mRNA_H-canaliculatus_M_contigs76644.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76644.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76644.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=2 Tax=Algibacter marinivivus TaxID=2100723 RepID=A0A2U2X685_9FLAO)

HSP 1 Score: 258 bits (659), Expect = 1.790e-78
Identity = 128/173 (73.99%), Postives = 157/173 (90.75%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINI+LKKG+LNSWKN+ ++V+N+NT+NF+TLRNSLL+NK+KLS+SLNVNGTKG+SRNTE+FQVFYP +TWDI+I+SKD  DNLS QLL+D D+S KTT+G+QYLGNSK P+ TD SISKIFN  N LDSLLVNNG N+ K+NSHL+N+HS TKLDTLGKSISFDLDYF+++S
Sbjct:  243 LINIVLKKGKLNSWKNSTALVNNLNTYNFLTLRNSLLYNKNKLSLSLNVNGTKGNSRNTEDFQVFYPNSTWDIDIESKDRLDNLSAQLLMDYDVSDKTTVGIQYLGNSKRPDLTDKSISKIFNALNTLDSLLVNNGMNDAKINSHLVNLHSITKLDTLGKSISFDLDYFTYDS 415          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=1 Tax=Flavobacteriaceae bacterium R38 TaxID=2697054 RepID=A0A6L9EV16_9FLAO)

HSP 1 Score: 256 bits (653), Expect = 8.430e-78
Identity = 129/173 (74.57%), Postives = 154/173 (89.02%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LIN+ILKKG LNSWKNT+S+ DNINT+NF+TLRNSLL+NK+KLS+S N+N TKG+SRN EEFQVFYP +TWDINI+SKD +DN+S QLL+D DIS+ TTIGLQYLG+++ P+  D SIS IFNQAN LDSLL+NNG N VKVNSHL+N+HS TKLDTLGKSISFDLDYFS++S
Sbjct:  212 LINVILKKGALNSWKNTISLTDNINTYNFVTLRNSLLYNKNKLSLSFNLNTTKGNSRNLEEFQVFYPNSTWDININSKDRRDNISAQLLLDYDISNNTTIGLQYLGDTRRPDLIDESISSIFNQANALDSLLINNGNNRVKVNSHLVNLHSVTKLDTLGKSISFDLDYFSYDS 384          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=1 Tax=Algibacter amylolyticus TaxID=1608400 RepID=A0A5M7BA50_9FLAO)

HSP 1 Score: 249 bits (636), Expect = 2.400e-75
Identity = 121/173 (69.94%), Postives = 153/173 (88.44%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINIILKKGQ++SWKNT++  DNINT+NF TLRNSLL+NK+K+S+S NVNGTKG SRN E+FQV+YP + WDI+I+SK+ +DNLSGQLL+D +++  TTIG+QYLGNSKTPN +D S+S+IFN+ N LDSLL+NNG N  KVNSHLIN+H+NTKLD+LGKSISFD+DYF++ S
Sbjct:  211 LINIILKKGQVDSWKNTLAFADNINTYNFATLRNSLLYNKNKVSLSFNVNGTKGSSRNIEDFQVYYPTSNWDIDINSKEKKDNLSGQLLLDYEVTESTTIGIQYLGNSKTPNMSDRSVSRIFNEQNTLDSLLINNGNNQSKVNSHLINVHANTKLDSLGKSISFDVDYFTYQS 383          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: OMP_b-brl_3 (domain-containing protein n=1 Tax=Gaetbulibacter sp. 4G1 TaxID=1891971 RepID=A0A2G5GL04_9FLAO)

HSP 1 Score: 246 bits (628), Expect = 3.500e-74
Identity = 121/173 (69.94%), Postives = 153/173 (88.44%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINI+LKKGQLNSWKNT+SI +NINT++F TLRNSLL+NK KLS+S NVNG KG+SRN E+FQV+YP +TWDI+I+SK+ +DNLS Q L+D  I+  TTIG+QYLGN+KTP+ TD SIS+IFN +N LDSLL+NNG N+ KVN+HLIN+H+NTKLD+LGKSISFD+DYF+++S
Sbjct:  211 LINIVLKKGQLNSWKNTISIAENINTYHFTTLRNSLLYNKSKLSLSFNVNGVKGNSRNIEDFQVYYPNSTWDIDINSKEREDNLSAQFLLDYGITENTTIGVQYLGNTKTPDLTDKSISRIFNHSNTLDSLLINNGNNHSKVNNHLINLHANTKLDSLGKSISFDVDYFTYDS 383          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=1 Tax=Sabulilitoribacter sp. BrNp1-15 TaxID=2916754 RepID=UPI001EE966F5)

