mRNA_H-canaliculatus_M_contigs767.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs767.2.1
Unique NamemRNA_H-canaliculatus_M_contigs767.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs767.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ2_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 4.790e-100
Identity = 192/290 (66.21%), Postives = 226/290 (77.93%), Query Frame = 1 
Query:  493 HHHQPE-------GLRELSSAITQVESKLSLDSSEAGQLREALKTLRSEKEAYLRERASNISRTEDVSREFDEMRRRVATMEDELGRRNGLLRRAEEGREEVQQKLSATARQLASGFRKEKERFSRETEAAEARQGERGTSIISAAAKHERDRGYRERLRTLSDGLASTQLQLSTLKSERETQKREAAKVREDLMIQIARLEAQLKRVGEGVEKERADMETVMLNLSNALSGVDVQLKQSAGMTPSREASRALRRAQEDFRRDQRRVTLLLEKQRQRYDTASSVVEDEAQ 1341
            H HQ +       GLRELS+AI +VE+KLSLDSSEA QLREAL+ LRSEKEAY+RE+ S  +R E VSRE+D + RRVA  E ELGRR+G LR+AE  RE+ Q  LS  A+QLA+GF  EKE+FSRE ++AEA+QG  G + + AA KH+ DRGYRERLR LSDGLASTQLQL+TLKS R        + R+DL  Q+ARLEAQLKR G+G+EKE+ DME ++LNLSNALSGVD QL QSAGMTPSRE SRALRRA+EDFR +QRRV L LEKQRQRYD  SSVVE+EAQ
Sbjct:    4 HQHQQQQSEAVDRGLRELSAAIVRVETKLSLDSSEASQLREALRMLRSEKEAYVREKTSTAARMEAVSREYDILNRRVAVAEAELGRRSGRLRKAEVDREKTQATLSVRAQQLATGFGMEKEKFSREMQSAEAQQGTGGPAAV-AAEKHKIDRGYRERLRVLSDGLASTQLQLATLKSNRSKLAALEVEARKDLTTQVARLEAQLKRAGDGIEKEKTDMEKLLLNLSNALSGVDFQLTQSAGMTPSRETSRALRRAKEDFRLNQRRVKLHLEKQRQRYDATSSVVEEEAQ 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs767.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.790e-10066.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs767contigH-canaliculatus_M_contigs767:6225..11498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1341
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009290.1
Cds size1323
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs767.2.1prot_H-canaliculatus_M_contigs767.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs767 6243..11498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.3751497-UTR-H-canaliculatus_M_contigs767:6224..62421696854105.3751497-UTR-H-canaliculatus_M_contigs767:6224..6242Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs767 6225..6242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.3907678-CDS-H-canaliculatus_M_contigs767:6242..68151696854105.3907678-CDS-H-canaliculatus_M_contigs767:6242..6815Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 6243..6815 +
