mRNA_H-canaliculatus_M_contigs7662.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7662.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7662.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Myosin (light chain kinase (MLCK) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC78_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 5.910e-94
Identity = 141/183 (77.05%), Postives = 158/183 (86.34%), Query Frame = 1
Query:    1 AGILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEERIKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGL--SVVGAVKRTLAGKPFFNEVQWDAVSE 543
            AGILTGL+H H++E+R  YKW+ AYCLAME MEGGELCEDI+RRVFYSEACARRIILQVL ALA+LHRRGI HRD+KPENLLL RRG E +KLADFG A VLS PTYKVVEPVGSPGYAA E+LRV+PYDG+ADVFSLGVISFVLLSGYLPFGG+  ++   V  TL G P F+EVQW AVS+
Sbjct:   95 AGILTGLTHAHVVEMRGFYKWEQAYCLAMERMEGGELCEDIVRRVFYSEACARRIILQVLDALAFLHRRGIIHRDLKPENLLLVRRGSEYVKLADFGFAAVLSQPTYKVVEPVGSPGYAAAEVLRVMPYDGQADVFSLGVISFVLLSGYLPFGGVEGTLTETVNATLEGNPPFDEVQWSAVSD 277          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP3_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 2.320e-89
Identity = 137/183 (74.86%), Postives = 153/183 (83.61%), Query Frame = 1
Query:    1 AGILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEERIKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLS--VVGAVKRTLAGKPFFNEVQWDAVSE 543
            AGILTGL+H H++E+R  YKW+ AYCLAME MEGGELCEDI+RRVFYSEACARR    VL ALA+LHRRGI HRD+KPENLLL RRG E +KLADFG A VLS PTYKVVEPVGSPGYAAPE+LRV+PYDG+ADVFSLGVISFVLLSGYLPFGG+   +   V  T  G P F+EVQW AVS+
Sbjct:   77 AGILTGLTHAHVVEMRGFYKWEQAYCLAMERMEGGELCEDIVRRVFYSEACARR----VLDALAFLHRRGIIHRDLKPENLLLVRRGSEYVKLADFGFAAVLSQPTYKVVEPVGSPGYAAPEVLRVMPYDGQADVFSLGVISFVLLSGYLPFGGVDDPLTEIVNATFEGNPPFDEVQWSAVSD 255          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8N5_9STRA)

HSP 1 Score: 139 bits (351), Expect = 4.500e-37
Identity = 76/181 (41.99%), Postives = 111/181 (61.33%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLL-RRRGEERIKLADFGLAT-VLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSE 543
            IL  L+H HII + D ++    Y L ME M GGEL + I+ + +Y+E  AR +   +++++ Y H+ G+ HRD+KPENLLL     +  +K+ADFG A  VL+P T  +    G+PGY APE+L  IPYD RAD++S+GVI ++LL GY PF   +     ++   G   F+E  W  VS+
Sbjct:   60 ILKELTHRHIIRLYDFFEEPANYYLIMERMSGGELFDRIVAKAYYNEKEARDVCRILIESVGYCHKHGVAHRDLKPENLLLVSEDNDAEVKIADFGFAKKVLAPKT--LTTQCGTPGYVAPEILEGIPYDTRADMWSVGVILYILLGGYPPFIENNQRELFRKIRRGDYEFHEEYWGTVSK 238          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IFM0_9SPIT)

HSP 1 Score: 136 bits (343), Expect = 7.710e-37
Identity = 76/180 (42.22%), Postives = 110/180 (61.11%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRR--GEERIKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVS 540
            IL  + H +I+++ D+++ +   CL ME M GGEL + II +  +SE  AR     ++ A+ Y H RGICHRD+KPENLLL+ +  G   +KLADFGLA +L   T  +    GSPGY APE+L   PY  + D +S+GV++++LLSG  PF     V   ++ +A K  F +  W +VS
Sbjct:   44 ILKQMDHPNIVKLLDVFEDEKYLCLVMELMTGGELFDLIIEKEQFSELEAREATRSLIDAIGYCHSRGICHRDIKPENLLLQSKELGLSSLKLADFGLARLLDEKTM-LKTMCGSPGYVAPEVLEEKPYGKQCDCWSIGVVTYILLSGIPPFFADDNVQLFEQIIACKYDFTDENWTSVS 222          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Protein (kinase C4 (Fragment) n=1 Tax=Acanthamoeba castellanii TaxID=5755 RepID=H9C880_ACACA)