HSP 1 Score: 191 bits (485), Expect = 1.120e-53
Identity = 91/173 (52.60%), Postives = 138/173 (79.77%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINI+LK+G  NSWKN+ SI+ NI+T+NF T RNSLLFNK+K+++SL+++ T+G+ R  E+FQV+YP +TWDI+I++KD++   SG++L+D D++  TTIG+QY GN   P+ +D SI+ I+N +N +DSLL+NNGK   +  SH +N+H+ TKLD+LG+ +SFD DYF++++
Sbjct:  212 LINIVLKRGTQNSWKNSTSIIHNIDTYNFTTFRNSLLFNKNKVNLSLSIDKTRGYIRGEEDFQVYYPTSTWDIDINTKDHKKAFSGRILLDYDVTKNTTIGVQYFGNKTNPDISDRSITNIYNTSNTIDSLLINNGKEFDERISHSLNLHAITKLDSLGRKLSFDADYFTYDA 384          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=1 Tax=Hyunsoonleella pacifica TaxID=1080224 RepID=A0A4Q9FTD2_9FLAO)

HSP 1 Score: 188 bits (477), Expect = 1.480e-52
Identity = 96/173 (55.49%), Postives = 131/173 (75.72%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINIILK G  NSWKNTVS++ NI+T+NF T+RNS  F KDKL++S +++ T+G+ R  E+FQVFYP +TWDI ID+KD++   SG+LL+D +I+  TTIG+QY GN   P  TD SI++I N AN +DSLLVNNG  +    SH +N+H+ TKLDTLG+++S D DYF++ +
Sbjct:  211 LINIILKTGTQNSWKNTVSVIHNIDTYNFTTIRNSFSFRKDKLNLSASLDKTRGNIRGIEDFQVFYPNSTWDIAIDTKDSKTAFSGRLLLDYNITDNTTIGVQYFGNETQPGITDRSITRIVNPANTIDSLLVNNGNEDQTRLSHSLNLHAITKLDTLGRTLSLDADYFTYEA 383          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=3 Tax=root TaxID=1 RepID=A0A831QTJ5_9FLAO)

HSP 1 Score: 188 bits (477), Expect = 1.490e-52
Identity = 97/173 (56.07%), Postives = 132/173 (76.30%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINIILKKG  +SWKNT ++  NINTH+F+T+RNSLL+ K+  ++SL+++ T G  +  E+FQV+YP N W+I I +KD QD  SG+LL+D +++ KTTIG+QYLGN++ P+  D SIS IFN A  LDSLL+N+G +    NSHLIN HS T+LDT+G+ +SFDLDYF + S
Sbjct:  212 LINIILKKGIQDSWKNTTTMSYNINTHSFLTVRNSLLYYKNSWNISLSLDNTSGSLQALEDFQVYYPENMWNIAITTKDKQDAFSGRLLLDYNLTGKTTIGMQYLGNNRQPDIKDKSISSIFNSAGTLDSLLINSGTSIHHTNSHLINAHSITELDTVGRKLSFDLDYFQYRS 384          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: OMP_b-brl_3 (domain-containing protein n=1 Tax=Tenacibaculum todarodis TaxID=1850252 RepID=A0A1L3JKJ0_9FLAO)

