mRNA_H-canaliculatus_M_contigs76727.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76727.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76727.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 9.760e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQV 117
            VQELQ AG +VAMVGDGVNDAPALATADVGIAVGAGTQV
Sbjct: 1156 VQELQLAGGHVAMVGDGVNDAPALATADVGIAVGAGTQV 1194
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Heavy (metal translocating P-type ATPase n=2 Tax=Ktedonosporobacter rubrisoli TaxID=2509675 RepID=A0A4P6K5T2_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQVRR 123
            ++ELQQ+GA VAMVGDGVNDAPALA ADVGIA+GAGT V R
Sbjct:  571 IRELQQSGAKVAMVGDGVNDAPALAQADVGIAIGAGTDVAR 611
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Copper-translocating (P-type ATPase n=1 Tax=Reticulibacter mediterranei TaxID=2778369 RepID=A0A8J3N661_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQVRR 123
            ++ELQQ+GA VAMVGDGVNDAPALA ADVGIA+GAGT V R
Sbjct:  577 IRELQQSGAKVAMVGDGVNDAPALAQADVGIAIGAGTDVAR 617
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Heavy (metal translocating P-type ATPase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4LR69_9CHLR)

HSP 1 Score: 62.4 bits (150), Expect = 3.050e-10
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQVRR 123
            V+ELQQAG  VAMVGDGVNDAPALA ADVG+A+GAGT V R
Sbjct:  373 VRELQQAGEKVAMVGDGVNDAPALAQADVGVAIGAGTDVAR 413
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Cu2+-exporting (ATPase n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A326UJM8_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 4.160e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQVRR 123
            V+ELQ++GA VAMVGDGVNDAPALA ADVGIA+GAGT V R
Sbjct:  594 VRELQRSGAKVAMVGDGVNDAPALAQADVGIAIGAGTDVAR 634
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Copper-exporting (ATPase n=4 Tax=Olsenella TaxID=133925 RepID=A0A134A7Q3_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 5.680e-10
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQV 117
            V+ELQ+AGA VAMVGDG+NDAPALA ADVGIA+GAGT V
Sbjct:  673 VRELQEAGARVAMVGDGINDAPALARADVGIAIGAGTDV 711
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Heavy (metal translocating P-type ATPase (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538R4G5_9DELT)

HSP 1 Score: 61.6 bits (148), Expect = 5.700e-10
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQV 117
            V+ELQQ G  VAMVGDGVNDAPALATAD+GIA+GAGT V
Sbjct:  519 VKELQQGGRKVAMVGDGVNDAPALATADIGIAIGAGTDV 557
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Copper-exporting (P-type ATPase A n=1 Tax=Methylibium sp. T29 TaxID=1430884 RepID=W7WF24_9BURK)

HSP 1 Score: 60.8 bits (146), Expect = 6.400e-10
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQVRR 123
            ++ELQQAG  VAMVGDGVNDAPALATAD+GIA+G+G+ V +
Sbjct:  126 IKELQQAGKVVAMVGDGVNDAPALATADIGIAIGSGSDVAK 166
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: ATPase (P n=2 Tax=Cellulomonas carbonis TaxID=1386092 RepID=A0A0A0BSL8_9CELL)

HSP 1 Score: 61.2 bits (147), Expect = 7.770e-10
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQV 117
            V ELQQ+G  VAMVGDGVNDAPALATAD+GIA+GAGT V
Sbjct:  687 VAELQQSGKRVAMVGDGVNDAPALATADIGIAIGAGTDV 725
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BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Match: Haloacid (dehalogenase n=1 Tax=Actinotalea fermentans TaxID=43671 RepID=A0A511Z1P7_9CELL)

HSP 1 Score: 61.2 bits (147), Expect = 7.770e-10
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQV 117
            V ELQ+AG  VAMVGDGVNDAPALATADVGIA+GAGT V
Sbjct:  636 VAELQRAGRRVAMVGDGVNDAPALATADVGIAIGAGTDV 674
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76727.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.760e-1292.31protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5... [more]
Heavy1.630e-1080.49metal translocating P-type ATPase n=2 Tax=Ktedonos... [more]
Copper-translocating1.630e-1080.49P-type ATPase n=1 Tax=Reticulibacter mediterranei ... [more]
Heavy3.050e-1080.49metal translocating P-type ATPase (Fragment) n=1 T... [more]
Cu2+-exporting4.160e-1080.49ATPase n=2 Tax=Thermosporothrix TaxID=768650 RepID... [more]
Copper-exporting5.680e-1082.05ATPase n=4 Tax=Olsenella TaxID=133925 RepID=A0A134... [more]
Heavy5.700e-1082.05metal translocating P-type ATPase (Fragment) n=1 T... [more]
Copper-exporting6.400e-1073.17P-type ATPase A n=1 Tax=Methylibium sp. T29 TaxID=... [more]
ATPase7.770e-1082.05P n=2 Tax=Cellulomonas carbonis TaxID=1386092 RepI... [more]
Haloacid7.770e-1084.62dehalogenase n=1 Tax=Actinotalea fermentans TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76727contigH-canaliculatus_M_contigs76727:130..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTS5
PFAMsE1-E2_ATPase,HMA,Hydrolase
Model size123
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.6e-12
EggNOG OGsCOG2217@1|root,KOG0207@2759|Eukaryota
EC3.6.3.54
Descriptioncation-transporting ATPase activity
Cds size123
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.7986407-CDS-H-canaliculatus_M_contigs76727:129..2521696854105.7986407-CDS-H-canaliculatus_M_contigs76727:129..252Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76727 130..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76727.1.1prot_H-canaliculatus_M_contigs76727.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76727 130..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76727.1.1

>prot_H-canaliculatus_M_contigs76727.1.1 ID=prot_H-canaliculatus_M_contigs76727.1.1|Name=mRNA_H-canaliculatus_M_contigs76727.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
VQELQQAGAYVAMVGDGVNDAPALATADVGIAVGAGTQVRR
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mRNA from alignment at H-canaliculatus_M_contigs76727:130..252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76727.1.1 ID=mRNA_H-canaliculatus_M_contigs76727.1.1|Name=mRNA_H-canaliculatus_M_contigs76727.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76727:130..252- (Hapterophycus canaliculatus Oshoro7m male)
GTGCAAGAGCTCCAGCAAGCCGGGGCCTACGTGGCGATGGTAGGGGACGG
GGTAAACGACGCCCCAGCCTTGGCCACCGCCGACGTGGGCATCGCTGTCG
GGGCCGGAACGCAGGTGAGAAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76727:130..252-

>mRNA_H-canaliculatus_M_contigs76727.1.1 ID=mRNA_H-canaliculatus_M_contigs76727.1.1|Name=mRNA_H-canaliculatus_M_contigs76727.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76727:130..252- (Hapterophycus canaliculatus Oshoro7m male)
GTGCAAGAGCTCCAGCAAGCCGGGGCCTACGTGGCGATGGTAGGGGACGG
GGTAAACGACGCCCCAGCCTTGGCCACCGCCGACGTGGGCATCGCTGTCG
GGGCCGGAACGCAGGTGAGAAGG
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