mRNA_H-canaliculatus_M_contigs7660.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7660.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7660.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.640e-47
Identity = 90/123 (73.17%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            P RS A   +  +DLSFTYKDPDGD+IVFDKDSEL LA+RLCP SLEI AA     K++KP+ K DPE +L KIAARNLREY+GVPSMTP KL KTLA LKL P+RLVKQGLAPKVLLARMKA
Sbjct:   56 PVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAAL----KESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKA 174
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 4.320e-45
Identity = 89/123 (72.36%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            P RS A   +  +DLSFTYKDPDGD+IVFDKDSEL+LA+RLCP SLEI AA     K+ KP+ K DPE +L KIAARNLREY+GVPSMTP KL KTLA L+L P+RLVKQGLAPKVLLARMKA
Sbjct:   41 PVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAA----GKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKA 159
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 5.670e-45
Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            P RS A   +  +DLSFTYKDPDGD+IVFDKDSEL+LA+RLCP+SLEI AA     K+ KP  K DPEG+L KIAARNLREY+GVPSMT  KL KTLA LKL PRRLVKQGLAPK LLARMKA
Sbjct:   41 PVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAA----GKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKA 159
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.510e-44
Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            PARS A   +  +DLSFTYKDPDGD+IVFDK+SEL LALRLCP SLEI AA     K+ K +   D E KL KIAARNLREY+GVPSMTP KL KTLA LKL P+RLVKQGLAPKVLLARMKA
Sbjct:   59 PARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAA----GKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKA 177
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.530e-43
Identity = 87/123 (70.73%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            P RS A   +  +DLSFTYKDPDGD+IVFDKDSEL LA+RLCP SLEI A      K+++P+ K DPE +L KIAARNLREY+GVPSMT  KL KTLA LKL P+RLVKQGLAPKVLLARMKA
Sbjct:   59 PVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATL----KESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKA 177
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.990e-41
Identity = 86/123 (69.92%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            P RS     +  +DLSFTYKDPDGD+IVFDKDSEL+LALRLCP SLEI AA     K+ K +   D E  L KIAARNLREY+GVPSMTP KL KTLA LKL P+RLVKQGLAPK+LLARMKA
Sbjct:   68 PVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAA----GKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKA 186
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: PB1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.980e-40
Identity = 84/123 (68.29%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:    1 PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIAACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKA 369
            P RS     +  +DLSFTYKDPDGD+IVFDKDSEL LA+RLCP SLEI AA     K+ K +   D E +L KIAARNLREY+GVPSMTP KL KTLA LKL P+RLVKQGLAPK LL RMKA
Sbjct:   57 PVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAA----GKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKA 175
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.590e-11
Identity = 42/69 (60.87%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  178 KPSAK--VDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKAIDD 378
            KPS K  V+P   L K AARNL EYHGVPSMT   L KT+ LL+L P RLV QGLAPK LL    A  D
Sbjct:   38 KPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAAGD 106
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.550e-11
Identity = 41/69 (59.42%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  178 KPSAKVDPEGK--LNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPKVLLARMKAIDD 378
            KPS K   E    L K AARNLREYHGVPS+T   L KT+ LL+L P RLV QGLAPK  L    A DD
Sbjct:   44 KPSCKRMGESNPLLYKAAARNLREYHGVPSITVGGLEKTMVLLQLRPGRLVAQGLAPKQFLEGKSAADD 112
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 5.580e-11
Identity = 38/58 (65.52%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  178 KPSAKVDPEGK--LNKIAARNLREYHGVPSMTPAKLTKTLALLKLCPRRLVKQGLAPK 345
            KPS K+  E    L K AARNLREYHGVPSMT   L KT+ LL+L P RLV QGLAPK
Sbjct:   40 KPSCKLTGESNPLLYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPK 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7660.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