HSP 1 Score: 171 bits (432), Expect = 2.960e-46
Identity = 89/173 (51.45%), Postives = 124/173 (71.68%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINIILKKG  +SW+N+ ++V N N +NF T+RN+   NK+K+S+S +VN TKG+  N E  Q+ YP N WDIN+DSK + D+ SG++L+D  +S  TTIG+QYLGN+  P    T+ S I N  + LD  LVN G N+VK  ++ +N H+ T +D+LGKS+SFD+DYFSF+S
Sbjct:  216 LINIILKKGIQDSWRNSTTLVYNQNRYNFGTIRNNFYLNKNKISLSASVNATKGNFENAEGLQIKYPTNFWDINVDSKMSNDSFSGRVLLDYAVSENTTIGIQYLGNTSKPGGYTTTTSTILNNNDTLDRTLVNKGDNDVKNKNNSVNFHAITAIDSLGKSLSFDVDYFSFSS 388          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=2 Tax=Salinimicrobium marinum TaxID=680283 RepID=UPI00167BEBFC)

HSP 1 Score: 169 bits (427), Expect = 1.460e-45
Identity = 91/173 (52.60%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINIILKKG  +SW+N+  +  N N ++F ++ N+  +NKDK+S S ++N TKG   N E   + YP N WDI +DS+  +D LSG+ L+D  IS K T+GLQYLGN+  PN T T+ S IF+  NNL+  LVN G N+V  N+H +N H+ T+LDTLGKSISFD DYF FNS
Sbjct:  217 LINIILKKGVQDSWRNSTILSYNQNQYSFASISNNFFYNKDKISFSGSLNATKGGVENLEGLLIDYPTNNWDIAVDSELGKDQLSGRFLMDYAISEKITMGLQYLGNTSKPNITGTTTSSIFDNDNNLERTLVNQGDNDVDNNNHSLNFHAITQLDTLGKSISFDADYFIFNS 389          
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Match: TonB-dependent (receptor n=1 Tax=Tenacibaculum agarivorans TaxID=1908389 RepID=UPI00094B7C0C)

HSP 1 Score: 168 bits (426), Expect = 1.960e-45
Identity = 87/173 (50.29%), Postives = 120/173 (69.36%), Query Frame = 1
Query:    1 LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVNGTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTIGLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIHSNTKLDTLGKSISFDLDYFSFNS 519
            LINIILK+ +LNSW NT  +V N N +NF +LRN+  +NK+KLS+  ++N TKGH R+TE+ Q+ YP N WDI I+SK+  +N SG+  +D   S KTT+G+QYLGN   P    T  S +F++ N LD  + N G NN+   ++ IN H+ TKLDTLG+SI+ D DYF++NS
Sbjct:  212 LINIILKRSKLNSWNNTSRVVYNQNEYNFGSLRNNFSYNKNKLSLVASINATKGHFRHTEDLQIQYPQNFWDIAIESKERNENYSGRFQLDYQASEKTTLGMQYLGNITKPGGFTTVTSTVFDENNQLDRWIDNKGDNNIDRRNNAINFHAETKLDTLGRSIAIDADYFNYNS 384          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76644.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
TonB-dependent1.790e-7873.99receptor n=2 Tax=Algibacter marinivivus TaxID=2100... [more]
TonB-dependent8.430e-7874.57receptor n=1 Tax=Flavobacteriaceae bacterium R38 T... [more]
TonB-dependent2.400e-7569.94receptor n=1 Tax=Algibacter amylolyticus TaxID=160... [more]
OMP_b-brl_33.500e-7469.94domain-containing protein n=1 Tax=Gaetbulibacter s... [more]
TonB-dependent1.120e-5352.60receptor n=1 Tax=Sabulilitoribacter sp. BrNp1-15 T... [more]
TonB-dependent1.480e-5255.49receptor n=1 Tax=Hyunsoonleella pacifica TaxID=108... [more]
TonB-dependent1.490e-5256.07receptor n=3 Tax=root TaxID=1 RepID=A0A831QTJ5_9FL... [more]
OMP_b-brl_32.960e-4651.45domain-containing protein n=1 Tax=Tenacibaculum to... [more]
TonB-dependent1.460e-4552.60receptor n=2 Tax=Salinimicrobium marinum TaxID=680... [more]
TonB-dependent1.960e-4550.29receptor n=1 Tax=Tenacibaculum agarivorans TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76644contigH-canaliculatus_M_contigs76644:3..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1317122.ATO12_03090
PFAMsCarbopepD_reg_2,CarboxypepD_reg,OMP_b-brl_3
Model size519
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-48
EggNOG OGsCOG1629@1|root,COG4771@2|Bacteria,4NEIG@976|Bacteroidetes,1IJ85@117743|Flavobacteriia,2YJ6H@290174|Aquimarina
DescriptionOuter membrane protein beta-barrel family
Cds size519
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.7888339-CDS-H-canaliculatus_M_contigs76644:2..5211696854104.7888339-CDS-H-canaliculatus_M_contigs76644:2..521Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76644 3..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76644.1.1prot_H-canaliculatus_M_contigs76644.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76644 3..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76644.1.1

