepID=W6M2B3_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 3.060e-7
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            M+L+ AEKQAVVAEVA VA SA SA+AAEYRGLSV+Q+T
Sbjct:    1 MSLNLAEKQAVVAEVAKVAASAHSAIAAEYRGLSVAQIT 39
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Match: 50S (ribosomal protein L10 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TNR6_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 4.180e-7
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT 117
            MALS+AEKQA+VAEVADVA SA SAV AEY GLS +++T
Sbjct:    1 MALSFAEKQAIVAEVADVAKSAYSAVTAEYLGLSANEMT 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76760.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
50S5.560e-1294.87ribosomal protein L10 n=1 Tax=Granulosicoccus sp. ... [more]
50S7.830e-1294.87ribosomal protein L10 n=1 Tax=Granulosicoccus anta... [more]
50S1.240e-1087.18ribosomal protein L10 n=1 Tax=Gammaproteobacteria ... [more]
50S1.560e-779.49ribosomal protein L10 n=3 Tax=Gammaproteobacteria ... [more]
50S1.580e-779.49ribosomal protein L10 n=3 Tax=Gammaproteobacteria ... [more]
50S2.130e-771.79ribosomal protein L10 n=9 Tax=Chromatiaceae TaxID=... [more]
50S2.130e-771.79ribosomal protein L10 n=1 Tax=Wenzhouxiangella sp.... [more]
50S2.990e-769.23ribosomal protein L10 n=1 Tax=Thiohalocapsa marina... [more]
50S3.060e-776.92ribosomal protein L10 n=3 Tax=Candidatus Competiba... [more]
50S4.180e-774.36ribosomal protein L10 n=1 Tax=Gammaproteobacteria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76760contigH-canaliculatus_M_contigs76760:1..117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog572477.Alvin_2372
Preferred namerplJ
PFAMsRibosomal_L10
Model size117
Max annot lvl135613|Chromatiales
KEGG koko:K02864
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.49e-08
EggNOG OGsCOG0244@1|root,COG0244@2|Bacteria,1RAN5@1224|Proteobacteria,1S286@1236|Gammaproteobacteria,1WXDE@135613|Chromatiales
DescriptionForms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
Cds size117
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.065582-CDS-H-canaliculatus_M_contigs76760:0..1171696854106.065582-CDS-H-canaliculatus_M_contigs76760:0..117Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76760 1..117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76760.1.1prot_H-canaliculatus_M_contigs76760.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76760 1..117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76760.1.1

>prot_H-canaliculatus_M_contigs76760.1.1 ID=prot_H-canaliculatus_M_contigs76760.1.1|Name=mRNA_H-canaliculatus_M_contigs76760.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=39bp
MALSYAEKQAVVAEVADVAGSALSAVAAEYRGLSVSQLT
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mRNA from alignment at H-canaliculatus_M_contigs76760:1..117-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76760.1.1 ID=mRNA_H-canaliculatus_M_contigs76760.1.1|Name=mRNA_H-canaliculatus_M_contigs76760.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76760:1..117- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCTGAGTTATGCAGAGAAGCAAGCAGTCGTCGCTGAGGTCGCAGA
TGTTGCGGGATCGGCTTTGTCTGCTGTTGCTGCCGAGTATCGGGGACTAA
GCGTCTCGCAGTTGACC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76760:1..117-

>mRNA_H-canaliculatus_M_contigs76760.1.1 ID=mRNA_H-canaliculatus_M_contigs76760.1.1|Name=mRNA_H-canaliculatus_M_contigs76760.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76760:1..117- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCTGAGTTATGCAGAGAAGCAAGCAGTCGTCGCTGAGGTCGCAGA
TGTTGCGGGATCGGCTTTGTCTGCTGTTGCTGCCGAGTATCGGGGACTAA
GCGTCTCGCAGTTGACC
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