1696854105.4057086-CDS-H-canaliculatus_M_contigs767:6962..71021696854105.4057086-CDS-H-canaliculatus_M_contigs767:6962..7102Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 6963..7102 +
1696854105.4187787-CDS-H-canaliculatus_M_contigs767:7704..78741696854105.4187787-CDS-H-canaliculatus_M_contigs767:7704..7874Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 7705..7874 +
1696854105.4336-CDS-H-canaliculatus_M_contigs767:8798..89401696854105.4336-CDS-H-canaliculatus_M_contigs767:8798..8940Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 8799..8940 +
1696854105.446858-CDS-H-canaliculatus_M_contigs767:9798..99491696854105.446858-CDS-H-canaliculatus_M_contigs767:9798..9949Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 9799..9949 +
1696854105.4593964-CDS-H-canaliculatus_M_contigs767:10707..107811696854105.4593964-CDS-H-canaliculatus_M_contigs767:10707..10781Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 10708..10781 +
1696854105.4705203-CDS-H-canaliculatus_M_contigs767:11425..114981696854105.4705203-CDS-H-canaliculatus_M_contigs767:11425..11498Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs767 11426..11498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs767.2.1

>prot_H-canaliculatus_M_contigs767.2.1 ID=prot_H-canaliculatus_M_contigs767.2.1|Name=mRNA_H-canaliculatus_M_contigs767.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=441bp
MADSRYGLAFRTAHGERISSATSKPDGENILQRITTMASKRLPSPATATA
TATPSPPTPPSQHRTSTSPASPRLSSLPSNPIERFSGNHIPGKMEPAFIF
KIRSSGSLASTGFSKASADMPSMSSLAGRLVSDLRSRAFLPPGYKQQLRR
TASGLRQEHHHQPEGLRELSSAITQVESKLSLDSSEAGQLREALKTLRSE
KEAYLRERASNISRTEDVSREFDEMRRRVATMEDELGRRNGLLRRAEEGR
EEVQQKLSATARQLASGFRKEKERFSRETEAAEARQGERGTSIISAAAKH
ERDRGYRERLRTLSDGLASTQLQLSTLKSERETQKREAAKVREDLMIQIA
RLEAQLKRVGEGVEKERADMETVMLNLSNALSGVDVQLKQSAGMTPSREA
SRALRRAQEDFRRDQRRVTLLLEKQRQRYDTASSVVEDEAQ
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mRNA from alignment at H-canaliculatus_M_contigs767:6225..11498+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs767.2.1 ID=mRNA_H-canaliculatus_M_contigs767.2.1|Name=mRNA_H-canaliculatus_M_contigs767.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5274bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs767:6225..11498+ (Hapterophycus canaliculatus Oshoro7m male)
CGTGCAGGGCTATGGGTGATGGCAGACTCTAGATACGGTCTCGCATTTCG
GACGGCTCACGGCGAGAGGATTTCATCTGCCACTTCAAAGCCAGACGGCG