>prot_H-canaliculatus_M_contigs76644.1.1 ID=prot_H-canaliculatus_M_contigs76644.1.1|Name=mRNA_H-canaliculatus_M_contigs76644.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
LINIILKKGQLNSWKNTVSIVDNINTHNFITLRNSLLFNKDKLSVSLNVN
GTKGHSRNTEEFQVFYPANTWDINIDSKDNQDNLSGQLLIDCDISSKTTI
GLQYLGNSKTPNTTDTSISKIFNQANNLDSLLVNNGKNNVKVNSHLINIH
SNTKLDTLGKSISFDLDYFSFNS
back to top

mRNA from alignment at H-canaliculatus_M_contigs76644:3..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76644.1.1 ID=mRNA_H-canaliculatus_M_contigs76644.1.1|Name=mRNA_H-canaliculatus_M_contigs76644.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76644:3..521+ (Hapterophycus canaliculatus Oshoro7m male)
TTAATAAATATTATTTTAAAAAAAGGACAACTAAACTCGTGGAAAAACAC CGTATCAATAGTAGATAATATTAATACCCATAATTTTATCACCCTTAGAA ATAGTTTACTCTTCAATAAAGACAAATTAAGTGTGTCTCTTAATGTAAAT GGCACTAAAGGACACTCTAGAAACACAGAAGAATTCCAAGTTTTTTACCC TGCTAATACTTGGGATATTAATATTGATTCAAAAGACAATCAGGATAATC TATCTGGTCAATTACTAATTGATTGTGATATCTCTTCTAAAACTACGATA GGTTTACAGTATTTAGGTAATTCTAAAACTCCAAATACAACAGATACTAG TATATCAAAAATTTTCAACCAAGCTAATAACTTAGACTCATTATTGGTAA ATAATGGTAAAAACAATGTTAAAGTAAATAGTCATCTAATTAACATACAC TCAAACACAAAGCTGGATACTCTTGGGAAAAGCATATCATTTGATTTAGA TTACTTCTCTTTTAATTCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76644:3..521+

>mRNA_H-canaliculatus_M_contigs76644.1.1 ID=mRNA_H-canaliculatus_M_contigs76644.1.1|Name=mRNA_H-canaliculatus_M_contigs76644.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76644:3..521+ (Hapterophycus canaliculatus Oshoro7m male)
TTAATAAATATTATTTTAAAAAAAGGACAACTAAACTCGTGGAAAAACAC
CGTATCAATAGTAGATAATATTAATACCCATAATTTTATCACCCTTAGAA
ATAGTTTACTCTTCAATAAAGACAAATTAAGTGTGTCTCTTAATGTAAAT
GGCACTAAAGGACACTCTAGAAACACAGAAGAATTCCAAGTTTTTTACCC
TGCTAATACTTGGGATATTAATATTGATTCAAAAGACAATCAGGATAATC
TATCTGGTCAATTACTAATTGATTGTGATATCTCTTCTAAAACTACGATA
GGTTTACAGTATTTAGGTAATTCTAAAACTCCAAATACAACAGATACTAG
TATATCAAAAATTTTCAACCAAGCTAATAACTTAGACTCATTATTGGTAA
ATAATGGTAAAAACAATGTTAAAGTAAATAGTCATCTAATTAACATACAC
TCAAACACAAAGCTGGATACTCTTGGGAAAAGCATATCATTTGATTTAGA
TTACTTCTCTTTTAATTCA
back to top