mRNA_H-canaliculatus_M_contigs76686.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76686.2.1
Unique NamemRNA_H-canaliculatus_M_contigs76686.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76686.2.1 vs.
Match: Methyltransferase (domain n=2 Tax=Corynebacterium variabile TaxID=1727 RepID=A0A0X2NNP9_9CORY)

HSP 1 Score: 55.1 bits (131), Expect = 8.750e-8
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    7 DSTFGSDRRLTTERQRLEILFTRYAEMTAKKA 102
            D  FG+DR+LTTERQRLEILF RYAEMTA+KA
Sbjct:  909 DKAFGADRKLTTERQRLEILFARYAEMTAEKA 940
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BLAST of mRNA_H-canaliculatus_M_contigs76686.2.1 vs.
Match: GcrY (protein (Fragment) n=1 Tax=Corynebacterium variabile TaxID=1727 RepID=A0A3B9QSY1_9CORY)

HSP 1 Score: 52.8 bits (125), Expect = 5.730e-7
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 DADSTFGSDRRLTTERQRLEILFTRYAEMTAKK 99
            + D  FG+DR+LTTERQRLEILF RYAEMTA++
Sbjct:  908 EVDKAFGADRKLTTERQRLEILFARYAEMTAER 940
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BLAST of mRNA_H-canaliculatus_M_contigs76686.2.1 vs.
Match: GcrY (protein n=2 Tax=Corynebacterium falsenii TaxID=108486 RepID=A0A418Q7B9_9CORY)

HSP 1 Score: 50.8 bits (120), Expect = 2.740e-6
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 DADSTFGSDRRLTTERQRLEILFTRYAEMT 90
            + D  FGSDR+LTTERQRLEILF RYAEMT
Sbjct:  910 EVDRAFGSDRKLTTERQRLEILFARYAEMT 939
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BLAST of mRNA_H-canaliculatus_M_contigs76686.2.1 vs.
Match: GcrY (protein n=1 Tax=Corynebacterium nuruki TaxID=1032851 RepID=A0A3D4SXI2_9CORY)

HSP 1 Score: 50.1 bits (118), Expect = 5.140e-6
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:    1 DADSTFGSDRRLTTERQRLEILFTRYAEM 87
            + D  FG+DR+LTTERQRLEILFTRYAEM
Sbjct:  731 EVDKAFGADRKLTTERQRLEILFTRYAEM 759
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BLAST of mRNA_H-canaliculatus_M_contigs76686.2.1 vs.
Match: hypothetical (protein n=1 Tax=Corynebacterium sp. zg331 TaxID=2654674 RepID=UPI001D0DDD15)

HSP 1 Score: 45.4 bits (106), Expect = 4.110e-5
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    7 DSTFGSDRRLTTERQRLEILFTRYAEMT 90
            D   G++R+LTTERQRLE+LFTRYAE+T
Sbjct:   61 DKALGAERKLTTERQRLELLFTRYAEIT 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76686.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Methyltransferase8.750e-881.25domain n=2 Tax=Corynebacterium variabile TaxID=172... [more]
GcrY5.730e-772.73protein (Fragment) n=1 Tax=Corynebacterium variabi... [more]
GcrY2.740e-680.00protein n=2 Tax=Corynebacterium falsenii TaxID=108... [more]
GcrY5.140e-679.31protein n=1 Tax=Corynebacterium nuruki TaxID=10328... [more]
hypothetical4.110e-571.43protein n=1 Tax=Corynebacterium sp. zg331 TaxID=26... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76686contigH-canaliculatus_M_contigs76686:418..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1203567.HMPREF1286_01359
PFAMsN6_Mtase
Model size105
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000446
EggNOG OGsCOG1002@1|root,COG1002@2|Bacteria,2IA5I@201174|Actinobacteria,22KP6@1653|Corynebacteriaceae
DescriptionType II restriction enzyme, methylase subunits
Cds size105
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.334081-CDS-H-canaliculatus_M_contigs76686:417..5221696854105.334081-CDS-H-canaliculatus_M_contigs76686:417..522Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76686 418..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76686.2.1prot_H-canaliculatus_M_contigs76686.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76686 418..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76686.2.1

>prot_H-canaliculatus_M_contigs76686.2.1 ID=prot_H-canaliculatus_M_contigs76686.2.1|Name=mRNA_H-canaliculatus_M_contigs76686.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=35bp
DADSTFGSDRRLTTERQRLEILFTRYAEMTAKKA*
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mRNA from alignment at H-canaliculatus_M_contigs76686:418..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76686.2.1 ID=mRNA_H-canaliculatus_M_contigs76686.2.1|Name=mRNA_H-canaliculatus_M_contigs76686.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=105bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76686:418..522- (Hapterophycus canaliculatus Oshoro7m male)
GACGCCGATAGCACGTTCGGGTCGGACCGGAGGCTCACCACTGAGCGCCA
ACGCCTGGAGATCCTCTTCACCAGGTACGCAGAAATGACCGCGAAGAAGG
CCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76686:418..522-

>mRNA_H-canaliculatus_M_contigs76686.2.1 ID=mRNA_H-canaliculatus_M_contigs76686.2.1|Name=mRNA_H-canaliculatus_M_contigs76686.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=105bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76686:418..522- (Hapterophycus canaliculatus Oshoro7m male)
GACGCCGATAGCACGTTCGGGTCGGACCGGAGGCTCACCACTGAGCGCCA
ACGCCTGGAGATCCTCTTCACCAGGTACGCAGAAATGACCGCGAAGAAGG
CCTGA
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