mRNA_H-canaliculatus_M_contigs76722.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76722.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76722.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.660e-19
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            AIE+KIKKICEAFRAKRY+LPEM+DGE VKKLMY+NYGEM+DARVVLLK
Sbjct:  345 AIESKIKKICEAFRAKRYDLPEMDDGEGVKKLMYDNYGEMHDARVVLLK 393
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BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.700e-11
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            AIEAKIKKIC+AF AKRY +P+M+D  +V++LM  NY +++DAR+VLLK
Sbjct:  292 AIEAKIKKICDAFGAKRYPVPDMDDYNAVRQLMDENYSDLHDARLVLLK 340
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BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZBJ5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.520e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            +IE K+KKIC+AF+A RY LP+M+D ESV  ++  N  E+ D+R VLLK
Sbjct:  250 SIELKLKKICDAFQAHRYSLPDMDDAESVDNMLTENAQELVDSRTVLLK 298
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BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSK8_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.920e-8
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            AIEAK+KKIC+AF+A RY +P+M+D  SV+ ++  N  ++ D+R VLLK
Sbjct:  228 AIEAKLKKICDAFQAHRYSIPDMDDATSVESMLTENAQDLVDSRTVLLK 276
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR98_FISSO)

HSP 1 Score: 55.8 bits (133), Expect = 8.920e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            +IE K+KKIC+AF A RY LP+M+D  SV+K++  N  E+ D+R VLLK
Sbjct:  251 SIELKLKKICDAFSAHRYSLPDMDDAASVEKMLSENAQELVDSRTVLLK 299
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BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHW8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-7
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            +IE K+KKIC+AF A RY LP+M+D  SV K++  N  E+ D+R VLLK
Sbjct:  253 SIETKLKKICDAFSAHRYSLPDMDDSPSVDKMLTENAQELVDSRTVLLK 301
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ92_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-7
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            AIE K+KKIC+AF A RY LP+M+D  +V K++  N  E+ D+R VLLK
Sbjct:  253 AIEQKLKKICDAFSAHRYSLPDMDDSSAVDKMLTENAQELVDSRTVLLK 301
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSE8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            +IE K+KKIC+AF+A RY LP+M+D  SV  ++ +N  E+ D+R VLLK
Sbjct:  228 SIEIKLKKICDAFQAHRYSLPDMDDAASVDNMLTDNAQELVDSRTVLLK 276
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3I2_PHATC)

HSP 1 Score: 53.9 bits (128), Expect = 4.270e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            +IE K+K+IC+AF A RY LP+M+D  SV K++  N  E+ D+R VLLK
Sbjct:  229 SIEGKLKRICDAFSAHRYSLPDMDDAGSVDKMLTENAQELVDSRTVLLK 277
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Match: V-type (proton ATPase subunit a n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWM2_CYCTE)

HSP 1 Score: 53.9 bits (128), Expect = 4.270e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK 147
            +IE K+KKIC+AF A RY LP+M+D  SV +++  N  E+ D+R VLLK
Sbjct:  204 SIETKLKKICDAFDAHRYSLPDMDDAASVDRMLTENAQELVDSRTVLLK 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76722.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
V-type2.660e-1987.76proton ATPase subunit a n=1 Tax=Ectocarpus silicul... [more]
V-type6.700e-1163.27proton ATPase subunit a n=1 Tax=Tribonema minus Ta... [more]
V-type6.520e-855.10proton ATPase subunit a n=2 Tax=Pseudo-nitzschia T... [more]
V-type8.920e-853.06proton ATPase subunit a n=1 Tax=Fragilariopsis cyl... [more]
V-type8.920e-855.10proton ATPase subunit a n=2 Tax=Fistulifera solari... [more]
V-type1.220e-755.10proton ATPase subunit a (Fragment) n=1 Tax=Amphipr... [more]
V-type1.220e-755.10proton ATPase subunit a n=1 Tax=Amphora coffeiform... [more]
V-type3.120e-753.06proton ATPase subunit a n=1 Tax=Fragilariopsis cyl... [more]
V-type4.270e-753.06proton ATPase subunit a n=3 Tax=Phaeodactylum tric... [more]
V-type4.270e-753.06proton ATPase subunit a n=2 Tax=Cyclophora tenuis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76722contigH-canaliculatus_M_contigs76722:57..203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPY6
PFAMsV_ATPase_I
Model size147
Max annot lvl2759|Eukaryota
KEGG koko:K02154
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko04966,ko05110,ko05120,ko05152,ko05165,ko05323,map00190,map01100,map04142,map04145,map04721,map04966,map05110,map05120,map05152,map05165,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.36e-20
EggNOG OGsCOG1269@1|root,KOG2189@2759|Eukaryota
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size147
COG categoryU
BRITEko00000,ko00001,ko00002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.7671075-CDS-H-canaliculatus_M_contigs76722:56..2031696854105.7671075-CDS-H-canaliculatus_M_contigs76722:56..203Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76722 57..203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76722.1.1prot_H-canaliculatus_M_contigs76722.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76722 57..203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76722.1.1

>prot_H-canaliculatus_M_contigs76722.1.1 ID=prot_H-canaliculatus_M_contigs76722.1.1|Name=mRNA_H-canaliculatus_M_contigs76722.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=49bp
AIEAKIKKICEAFRAKRYELPEMEDGESVKKLMYNNYGEMNDARVVLLK
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mRNA from alignment at H-canaliculatus_M_contigs76722:57..203-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76722.1.1 ID=mRNA_H-canaliculatus_M_contigs76722.1.1|Name=mRNA_H-canaliculatus_M_contigs76722.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76722:57..203- (Hapterophycus canaliculatus Oshoro7m male)
GCGATCGAGGCCAAGATCAAAAAGATCTGCGAGGCGTTCCGCGCGAAGCG
TTACGAGCTCCCCGAGATGGAAGACGGCGAGAGCGTGAAGAAGCTCATGT
ACAACAACTACGGCGAGATGAACGACGCCCGAGTGGTCCTCCTCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76722:57..203-

>mRNA_H-canaliculatus_M_contigs76722.1.1 ID=mRNA_H-canaliculatus_M_contigs76722.1.1|Name=mRNA_H-canaliculatus_M_contigs76722.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76722:57..203- (Hapterophycus canaliculatus Oshoro7m male)
GCGATCGAGGCCAAGATCAAAAAGATCTGCGAGGCGTTCCGCGCGAAGCG
TTACGAGCTCCCCGAGATGGAAGACGGCGAGAGCGTGAAGAAGCTCATGT
ACAACAACTACGGCGAGATGAACGACGCCCGAGTGGTCCTCCTCAAG
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