mRNA_H-canaliculatus_M_contigs76561.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76561.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76561.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 9.820e-45
Identity = 77/122 (63.11%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   85 KRRRS-LMLRERRPWALYIKPMLGDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEE 447
            KR RS L+ RERRP+  YIKPML D TF  RFRM++DDF  L + LRP LQ+  K G LRNGA+PVEYQ+ +TLRWLAGGS+YE MDGHVI+RS AY     VI A+N C  L+C+WPEGE+
Sbjct:   43 KRNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED 164          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.470e-43
Identity = 71/134 (52.99%), Postives = 102/134 (76.12%), Query Frame = 1
Query:   91 RRSLMLRERRPWALYIKPMLGDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKSADAFKTRSSFG 492
            R + + RERR +  Y++PM+ D+TF+ RFRM + DFM LA++LRP LQR+ KMGALRNGA+PVE+QL +TLR+LAGGS++E MD +VI++S AY    RVI+A+N    L+C+WP G++A   A+ ++ RS+ G
Sbjct:   46 RGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNG 179          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.000e-42
Identity = 72/134 (53.73%), Postives = 95/134 (70.90%), Query Frame = 1
Query:   91 RRSLMLRERRPWALYIKPMLGDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKSADAFKTRSSFG 492
            R   + RERR W  Y KPM+ D TF+ RFRM + +F  LA++LRP L+R  +MGALRNG +PVE+QL + LR+LAGGS++E MDG+VI+RS AY    RVI+A+N    LDC WPEGE+AL     ++ RS+ G
Sbjct:   42 RDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNG 175          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.620e-41
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 1
Query:   85 KRRRS-LMLRERRPWALYIKPMLGDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPE 438
            KR RS L+ RERRP+  +IKP+L D TF  RFRM++DDF  L + LRP L +  KMG LR GA+PVEYQ+ +TLRWLAGGS+YE MDGHVI+RS AY     VI A+N C  L+C+WPE
Sbjct:   43 KRNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE 161          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: DDE (Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.350e-36
Identity = 66/116 (56.90%), Postives = 84/116 (72.41%), Query Frame = 1
Query:   82 VKRRRSLMLRERRPWALYIKPMLGDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAA----FRVIEAVNDCEG 417
            ++ R +L+ R RRP+  YIKPML D TF  RFRM++DDF  L + LRP LQ+  KMG LRNGA+PVEYQ+ +TLRWLAGGS YE MDGHVI+RS AY A     +R++  + +C G
Sbjct:   43 MRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMAWMMNCPG 158          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.960e-31
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1
Query:  247 MGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKSADAFKTRSSFG 492
            MG LRNGA+PVEYQ+ +TLRWLAGGS+YE MDGHVI+RS AY     VI A+N C  L+C+WPEGE+A  +A+ F+ RSS+G
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSSYG 82          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: DDE (Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.200e-31
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 1
Query:  199 MALAELLRPVLQREPKMGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKSADAFKTRSSF 489
            + L + LRP LQ+  +MG LRNGA+PVE Q+ +TLRWLAGGS+YE MDGHVI+RS AY     VI A+N C  L+C+WPEGE+A ++A+ F+ RSS 
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSM 167          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.520e-29
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  247 MGALRNGAVPVEYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKSADAFKTRSSF 489
            MG LRNGA+PVE Q+ +TLRWLAGGS+YE MDGHVI+RS AY     VI A+N C  L+C+WPEGE+A ++A+ F+ RSS 
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSM 81          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1XZM0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.790e-10
Identity = 39/133 (29.32%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  103 MLRERRPWALYIKPMLGDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPV--EYQLGLTLRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKS-ADAFKTRSSFG 492
            ++ +R  W  + + ++  + F+  +RM  + F  L E L   +  +  M   R  A PV  E++L +TLRWL+GGS++ES+    + +S  Y   +     +N+C  L  R+P+ EE +K+ +  F++ S+ G
