mRNA_H-canaliculatus_M_contigs76615.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76615.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76615.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: ADP-ribosylation (factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.200e-18
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   22 MDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKSVS 144
            MDCG PETSWGGPTYGILLCV CAGRHRSLGTHLTVIKS++
Sbjct:    1 MDCGAPETSWGGPTYGILLCVKCAGRHRSLGTHLTVIKSLA 41
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BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: ARFGAP3 ((Fragment) n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212CCM8_CEREH)

HSP 1 Score: 60.8 bits (146), Expect = 5.690e-11
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   13 SVCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            SVC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:   10 SVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRS 51
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BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: Arf-GAP (domain-containing protein n=2 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7JLM9_BIOOC)

HSP 1 Score: 64.7 bits (156), Expect = 5.970e-11
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   13 SVCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKSVS 144
            +VC DCG P   W  P +GI +C+TCAG+HR LG H++ ++SVS
Sbjct:   27 NVCCDCGAPSPQWASPKFGIFICLTCAGKHRGLGVHISFVRSVS 70
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BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: ADP-ribosylation (factor GTPase-activating protein-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086THG5_ACRC1)

HSP 1 Score: 64.7 bits (156), Expect = 6.160e-11
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   13 SVCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKSVS 144
            +VC DCG P   W  P +GI +C+TCAG+HR LG H++ ++SVS
Sbjct:   27 NVCCDCGAPSPQWASPKFGIFICLTCAGKHRGLGVHISFVRSVS 70
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: Arf-GAP (domain-containing protein n=2 Tax=Neognathae TaxID=8825 RepID=A0A8D0FP77_STROC)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-10
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 FMEQSVCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            F+   VC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:   14 FIFFKVCFDCGAKNPSWASITYGVFLCIDCSGTHRSLGVHLSFIRS 59
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: Arf-GAP (domain-containing protein n=1 Tax=Strix occidentalis caurina TaxID=311401 RepID=A0A8D0FS90_STROC)

HSP 1 Score: 60.1 bits (144), Expect = 1.290e-10
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 FMEQSVCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            F+   VC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:   14 FIFFKVCFDCGAKNPSWASITYGVFLCIDCSGTHRSLGVHLSFIRS 59
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: Arf-GAP (domain-containing protein n=2 Tax=Pavo cristatus TaxID=9049 RepID=A0A8C9G718_PAVCR)

HSP 1 Score: 59.7 bits (143), Expect = 2.120e-10
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   16 VCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            VC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:   26 VCFDCGSKNPSWASITYGVFLCIDCSGTHRSLGVHLSFIRS 66
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: ADP (ribosylation factor GTPase activating protein 3 n=2 Tax=Marmotini TaxID=337730 RepID=A0A8C5YPQ8_MARMA)

HSP 1 Score: 59.3 bits (142), Expect = 2.480e-10
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   16 VCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            VC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:   17 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRS 57
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: ADP (ribosylation factor GTPase activating protein 3 n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8FVB8_MOLMO)

HSP 1 Score: 59.3 bits (142), Expect = 2.540e-10
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   16 VCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            VC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:   24 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRS 64
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Match: ADP-ribosylation (factor GTPase-activating protein 3 (Fragment) n=3 Tax=Boreoeutheria TaxID=1437010 RepID=B0QYV9_HUMAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.600e-10
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   16 VCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKS 138
            VC DCG    SW   TYG+ LC+ C+G HRSLG HL+ I+S
Sbjct:    2 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRS 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76615.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ADP-ribosylation4.200e-1890.24factor GTPase-activating protein, putative n=2 Tax... [more]
ARFGAP35.690e-1157.14(Fragment) n=1 Tax=Cervus elaphus hippelaphus TaxI... [more]
Arf-GAP5.970e-1152.27domain-containing protein n=2 Tax=Bionectria ochro... [more]
ADP-ribosylation6.160e-1152.27factor GTPase-activating protein-like protein n=1 ... [more]
Arf-GAP1.260e-1052.17domain-containing protein n=2 Tax=Neognathae TaxID... [more]
Arf-GAP1.290e-1052.17domain-containing protein n=1 Tax=Strix occidental... [more]
Arf-GAP2.120e-1056.10domain-containing protein n=2 Tax=Pavo cristatus T... [more]
ADP2.480e-1056.10ribosylation factor GTPase activating protein 3 n=... [more]
ADP2.540e-1056.10ribosylation factor GTPase activating protein 3 n=... [more]
ADP-ribosylation2.600e-1056.10factor GTPase-activating protein 3 (Fragment) n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76615contigH-canaliculatus_M_contigs76615:61..204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G861
PFAMsApoL,ArfGap
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K12492,ko:K12493,ko:K14480
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.99e-19
EggNOG OGsCOG5347@1|root,KOG0706@2759|Eukaryota
DescriptionGTPase activator activity
Cds size141
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.6120925-UTR-H-canaliculatus_M_contigs76615:60..631696854104.6120925-UTR-H-canaliculatus_M_contigs76615:60..63Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76615 61..63 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.6255717-CDS-H-canaliculatus_M_contigs76615:63..2041696854104.6255717-CDS-H-canaliculatus_M_contigs76615:63..204Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76615 64..204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76615.1.1prot_H-canaliculatus_M_contigs76615.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76615 64..204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76615.1.1

>prot_H-canaliculatus_M_contigs76615.1.1 ID=prot_H-canaliculatus_M_contigs76615.1.1|Name=mRNA_H-canaliculatus_M_contigs76615.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=47bp
MEQSVCMDCGQPETSWGGPTYGILLCVTCAGRHRSLGTHLTVIKSVS
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mRNA from alignment at H-canaliculatus_M_contigs76615:61..204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76615.1.1 ID=mRNA_H-canaliculatus_M_contigs76615.1.1|Name=mRNA_H-canaliculatus_M_contigs76615.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76615:61..204+ (Hapterophycus canaliculatus Oshoro7m male)
TTCATGGAACAAAGCGTGTGCATGGACTGTGGGCAGCCCGAGACTAGCTG
GGGCGGGCCTACCTACGGCATCTTGCTCTGCGTCACGTGTGCTGGCAGAC
ATCGCAGCCTTGGCACCCACCTCACGGTCATCAAGTCGGTGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76615:61..204+

>mRNA_H-canaliculatus_M_contigs76615.1.1 ID=mRNA_H-canaliculatus_M_contigs76615.1.1|Name=mRNA_H-canaliculatus_M_contigs76615.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76615:61..204+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAACAAAGCGTGTGCATGGACTGTGGGCAGCCCGAGACTAGCTGGGG
CGGGCCTACCTACGGCATCTTGCTCTGCGTCACGTGTGCTGGCAGACATC
GCAGCCTTGGCACCCACCTCACGGTCATCAAGTCGGTGAGC
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