HSP 1 Score: 139 bits (351), Expect = 1.030e-36
Identity = 77/182 (42.31%), Postives = 112/182 (61.54%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEER---IKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSE 543
            I+  L+H +I+++ ++Y+ D  + L ME ++G EL + I+ R  YSE  A  IILQV+ A+ YLH  GI HRD+KPENLL    GEE    +K+ADFG +   +    K++   GSPGY APE+L    YD   D++S+GVI ++LLSGY PF   S     K+ +  K  F++  WD +S+
Sbjct:  132 IMKKLNHPNILKLYEVYEDDEQFYLVMELVKGKELFDKIVERGMYSERDAANIILQVVSAVRYLHENGIAHRDLKPENLLSA--GEEENEIVKIADFGFSKSFADEGEKLMTSCGSPGYVAPEILTAESYDKSVDMWSVGVIIYILLSGYPPFYADSAPALFKKIMDVKYDFDDSVWDDISD 311          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Protein (kinase domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3H4V3_PHYRM)

HSP 1 Score: 137 bits (346), Expect = 2.830e-36
Identity = 76/181 (41.99%), Postives = 115/181 (63.54%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYC-LAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEER-IKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSE 543
            IL  +SH +II++ D+Y  D   C L ME+ EGGEL + II + +Y+EA A++++  V + L Y H  G+ HRD+KPENLL     E   IK+ADFG A +++  T  +    G+PGY APE++R +PYD + D++SLGVI+++LL G+ PF   + V  +++ L G   F    +D VS+
Sbjct:   63 ILKDMSHPNIIKLFDVYDGDGPMCFLVMEYAEGGELFDRIIAKEYYTEAEAKKVVKVVAKVLRYCHSEGVTHRDLKPENLLYADETENAVIKIADFGFAKLVTEET-NMSTMCGTPGYYAPEIVRKLPYDSKCDIWSLGVIAYILLCGFPPFYDENQVEEMRKILNGDFEFVAPYFDGVSQ 242          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJN9_PYTOL)

HSP 1 Score: 137 bits (346), Expect = 2.830e-36
Identity = 77/182 (42.31%), Postives = 116/182 (63.74%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYC-LAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEE-RIKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSEV 546
            IL  L H +II++ D+Y+ D   C L ME   GGEL + II + +Y+EA A+R++  V + LAY H  G+ HRD+KPENLL     E+ +IK+ADFG A +++  T  +    G+PGY APE++R  PYD + D++SLGVI+++LL G+ PF   + V  +++ L G+  F    +D VS +
Sbjct:   63 ILKELDHPNIIKLFDVYEDDRDMCYLVMEFAAGGELFDRIIAKEYYTEAEAKRVVKVVAKVLAYCHAEGVTHRDLKPENLLYADESEDAKIKIADFGFAKLVTAET-NMSTMCGTPGYYAPEIVRKQPYDNKCDIWSLGVITYILLCGFPPFYDENQVEEMRKILHGEFEFVAPYFDGVSSL 243          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Pkinase-domain-containing (protein n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y1VDS2_9FUNG)

HSP 1 Score: 138 bits (347), Expect = 4.690e-36
Identity = 76/181 (41.99%), Postives = 119/181 (65.75%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEE-RIKLADFGLATVLSPPTYKVVEPV-GSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSE 543
            IL+ + HE+I+++ DLY+ D    L ME + GGEL +DI+RR  Y+E+ A RI+ ++L A+ YLH  GI HRD+KPENLLL  + +  ++ ++DFGL+ + +    +V++   G+PGY APE+L+   Y    D++S+GVI+++LL GY PF   + V   K+ LA +  F +  WD +SE
Sbjct:   67 ILSKVHHENIVQLYDLYQIDNKIYLVMELVTGGELFDDIVRRGKYTESDAARIVQKILLAIDYLHGMGIAHRDLKPENLLLSDKSKNGKVMISDFGLSKIFN--DEEVMKTACGTPGYVAPEVLKRQGYGKEVDLWSIGVITYILLCGYPPFYDQNNVELYKQILACRYEFEKPWWDNISE 245          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Protein (kinase domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7ILW3_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.690e-36
Identity = 75/182 (41.21%), Postives = 116/182 (63.74%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYCL-AMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEER-IKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSEV 546
            IL  L H +II++ D+Y  D   CL  ME+ EGGEL + II + +Y+E  A++++  V + L Y H  G+ HRD+KPENLL   + E+  IK+ADFG A +++  T  +    G+PGY APE++R +PYD + D++SLGVI+++LL G+ PF   + V  +++ L G   F    +D VS++
Sbjct:   63 ILKDLKHPNIIKLHDVYDGDGPMCLLVMENAEGGELFDRIIAKEYYTEGEAKKVVKVVAKVLRYCHAAGVTHRDLKPENLLYADKTEDSVIKIADFGFAKLVTEET-NMSTMCGTPGYYAPEIVRKLPYDSKCDIWSLGVIAYILLCGFPPFYDENQVEEMRKILNGDFEFVAPYFDGVSQL 243          
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DQ56_BRELC)