PB11.640e-4773.17domain-containing protein n=1 Tax=Ectocarpus silic... [more]
PB14.320e-4572.36domain-containing protein n=1 Tax=Ectocarpus silic... [more]
PB15.670e-4573.17domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PB16.510e-4472.36domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PB11.530e-4370.73domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PB11.990e-4169.92domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
PB11.980e-4068.29domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized2.590e-1160.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.550e-1159.42protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
Uncharacterized5.580e-1165.52protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7660contigH-canaliculatus_M_contigs7660:28..1354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.4118028-CDS-H-canaliculatus_M_contigs7660:29..2361696854104.4118028-CDS-H-canaliculatus_M_contigs7660:29..236Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7660 30..236 -
1696854104.4241083-CDS-H-canaliculatus_M_contigs7660:1177..13541696854104.4241083-CDS-H-canaliculatus_M_contigs7660:1177..1354Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7660 1178..1354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7660.1.1prot_H-canaliculatus_M_contigs7660.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7660 30..1354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7660.1.1

>prot_H-canaliculatus_M_contigs7660.1.1 ID=prot_H-canaliculatus_M_contigs7660.1.1|Name=mRNA_H-canaliculatus_M_contigs7660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=128bp
PARSGAEGGSTKSDLSFTYKDPDGDNIVFDKDSELHLALRLCPESLEIIA
ACEDDHKDTKPSAKVDPEGKLNKIAARNLREYHGVPSMTPAKLTKTLALL
KLCPRRLVKQGLAPKVLLARMKAIDDDK
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mRNA from alignment at H-canaliculatus_M_contigs7660:28..1354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7660.1.1 ID=mRNA_H-canaliculatus_M_contigs7660.1.1|Name=mRNA_H-canaliculatus_M_contigs7660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7660:28..1354- (Hapterophycus canaliculatus Oshoro7m male)
CCCGCCCGCTCCGGCGCCGAAGGAGGCTCTACGAAGAGCGACCTCTCCTT
CACTTACAAGGATCCTGACGGCGACAACATCGTGTTCGACAAGGACTCCG
AACTCCACCTGGCCCTGCGCCTATGCCCCGAGTCGCTGGAGATTATCGCC
GCCTGCGAGGACGACCACAAGGATACGGTAAGAAAAGCACCGGATCGGGG
AAAAGTCTTGTAGTCCTCGTTGATGATCGTGTTGATGATCGTCCGCTCTG
GAGGCGTAGCAATGTATATAGGACGCGACACCGCGGCGGCTTGTTTCGTG
TCACCAGGACGAAGTGTCGACGGAGATTGGTTTTGAGTCTATGAGGGCAT
CCGTGGTACGATTTCCGTCTTCGTAGCGCACGTTGATTCGTTCAGAGCCA
TGTTATTGACAAATAAGGGACACATCTGGGGTCCCGTACCTCTGAAAGCA
AAGTCTTCAACTTGTTCGAGTAAAACTTGTGTACTGTATTTGAACTGAGC
CTCAAGAGAGGTATCTCCCGTTGGTGTTGTACCCTGTATCCTAGAAGAGT
GCGTGATCAAGTAGTCGAAGCCGGCATCTTGGATCTCTTCCCCCTGCTGT
GCACTTTCTCCTCCGCCTCTCGGATGGCGCTACGATTTATCCTCGTAAAA
TCTGTAGACTGCTCTTCTCACGTCTGGGAAGGGTCCTGTGGCCATCCCTG
AGATCTTGTCCGGCCGCGTGCCGATGTGTTGTAACGTTTCCTCTCTCGAG
AGTCACTTCAATCGCTCCCGTTGTCGTACTTTAAGCTTCCACTGATTGAA
TCTGTGGAAAAGCGACGTTCCTTCCGTCGACGACTGCCACGGGAGCGGCG
GTGGTGGCCTAGAAACACGGACGATTACAAGCGTTGCCATGCGCGATCGG
AATTCGGGAATTGCGGCTTCTTTTTCCGCCTGTCGCCCCGTTCGTCTGAC
CCACGTCCACTCAACCCGACGAAGTCTCTCCCTCTGCGCGCTACAGCGTT
CTACTTGAAACCTGATCCGAAAATTTAAACGTGACAACACCGTCTGTACC
CACTTTCCTCCCTCGTACTTGTTGCCCGACCCCGTTTCCGCCTCCCTGCA
TCCTTCCTCTTGCCTCAGAAACCCTCCGCCAAGGTCGACCCCGAGGGAAA
GCTGAACAAGATCGCCGCCCGCAACCTCCGCGAATACCATGGCGTGCCCT
CCATGACCCCGGCTAAGCTCACCAAGACCCTGGCGCTTCTCAAGCTTTGC
CCTCGCCGCCTCGTGAAGCAGGGTCTGGCTCCCAAGGTGCTGCTGGCCCG
GATGAAAGCAATCGACGACGACAAAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7660:28..1354-

>mRNA_H-canaliculatus_M_contigs7660.1.1 ID=mRNA_H-canaliculatus_M_contigs7660.1.1|Name=mRNA_H-canaliculatus_M_contigs7660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=384bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7660:28..1354- (Hapterophycus canaliculatus Oshoro7m male)
CCCGCCCGCTCCGGCGCCGAAGGAGGCTCTACGAAGAGCGACCTCTCCTT
CACTTACAAGGATCCTGACGGCGACAACATCGTGTTCGACAAGGACTCCG
AACTCCACCTGGCCCTGCGCCTATGCCCCGAGTCGCTGGAGATTATCGCC
GCCTGCGAGGACGACCACAAGGATACGAAACCCTCCGCCAAGGTCGACCC
CGAGGGAAAGCTGAACAAGATCGCCGCCCGCAACCTCCGCGAATACCATG
GCGTGCCCTCCATGACCCCGGCTAAGCTCACCAAGACCCTGGCGCTTCTC
AAGCTTTGCCCTCGCCGCCTCGTGAAGCAGGGTCTGGCTCCCAAGGTGCT
GCTGGCCCGGATGAAAGCAATCGACGACGACAAA
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