AGAATATTCTGCAACGCATTACGACGATGGCGTCGAAACGATTGCCATCA
CCAGCAACAGCAACAGCAACAGCAACGCCGTCGCCACCTACCCCACCATC
ACAACACCGAACATCAACTTCGCCAGCTTCGCCACGTTTGTCTTCGCTGC
CTTCTAATCCCATCGAGAGATTCTCTGGGAATCACATACCAGGCAAGATG
GAGCCAGCCTTCATCTTCAAAATAAGATCATCGGGCTCCCTTGCCTCAAC
GGGCTTCTCAAAGGCTTCCGCCGATATGCCGTCAATGTCGTCTCTAGCGG
GCCGCCTTGTCTCGGACCTCCGTTCTCGAGCTTTCTTGCCGCCTGGGTAC
AAGCAGCAGCTCAGACGCACAGCTAGCGGATTGCGGCAGGAGCATCATCA
CCAGCCGGAGGGGCTGCGGGAGCTGAGTTCAGCCATCACGCAGGTAGAAT
CCAAGCTCAGCTTGGACAGCTCGGAGGCCGGTCAGCTCAGGGTGAGAGAA
CGAAGCCTCAACAGAGTAAACCGGAGGTGTAATCACAGTACATTGCAAAT
GAAGGTTACGATGTAACATACTTCGAAGTCACCAACCCCCCAGAACTAAG
AAACGATCTTACTTCGCTCTTTGCAATGGGTTCAACAGGAAGCCTTAAAA
ACGCTACGGTCGGAGAAGGAGGCCTATCTACGGGAGCGCGCCTCGAATAT
CTCACGGACGGAAGACGTCTCCCGCGAGTTCGACGAGATGCGGCGTAGGG
TGGCGACAATGGAAGATGAACTTGGCCGGTGCGCTCGCGTCTACCTTTTC
GTGCATTTCTCGATTGTGCAGTAACCAGGGTCAAGCCTTCGGGTTCTATC
GAAAACCGGAAGCCTTTACACGGTGTGGCCAGGAGGACCGAGGAGATCTT
TTAAGTGGCGTGACTACTGTATTATCGAGACTTTTGCAAGGTATCAGAGA
GGGCTCTATCACGCCATGAACCAGAGGCATTGCCGCCCCTCCTTCTCCCA
CCACGGGGCTGTCCCGTGCGGCATGCGGGAGACTCTCGACCGTGCAAACG
TGTCATCGGCTTTTGAAGAAGCGGCTTTGACACTTAAACAATTCTCCGGC
GCCGCCTTATCATCTCACGTGTTTTGCCCCGTTGATTATCTTGCATACCA
TTTTGAAGTCTGGAGACCCCGCGCAGCTTTGTCTTTGGTTTCAGAGTTCG
TTCAAATGTTGTTTTGAGAAGATCGCCTTCGTGGTTTTATGTCTTCGATC
AATGCACGCGCTTGCATCGGACCCTATGAGCTTTCCCCCATGCTCCCCTC
TTTTAGTCCTGCTTCGATACGCCCCTCATTTCTCACGCTGTTTAAGTCGG
TTTGTGTGTACCTTCCCTTCCTACTTGCAGGCGCAACGGGCTGCTTCGGA
GGGCGGAGGAGGGACGTGAGGAAGTGCAGCAAAAGCTTTCGGCGACAGCA
CGGCAGCTCGCCAGCGGCTTCCGGAAGGAGAAAGAACGGTTTTCTAGAGA
GACGGAAGCGGCCGAGGCTCGACAGGGAGAGAGAGGTACTTCAATAATCT
GTTGGTCGGGTGCAGGGACGTTTTTGGATTGTTCACGTGGGCTCCTTGGT
TCGCATAGCATCTGCATGAGCGCCTTTAGTTTCGTAGCCAGCACAAGTGT
CAACGTGGGTAAAACATGTCAGAGGTAAAAGATGGAGAACCGACACATTA
CATGTTGACGAACGGGCTCTCGAGCGACGGTGGGTCGACATAATTCCTCG
AACGACAAAAAATCGACGAACGAACGGAACGGAATAGAAACTAATTTTAT
ATAATTGGTTGAAGGCCGGGGTGAACAAGAAAGTGATGTGATAAAAAAGG
CTCGGGTGTTGCAATAGTGCGTGCAAGCAAAGTGCGTGCACACCACCATC
TCTACGTTGCTGGAGGAACGACTTTCAACATATTTTGCTAATGATGACTA
CTCCGCCGTACCACTGCGTGCGGAGGTTTTTTAGATGGCCACGCACGTTG
CATTGTCATCCAAGTTTGCGTGCGCCCTTCCGAACCCCGCCCAACCTGGC
ACGCATTACGTGTCCTCAGTTTTGTACCACGGAGCCGACGTCTGTCTATC
GGTCCGCTGATAGCACGGCTGATGAAAACTTCAAATCAGACGCCCACCAC
ACGCGCGCTACCATGTCCTCTCTCTCGATCCCGAGGCTCGACCCGTCCTT
CCGTCGTTCTCTGCGGTCTCCCTGTTCGGGGGCTGAGGGACAAAGATGAG
CAGGAGGCACAAGATTCGCGTAAAGCATGCTGTCCGTTTTTATCTTGCTG