HSP 1 Score: 137 bits (344), Expect = 5.850e-36
Identity = 75/181 (41.44%), Postives = 117/181 (64.64%), Query Frame = 1
Query:    7 ILTGLSHEHIIEVRDLYKWDLAYC-LAMEHMEGGELCEDIIRRVFYSEACARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEER-IKLADFGLATVLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYLPFGGLSVVGAVKRTLAGKPFFNEVQWDAVSE 543
            IL  + H +II+++D++  D   C + ME+ +GGEL + II + +YSEA A++++  V +AL Y H RG+ HRD+KPENLL     +   IK+ADFG A +L  P+  ++   G+PGY APE++R +PY+ + D++SLGVI+++LL G+ PF   S V  ++  L G   F    +D VS+
Sbjct:   63 ILKHMCHPNIIKLQDVFDEDGRMCYMVMEYAKGGELFDRIIAKEYYSEAEAKKVVKVVAKALRYCHARGVTHRDLKPENLLYADETDNSVIKVADFGFAKLLKEPS-NMLTMCGTPGYYAPEIVRKLPYNSKCDIWSLGVITYILLCGFPPFYSESHVEEMQNILNGAFEFIAPYFDKVSQ 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7662.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Myosin5.910e-9477.05light chain kinase (MLCK) n=1 Tax=Ectocarpus silic... [more]
Protein2.320e-8974.86kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
Hypothetical4.500e-3741.99protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical7.710e-3742.22protein (Fragment) n=1 Tax=Strombidium inclinatum ... [more]
Protein1.030e-3642.31kinase C4 (Fragment) n=1 Tax=Acanthamoeba castella... [more]
Protein2.830e-3641.99kinase domain-containing protein n=17 Tax=Phytopht... [more]
Uncharacterized2.830e-3642.31protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Pkinase-domain-containing4.690e-3641.99protein n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y1V... [more]
Protein4.690e-3641.21kinase domain-containing protein n=4 Tax=Phytophth... [more]
Protein5.850e-3641.44kinase domain-containing protein n=1 Tax=Bremia la... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7662contigH-canaliculatus_M_contigs7662:185..1717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC78
PFAMsPkinase
Model size558
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.7e-95
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
Ec32 ortholog descriptionMyosin light chain kinase (MLCK)
Ec32 orthologEc-20_004740.1
Descriptionprotein serine/threonine kinase activity
Cds size558
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.6586611-CDS-H-canaliculatus_M_contigs7662:184..3001696854104.6586611-CDS-H-canaliculatus_M_contigs7662:184..300Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7662 185..300 -
1696854104.6736264-CDS-H-canaliculatus_M_contigs7662:767..9331696854104.6736264-CDS-H-canaliculatus_M_contigs7662:767..933Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7662 768..933 -
1696854104.6917515-CDS-H-canaliculatus_M_contigs7662:1135..12491696854104.6917515-CDS-H-canaliculatus_M_contigs7662:1135..1249Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7662 1136..1249 -
1696854104.7054086-CDS-H-canaliculatus_M_contigs7662:1555..17171696854104.7054086-CDS-H-canaliculatus_M_contigs7662:1555..1717Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7662 1556..1717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7662.1.1prot_H-canaliculatus_M_contigs7662.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7662 185..1717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7662.1.1

>prot_H-canaliculatus_M_contigs7662.1.1 ID=prot_H-canaliculatus_M_contigs7662.1.1|Name=mRNA_H-canaliculatus_M_contigs7662.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=186bp
AGILTGLSHEHIIEVRDLYKWDLAYCLAMEHMEGGELCEDIIRRVFYSEA
CARRIILQVLQALAYLHRRGICHRDVKPENLLLRRRGEERIKLADFGLAT
VLSPPTYKVVEPVGSPGYAAPELLRVIPYDGRADVFSLGVISFVLLSGYL
PFGGLSVVGAVKRTLAGKPFFNEVQWDAVSEVRLC*
back to top