Sbjct:   70 IIEQRASWQEHRENLIQRNIFRPMYRMTPESFDRLIEKLGDDINVDADMAYRRTQAGPVIAEWRLAMTLRWLSGGSLWESVAWIRLHKSTFYNIVWETCGIINECGPLAFRFPQTEEEVKALSSGFESISTEG 202          
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.990e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1
Query:  337 MDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEALKSADAFKTRSSF 489
            MD HVI+RS AY     VI A+N C  ++C+WPEGE+A ++A+ F+ RSS 
Sbjct:    1 MDDHVIARSTAYHETSTVINALNACSEVNCKWPEGEDAARAAELFRNRSSI 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76561.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized9.820e-4563.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DDE7.470e-4352.99Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
DDE5.000e-4253.73Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
DDE2.620e-4160.50Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
DDE6.350e-3656.90Tnp4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
Uncharacterized1.960e-3163.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DDE3.200e-3157.73Tnp4 domain-containing protein n=3 Tax=Ectocarpus ... [more]
Uncharacterized3.520e-2961.73protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical5.790e-1029.32protein n=2 Tax=Grammatophora oceanica TaxID=21045... [more]
Integrase1.990e-850.98catalytic domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76561contigH-canaliculatus_M_contigs76561:31..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI46469
PFAMsDDE_Tnp_4
Model size492
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.07e-11
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Descriptionnuclease activity
Cds size492
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.233929-CDS-H-canaliculatus_M_contigs76561:30..5221696854104.233929-CDS-H-canaliculatus_M_contigs76561:30..522Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76561 31..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76561.1.1prot_H-canaliculatus_M_contigs76561.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76561 31..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76561.1.1

>prot_H-canaliculatus_M_contigs76561.1.1 ID=prot_H-canaliculatus_M_contigs76561.1.1|Name=mRNA_H-canaliculatus_M_contigs76561.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=164bp
MQRLLRLLDVLLLIEAIEAIEELEKLRVKRRRSLMLRERRPWALYIKPML
GDDTFKGRFRMQHDDFMALAELLRPVLQREPKMGALRNGAVPVEYQLGLT
LRWLAGGSMYESMDGHVISRSAAYQAAFRVIEAVNDCEGLDCRWPEGEEA
LKSADAFKTRSSFG
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mRNA from alignment at H-canaliculatus_M_contigs76561:31..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76561.1.1 ID=mRNA_H-canaliculatus_M_contigs76561.1.1|Name=mRNA_H-canaliculatus_M_contigs76561.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=492bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76561:31..522+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGAGGCTCTTGCGTCTCCTCGACGTTCTCTTACTCATCGAGGCCAT CGAGGCCATCGAGGAGTTAGAAAAACTCAGGGTGAAGCGTCGCAGGTCGT TGATGCTGCGCGAGAGGCGCCCCTGGGCTCTGTACATCAAGCCCATGCTC GGCGACGACACGTTCAAAGGGAGGTTCCGCATGCAGCACGATGACTTCAT GGCCCTCGCGGAGCTCCTGCGTCCTGTTTTACAGCGGGAGCCGAAAATGG GAGCTTTGCGCAACGGGGCGGTGCCGGTAGAGTATCAGCTTGGCTTGACT CTACGTTGGCTGGCAGGAGGTTCCATGTACGAGAGCATGGACGGCCATGT CATCTCCAGGAGTGCAGCCTACCAGGCTGCGTTTCGCGTGATCGAGGCGG TGAATGACTGCGAGGGCCTCGACTGCAGATGGCCGGAGGGGGAGGAGGCT TTGAAGTCTGCGGACGCGTTCAAGACTCGAAGCTCATTCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76561:31..522+

>mRNA_H-canaliculatus_M_contigs76561.1.1 ID=mRNA_H-canaliculatus_M_contigs76561.1.1|Name=mRNA_H-canaliculatus_M_contigs76561.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76561:31..522+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGAGGCTCTTGCGTCTCCTCGACGTTCTCTTACTCATCGAGGCCAT
CGAGGCCATCGAGGAGTTAGAAAAACTCAGGGTGAAGCGTCGCAGGTCGT
TGATGCTGCGCGAGAGGCGCCCCTGGGCTCTGTACATCAAGCCCATGCTC
GGCGACGACACGTTCAAAGGGAGGTTCCGCATGCAGCACGATGACTTCAT
GGCCCTCGCGGAGCTCCTGCGTCCTGTTTTACAGCGGGAGCCGAAAATGG
GAGCTTTGCGCAACGGGGCGGTGCCGGTAGAGTATCAGCTTGGCTTGACT
CTACGTTGGCTGGCAGGAGGTTCCATGTACGAGAGCATGGACGGCCATGT
CATCTCCAGGAGTGCAGCCTACCAGGCTGCGTTTCGCGTGATCGAGGCGG
TGAATGACTGCGAGGGCCTCGACTGCAGATGGCCGGAGGGGGAGGAGGCT
TTGAAGTCTGCGGACGCGTTCAAGACTCGAAGCTCATTCGGG
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