mRNA_H-canaliculatus_M_contigs7673.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7673.3.1
Unique NamemRNA_H-canaliculatus_M_contigs7673.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7673.3.1 vs.
Match: Mannose-6-phosphate (isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK22_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.270e-23
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QIPASQGGIFFLPANTHCTMLSGKTSDLKVAMAHTNLNWGSLTPRGGTGAPNF 159
            +IPA++GGIFFLPANT+CTM+SGK SDL++AMAHTNLNWG +TPRG TGAPNF
Sbjct:   98 EIPAAEGGIFFLPANTYCTMVSGKKSDLRIAMAHTNLNWGPVTPRG-TGAPNF 149
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BLAST of mRNA_H-canaliculatus_M_contigs7673.3.1 vs.
Match: Mannose-6-phosphate (isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB30_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.850e-21
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 QIPASQGGIFFLPANTHCTMLSGKTSDLKVAMAHTNLNWGSLTPRGGTGAPNF 159
            +IPA++GGIFFLPANT+CTM+SGKTSDL++AMAHTNLNWG +TP G TGAPNF
Sbjct:  432 EIPAAEGGIFFLPANTYCTMVSGKTSDLRIAMAHTNLNWGPMTPSG-TGAPNF 483
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BLAST of mRNA_H-canaliculatus_M_contigs7673.3.1 vs.
Match: Mannose-6-phosphate (isomerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0R5QMD0_SACJA)

HSP 1 Score: 85.1 bits (209), Expect = 5.050e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 QIPASQGGIFFLPANTHCTMLSGKTSDLKVAMAHTNLNWGSLTPRGGTGAPNF 159
            +I A+ GGIFFLPANTHCT++SGK S+L +AMAHTNLNWG +TPRG + APNF
Sbjct:  429 EIEAAAGGIFFLPANTHCTLVSGKLSELHIAMAHTNLNWGPMTPRG-SAAPNF 480
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BLAST of mRNA_H-canaliculatus_M_contigs7673.3.1 vs.
Match: Mannose-6-phosphate (isomerase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A0R5QMD6_SACJA)

HSP 1 Score: 52.0 bits (123), Expect = 2.540e-6
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 QIPASQGGIFFLPANTHCTMLSGKTSD-LKVAMAHTNLNWGSL---TP-----RGGTGAPNF 159
            +I A +GG+FFLPA T   + SG   D +K+A+AHTNL+WG+L   TP     RG   AP F
Sbjct:  564 EIKACEGGVFFLPAYTPVVVCSGTKGDGIKMALAHTNLHWGTLAAPTPNSPRRRGSARAPAF 625
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7673.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Mannose-6-phosphate2.270e-2379.25isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
Mannose-6-phosphate1.850e-2179.25isomerase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Mannose-6-phosphate5.050e-1871.70isomerase n=1 Tax=Saccharina japonica TaxID=88149 ... [more]
Mannose-6-phosphate2.540e-648.39isomerase n=2 Tax=Saccharina japonica TaxID=88149 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7673contigH-canaliculatus_M_contigs7673:4611..4772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LB30
Preferred nameMPI
PFAMsPMI_typeI
Model size162
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00376,RC00523
KEGG koko:K01809,ko:K01886
KEGG ReactionR01819,R03652
KEGG Pathwayko00051,ko00520,ko00970,ko01100,ko01110,ko01130,map00051,map00520,map00970,map01100,map01110,map01130
KEGG ModuleM00114,M00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000032,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004476,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006002,GO:0006013,GO:0006056,GO:0006057,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006464,GO:0006486,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009110,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009225,GO:0009226,GO:0009259,GO:0009260,GO:0009298,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009642,GO:0009646,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010154,GO:0014070,GO:0016043,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017085,GO:0017144,GO:0018130,GO:0019309,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019673,GO:0019693,GO:0019752,GO:0019852,GO:0019853,GO:0022414,GO:0031505,GO:0031506,GO:0031667,GO:0032025,GO:0032501,GO:0032502,GO:0032787,GO:0033273,GO:0033591,GO:0034284,GO:0034285,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0036211,GO:0042221,GO:0042364,GO:0042493,GO:0042546,GO:0042866,GO:0043170,GO:0043412,GO:0043413,GO:0043436,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046680,GO:0046686,GO:0046700,GO:0046939,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0061458,GO:0061611,GO:0061615,GO:0061619,GO:0070085,GO:0070589,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700
Exons1
Evalue3.03e-22
EggNOG OGsCOG1482@1|root,KOG2757@2759|Eukaryota
EC5.3.1.8,6.1.1.18
Descriptionmannose-6-phosphate isomerase activity
Cds size162
COG categoryG
BiGG ReactioniRC1080.CRv4_Au5_s2_g9754_t1
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.8911161-CDS-H-canaliculatus_M_contigs7673:4610..47721696854105.8911161-CDS-H-canaliculatus_M_contigs7673:4610..4772Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7673 4611..4772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7673.3.1prot_H-canaliculatus_M_contigs7673.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7673 4611..4772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7673.3.1

>prot_H-canaliculatus_M_contigs7673.3.1 ID=prot_H-canaliculatus_M_contigs7673.3.1|Name=mRNA_H-canaliculatus_M_contigs7673.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=54bp
QIPASQGGIFFLPANTHCTMLSGKTSDLKVAMAHTNLNWGSLTPRGGTGA
PNF*
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mRNA from alignment at H-canaliculatus_M_contigs7673:4611..4772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7673.3.1 ID=mRNA_H-canaliculatus_M_contigs7673.3.1|Name=mRNA_H-canaliculatus_M_contigs7673.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7673:4611..4772- (Hapterophycus canaliculatus Oshoro7m male)
CAGATTCCAGCATCTCAGGGAGGCATTTTCTTCCTCCCGGCCAACACGCA
TTGCACGATGCTTTCGGGGAAGACCTCGGACCTCAAAGTCGCCATGGCGC
ACACCAACCTCAACTGGGGTTCGCTGACACCCAGGGGCGGCACCGGCGCT
CCCAACTTCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7673:4611..4772-

>mRNA_H-canaliculatus_M_contigs7673.3.1 ID=mRNA_H-canaliculatus_M_contigs7673.3.1|Name=mRNA_H-canaliculatus_M_contigs7673.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7673:4611..4772- (Hapterophycus canaliculatus Oshoro7m male)
CAGATTCCAGCATCTCAGGGAGGCATTTTCTTCCTCCCGGCCAACACGCA
TTGCACGATGCTTTCGGGGAAGACCTCGGACCTCAAAGTCGCCATGGCGC
ACACCAACCTCAACTGGGGTTCGCTGACACCCAGGGGCGGCACCGGCGCT
CCCAACTTCTAA
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