mRNA_H-canaliculatus_M_contigs76720.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76720.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76720.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-14
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK
Sbjct:   75 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084G848_PSEDA)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-8
Identity = 25/37 (67.57%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLY+KGGD+ DDELM+LIS+N++MS+TL++YG+ K
Sbjct: 1024 LDVLYNKGGDLSDDELMDLISENRSMSKTLQEYGSQK 1060
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0N0_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 1.940e-8
Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLYSKG +++DDEL+ELIS+N++MS+TLEDYG  K
Sbjct:  896 LDVLYSKGANLEDDELVELISENRSMSKTLEDYGAQK 932
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F8E7_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 3.630e-8
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLYSKG DV DDEL +LIS+N++MS++LEDYG+ K
Sbjct: 1014 LDVLYSKGADVPDDELFDLISENRSMSKSLEDYGSQK 1050
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3N409_9PEZI)

HSP 1 Score: 56.6 bits (135), Expect = 3.630e-8
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLY KGGD+ DDELM+LIS+N++MS+TL++YG  K
Sbjct: 1042 LDVLYHKGGDLSDDELMDLISENRSMSKTLQEYGNQK 1078
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EPB8_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 3.630e-8
Identity = 25/41 (60.98%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAKVPAL 123
            LDVLYSKG D++D+EL +L+S+N++MS+TLEDYG+ K  A+
Sbjct: 1028 LDVLYSKGADLNDEELFDLLSENRSMSKTLEDYGSQKSTAI 1068
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VS05_TILAU)

HSP 1 Score: 56.2 bits (134), Expect = 4.960e-8
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAKVPAL 123
            LDVLYSKG  +DDDEL++LI++NK+MS+TL +YGT K  A+
Sbjct: 1000 LDVLYSKGATLDDDELIDLIAENKSMSKTLAEYGTQKSTAI 1040
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A7K7_GONPJ)

HSP 1 Score: 55.8 bits (133), Expect = 6.790e-8
Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LD+LYSKG D++DDEL+ELIS+N++MS++LE+YG  K
Sbjct: 1076 LDILYSKGADLEDDELIELISENRSMSKSLEEYGAQK 1112
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BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HZ05_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 6.790e-8
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLYSKG +++DDEL ELIS+N++MS+TLEDYG  K
Sbjct: 1033 LDVLYSKGVELNDDELFELISENRSMSRTLEDYGAQK 1069
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Match: DNA (polymerase epsilon catalytic subunit n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168NS23_ABSGL)

HSP 1 Score: 55.8 bits (133), Expect = 6.790e-8
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAK 111
            LDVLYSKG ++ DDEL ELIS+N++MS+TLE+YGT K
Sbjct: 1033 LDVLYSKGVELQDDELFELISENRSMSRTLEEYGTQK 1069
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76720.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA1.110e-14100.00polymerase epsilon catalytic subunit n=1 Tax=Ectoc... [more]
DNA1.420e-867.57polymerase epsilon catalytic subunit n=1 Tax=Pseud... [more]
DNA1.940e-870.27polymerase epsilon catalytic subunit (Fragment) n=... [more]
DNA3.630e-870.27polymerase epsilon catalytic subunit n=1 Tax=Chytr... [more]
DNA3.630e-867.57polymerase epsilon catalytic subunit (Fragment) n=... [more]
DNA3.630e-860.98polymerase epsilon catalytic subunit n=1 Tax=Apoph... [more]
DNA4.960e-863.41polymerase epsilon catalytic subunit n=1 Tax=Tille... [more]
DNA6.790e-864.86polymerase epsilon catalytic subunit n=1 Tax=Gonap... [more]
DNA6.790e-870.27polymerase epsilon catalytic subunit n=1 Tax=Absid... [more]
DNA6.790e-870.27polymerase epsilon catalytic subunit n=1 Tax=Absid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76720contigH-canaliculatus_M_contigs76720:1..129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1051613.XP_003006948.1
Preferred namePOL2
PFAMsDNA_pol_B,DNA_pol_B_exo1,DUF1744
Model size129
Max annot lvl4751|Fungi
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000726,GO:0000731,GO:0000781,GO:0000784,GO:0000819,GO:0001672,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006272,GO:0006279,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010638,GO:0010847,GO:0010948,GO:0010964,GO:0010972,GO:0016043,GO:0016070,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031573,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0032991,GO:0033043,GO:0033044,GO:0033260,GO:0033314,GO:0033554,GO:0034061,GO:0034401,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0040029,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043596,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0044818,GO:0045004,GO:0045005,GO:0045786,GO:0045814,GO:0045892,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090052,GO:0090053,GO:0090230,GO:0090304,GO:0090305,GO:0097159,GO:0097549,GO:0098687,GO:0098813,GO:0140014,GO:0140097,GO:1900049,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902275,GO:1902292,GO:1902296,GO:1902315,GO:1902319,GO:1902494,GO:1902679,GO:1902749,GO:1902750,GO:1902969,GO:1902975,GO:1902983,GO:1903046,GO:1903047,GO:1903097,GO:1903460,GO:1903506,GO:1903507,GO:1905269,GO:1990234,GO:2000112,GO:2000113,GO:2001141,GO:2001252
Exons1
Evalue7.29e-08
EggNOG OGsCOG0417@1|root,KOG1798@2759|Eukaryota,38CFB@33154|Opisthokonta,3NV4K@4751|Fungi,3QNEF@4890|Ascomycota,213RM@147550|Sordariomycetes,1F0G7@1028384|Glomerellales
EC2.7.7.7
DescriptionDNA polymerase
Cds size129
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.733832-CDS-H-canaliculatus_M_contigs76720:0..1291696854105.733832-CDS-H-canaliculatus_M_contigs76720:0..129Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76720 1..129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76720.1.1prot_H-canaliculatus_M_contigs76720.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76720 1..129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76720.1.1

>prot_H-canaliculatus_M_contigs76720.1.1 ID=prot_H-canaliculatus_M_contigs76720.1.1|Name=mRNA_H-canaliculatus_M_contigs76720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=43bp
LDVLYSKGGDVDDDELMELISQNKTMSQTLEDYGTAKVPALV*
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mRNA from alignment at H-canaliculatus_M_contigs76720:1..129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76720.1.1 ID=mRNA_H-canaliculatus_M_contigs76720.1.1|Name=mRNA_H-canaliculatus_M_contigs76720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=129bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76720:1..129+ (Hapterophycus canaliculatus Oshoro7m male)
CTGGACGTGCTGTACTCCAAGGGGGGCGACGTTGACGACGACGAGCTGAT
GGAGCTCATCTCCCAGAACAAGACCATGTCTCAAACGCTCGAGGACTACG
GCACAGCCAAGGTGCCCGCACTCGTTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76720:1..129+

>mRNA_H-canaliculatus_M_contigs76720.1.1 ID=mRNA_H-canaliculatus_M_contigs76720.1.1|Name=mRNA_H-canaliculatus_M_contigs76720.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=129bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76720:1..129+ (Hapterophycus canaliculatus Oshoro7m male)
CTGGACGTGCTGTACTCCAAGGGGGGCGACGTTGACGACGACGAGCTGAT
GGAGCTCATCTCCCAGAACAAGACCATGTCTCAAACGCTCGAGGACTACG
GCACAGCCAAGGTGCCCGCACTCGTTTGA
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