CAGACGTTACCGTCCTTCCATCGAATCGCCCGGTGTTGATCGACGCCGAG
CTCAAGAAACAGCAGGGCACGCACGAGCTCAGGCGCACATCGGCAAAACC
ACGTATCATAAAAGACACCCTCGTCGGGCATTCTTTTGTGCGCCGCTAAC
CCGCTATCCCAGGGTCAGTGGCAGCGGCAGCAGCAAAGCACGAACGAGAC
CGTGGTTACCGCGAGCGCTTGCGCACCCTGTCCGACGGCCTGGCGTCCAC
CCAATTACAGCTCTCCACGCTCAAGTCCGAGCGGGAAACGCAGAAACGCG
AGGCGGCCAAAGTCAGGTGTGTATCATGCAGCCAGTAGAAGAGCACGTTT
TCGCATGCGGAGCCAAAAGGATTTGCGCTGTGGCCGAGGTGTGCCTTGTG
CCACCTTCAACAAACGAGCGCCGAACGCTTTCCTCCGCAAGAGAAGTGAT
TCCGGGAGGGGCAGTTCGTTTGCGTGAAGGGTATCTGGCACAATTGCTCG
TGGGCCGTGTCTGGTTCTCTGCTTCTCTTTTTGGGTGGAAATGAGTCCCC
TGTCCGCAAGAGAGATAACACAACAAAAGAAGCATCGTTTCCAACCTTCA
CTGTGGTAAAAAACCGTGAAGTGCTGATTGGGCTGCCCAGCAAACGTTTC
GTCGTTCGTTGCTGTCGCTCCCCCCATTCACGCGAAAGTCTCCGACACCG
CCACATCTCTCCTCGACTGCAGCGCACCACTCTCTCCTTAGCTCCTCTTT
TCGAATGAATTGCTTCCGCATTCCCGCAGCAACCGTTTTCTTTCGTATAA
ATCTGCCCTGTTGGAGGGAGTTGTCGTCCAAGCATCAGCTCCACGTTTCG
GCGGTATTGCTTGGCAGAGGAAGGGATGAGCCACAGTTTTGAGCATTGGG
CAGGGCACTCCTTCAGTCAACGCGCTGGCTTGTGCTGCAATGGCTGTTGC
GCGACCTCCCAAGCCCCCACGCGCCTGAGCCACCCCGACCCGATACCATT
CGATTTTGTTCCGCTTCGCGCTTCACTGAAAATATGCGAAGAACATTTAT
GGGTCCTTCGCGGGGATCGGTTTCGTTCGACTTGTTCCACCAGCGTCACT
TCCCGGCAAGGATCTTCGTGGTCGCAACTCCTAGCAACACGCACGCGCTC
GCATCCACCTCGCAACCGCTCTAGGGAAGACCTTATGATCCAGATAGCGC
GTCTCGAAGCCCAGTTAAAGAGGGTGGGCGAGGGCGTGGAGAAGGAGAGG
GCGGACATGGAGACGGTAATGCTAAACCTGTCCAACGCGCTCTCTGGGGT
TGATGTTCAGCTCAAGCAGTCGGCGGTGAGTCGGGCCACTTCGTTGTTGT
TGCTTTCAGGAGAACTTTGATCCACCAAGGAGAAAGACCCCCGAACGACC
TCCTCGAGGAGGGCAGCGATCGTCCAAAAATACGGTGATTTTCTGGTGTC
GACTGCCCCTTTCAAACCCATTCTTACCTCCATGAATCGTTGCCCGTGGT
GTTAGCTTTGACCTGCACTGGCGAGGCTCGTCGGTTGGCGGGGCCAAGCG
TAGAGGAACCAACCAAGGTGGGATAAGGTAGTCGAGGGCGCGCAAAGCCA
AGCTATTCGTGCACCTGTCGCCGTCTTTGCAAGGCCGAAACAGCTGAGCG
ACGACGAGCATACGAGAGCTCGAGTCGCTGGAGTGTTTGGCGAAGGGGTA
GGCTCGCAGACGTCACACGAAACGAAAGCCTTTCACCAATCGAAGTTTCG
TACATGGTTCACCACACGCACACTGGGCTGAGCTTCCCAGCCTTTTCTGT
TTCTACTTTTGTTCCAACCATGCACAATGAGTCCTCATTGTTTGGACTCA
ACAGAACCTCGAGGTACGTTTCATTCGACGTCGCACGACGGAACTCAGGA
GGCGTTCCTACCGCGTTGTGTCTTTCTCGGAAAAACTTCCGATCACTTAG
TGGCTTGACTGTTGTGATCGCTTGGTGCGACCCAGCCTTGTCGCGAAGTA
AGAGCTTTATCGCCGCCGCACCTCACCTACCACCCCTCCTGCTACGACCA
ATCGGTTGATCGCTAAATGGATTCACCAATCAGGGCATGACCCCGAGTCG
AGAAGCGAGTCGAGCTCTGAGACGGGCACAGGAGGACTTCCGGCGGGATC
AACGGAGGTGTGGGAGTATATAAGTAGTGGTACCGTTCACGGGGTGCCAG
TTTCCACCTACGGTACATCAGAAGTCAAATCGGGGGAAAGTCAACGCAGG
GCCTGTCCACTGGTGTACGTCTTTCTTCATCCATGACCATGCAAGGGCAC