mRNA from alignment at H-canaliculatus_M_contigs7662:185..1717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7662.1.1 ID=mRNA_H-canaliculatus_M_contigs7662.1.1|Name=mRNA_H-canaliculatus_M_contigs7662.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7662:185..1717- (Hapterophycus canaliculatus Oshoro7m male)
GCCGGTATCCTGACGGGCCTCTCGCACGAGCACATTATCGAGGTGCGGGA TCTCTACAAGTGGGATCTTGCGTACTGCCTCGCGATGGAGCACATGGAGG GGGGCGAGCTCTGTGAGGACATCATTCGGAGGGTGTTCTACTCCGAGGCA TGCGCGCGGAGGGTGAGCCGAGACCAAAAACGCCCCAAAATGCCATCAGG CCCCGGCCACCCGTGTACGGTTACCTGCCGGTCGGCTCGTTCGAAAGCGT GCAGAGCGCTTCGTTCTTGTAGAAGCATCTCAAGCCCCCCCCTCCGCAAT CCGCCTTCTTTCTGTCTTTCGGGGTCATTGACGCCGATATTTACGACTGA ACGGTGTCTCCTTTCTTTGGGGCCTCCTCCCCAGGAAAATCCGCATGTAA TAACACAGTCACGAGCCCTGACATGTTTTTGACGTGTTTCTGTTCCTTAA CTCGTCCGTCCCCCTTAGATTATTCTGCAGGTACTGCAGGCATTGGCGTA CTTGCACCGAAGAGGAATCTGCCACCGCGATGTCAAGCCCGAGAATCTTC TCCTACGACGACGCGGTGAAGAACGGATCAAAGTAAGTGGCAACCGCGTC TCACGACACAAAATCGAGTGATGTGTGACATGCTTTGTCACCACGGCGGT TGTATTATTGGTGTTATCCGGAATACCAGTACATGCCACCACTTTCTATC GCATCTTGCACCAATTGTTTCCTTGTGCTCCTCTGCCGTTTGCCGAACCC GCGCAAATCTGTGCTCCTCTTCGTATCATCTCAGTTGGCGGATTTCGGCT TGGCAACGGTACTTAGCCCTCCAACTTACAAGGTCGTGGAGCCTGTTGGA TCTCCGGGATACGCAGCGCCAGAATTGCTGCGCGTTATCCCCTACGACGG CAGGGCGGACGTGTTCAGTCTAGGAGTCATCTCCTTCGTGCTCCTTTCTG GTGTGTGCGTTGGGTTGATTTCCTGCACGACCGCGACTAAGAATATTATC CCATCATCGACACTCATTCTCAGCGGTATGCCAAATGAAAGAAGACGATG AAAGCTTTCCTTCCTCTCAAAGACGCACTTGTGATTTCGGCGTGTACCTG GGAGCGGGTGTAAACACACCCATAAGGCAAGAGACTAGCGTCCAGAATCC ACAAAACGAAACAAGAAACAAGGGCTCGAACACCTTTGAGATCCAAGCGA ACGACAATGTGTCTACGCCAGAGTTCCGTTTCATTCCCAGGGCCATAACC ACTGTCTGATTCCACCGCCGCTGCCCACACACCACGAAGGTAGACAACCT ACTAATAGGCACTTTACAAAGGTTGTTCGCTTCTTCGTGCGACCGGATCG AAGAACCCTTTCCTCGTCAGCCGACGTACGTGCTTGGATCCTTACCGGCG TATCGGCACGTTTTCAGGCTACCTTCCGTTCGGAGGGCTTTCGGTTGTCG GAGCGGTGAAGAGGACTTTGGCAGGCAAACCATTCTTCAACGAAGTTCAG TGGGATGCGGTCTCGGAGGTAAGATTGTGCTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7662:185..1717-

>mRNA_H-canaliculatus_M_contigs7662.1.1 ID=mRNA_H-canaliculatus_M_contigs7662.1.1|Name=mRNA_H-canaliculatus_M_contigs7662.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7662:185..1717- (Hapterophycus canaliculatus Oshoro7m male)
GCCGGTATCCTGACGGGCCTCTCGCACGAGCACATTATCGAGGTGCGGGA
TCTCTACAAGTGGGATCTTGCGTACTGCCTCGCGATGGAGCACATGGAGG
GGGGCGAGCTCTGTGAGGACATCATTCGGAGGGTGTTCTACTCCGAGGCA
TGCGCGCGGAGGATTATTCTGCAGGTACTGCAGGCATTGGCGTACTTGCA
CCGAAGAGGAATCTGCCACCGCGATGTCAAGCCCGAGAATCTTCTCCTAC
GACGACGCGGTGAAGAACGGATCAAATTGGCGGATTTCGGCTTGGCAACG
GTACTTAGCCCTCCAACTTACAAGGTCGTGGAGCCTGTTGGATCTCCGGG
ATACGCAGCGCCAGAATTGCTGCGCGTTATCCCCTACGACGGCAGGGCGG
ACGTGTTCAGTCTAGGAGTCATCTCCTTCGTGCTCCTTTCTGGCTACCTT
CCGTTCGGAGGGCTTTCGGTTGTCGGAGCGGTGAAGAGGACTTTGGCAGG
CAAACCATTCTTCAACGAAGTTCAGTGGGATGCGGTCTCGGAGGTAAGAT
TGTGCTGA
back to top