GTCGTACCTCCGGGTGGGCATGTGGAATCGATAGGATTCCGTCTCGTTCG
AGTCGGACGCGACTGAGTGTTGAGTTAAGTCTGAGCACGGAAAACGGAGG
TGTCCCGCAGAGGTAATACCTATATTTTGGTGTGGTATGGTTCAGACAAT
GATTTGGATAGCAGACAGCAACAACAACACAGTTCGACCAGGTCACCAGT
TTTTTGTTCCAGCCGCCACCTGCCAATTTCGTGTTGCTGCGCGGAGCGGG
TTCGCCTGTCGGAATTCTCGCAAGCTTTCTTCCTCTAGCCGCATTGCGAT
ATTGCACGTTTCGACATCTGCAAGAAAAAGAACATATACAAGTATGTTCA
AGTGGTATACTATACTATTTCTATGCCGAAACGGTGGTTCGCCGTTGAAA
CACCCTTTCCAAACACACAAAATGCGCGCCCGTCCTTCGCGAGAGCTGAA
TGCACAGGGTCGTGTAAATTCCTTTGTTGGTTTCGAAATGGTGCATGGCA
GGGTGACGCTCTTGCTGGAAAAGCAGCGACAGCGTTACGACACGGCGTCA
AGTGTGGTTGAAGACGAAGCTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs767:6225..11498+

>mRNA_H-canaliculatus_M_contigs767.2.1 ID=mRNA_H-canaliculatus_M_contigs767.2.1|Name=mRNA_H-canaliculatus_M_contigs767.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1323bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs767:6225..11498+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAGACTCTAGATACGGTCTCGCATTTCGGACGGCTCACGGCGAGAG
GATTTCATCTGCCACTTCAAAGCCAGACGGCGAGAATATTCTGCAACGCA
TTACGACGATGGCGTCGAAACGATTGCCATCACCAGCAACAGCAACAGCA
ACAGCAACGCCGTCGCCACCTACCCCACCATCACAACACCGAACATCAAC
TTCGCCAGCTTCGCCACGTTTGTCTTCGCTGCCTTCTAATCCCATCGAGA
GATTCTCTGGGAATCACATACCAGGCAAGATGGAGCCAGCCTTCATCTTC
AAAATAAGATCATCGGGCTCCCTTGCCTCAACGGGCTTCTCAAAGGCTTC
CGCCGATATGCCGTCAATGTCGTCTCTAGCGGGCCGCCTTGTCTCGGACC
TCCGTTCTCGAGCTTTCTTGCCGCCTGGGTACAAGCAGCAGCTCAGACGC
ACAGCTAGCGGATTGCGGCAGGAGCATCATCACCAGCCGGAGGGGCTGCG
GGAGCTGAGTTCAGCCATCACGCAGGTAGAATCCAAGCTCAGCTTGGACA
GCTCGGAGGCCGGTCAGCTCAGGGAAGCCTTAAAAACGCTACGGTCGGAG
AAGGAGGCCTATCTACGGGAGCGCGCCTCGAATATCTCACGGACGGAAGA
CGTCTCCCGCGAGTTCGACGAGATGCGGCGTAGGGTGGCGACAATGGAAG
ATGAACTTGGCCGGCGCAACGGGCTGCTTCGGAGGGCGGAGGAGGGACGT
GAGGAAGTGCAGCAAAAGCTTTCGGCGACAGCACGGCAGCTCGCCAGCGG
CTTCCGGAAGGAGAAAGAACGGTTTTCTAGAGAGACGGAAGCGGCCGAGG
CTCGACAGGGAGAGAGAGGTACTTCAATAATCTCGGCAGCAGCAAAGCAC
GAACGAGACCGTGGTTACCGCGAGCGCTTGCGCACCCTGTCCGACGGCCT
GGCGTCCACCCAATTACAGCTCTCCACGCTCAAGTCCGAGCGGGAAACGC
AGAAACGCGAGGCGGCCAAAGTCAGGGAAGACCTTATGATCCAGATAGCG
CGTCTCGAAGCCCAGTTAAAGAGGGTGGGCGAGGGCGTGGAGAAGGAGAG
GGCGGACATGGAGACGGTAATGCTAAACCTGTCCAACGCGCTCTCTGGGG
TTGATGTTCAGCTCAAGCAGTCGGCGGGCATGACCCCGAGTCGAGAAGCG
AGTCGAGCTCTGAGACGGGCACAGGAGGACTTCCGGCGGGATCAACGGAG
GGTGACGCTCTTGCTGGAAAAGCAGCGACAGCGTTACGACACGGCGTCAA
GTGTGGTTGAAGACGAAGCTCAG
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