mRNA_H-canaliculatus_M_contigs76555.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76555.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76555.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.850e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:   13 QAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQ 168
            QAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQ
Sbjct: 1109 QAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQ 1160
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BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 8.120e-25
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:   13 QAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQ 168
            QAITVD WLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQ
Sbjct:   23 QAITVDSWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQ 74
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BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UTW0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.740e-9
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   19 ITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDV--SDNGRDLIQ 168
            +T+D WL FR   +AATLVK+LR  MER+LL+KI +PQED+  S+ G+ LI+
Sbjct:  202 VTIDDWLKFRIGAKAATLVKHLRAQMERMLLKKILNPQEDITKSEEGKALIE 253
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BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUP8_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.390e-8
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 QAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDNGRDLIQV 171
            + +TVD WLHFRAAR+ A L+++LR+  E +LL +I +P  +VS  GR+L+ V
Sbjct:  439 EVVTVDGWLHFRAARKTAALLRHLRLQTEAILLEQIANPDGEVSGKGRNLVMV 491
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BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZV4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.420e-6
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   22 TVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDV--SDNGRDLIQ 168
            +VD WL F+   + ATL+KYLR  MERLL +KI  P EDV  S+ G+ LIQ
Sbjct: 1906 SVDGWLKFKIDAKPATLIKYLRGKMERLLFQKIVSPHEDVIESEEGKALIQ 1956
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BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1GYY0_HEMAN)

HSP 1 Score: 49.3 bits (116), Expect = 2.430e-5
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   10 SQAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSD 147
            S  ITVD WL   AA + A LVK LR H++R+LLRKI +P E +S+
Sbjct:  103 SSRITVDGWLGLDAAPKTAVLVKQLREHLDRMLLRKIDNPNEKMSE 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76555.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized7.850e-25100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.120e-2598.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical4.740e-955.77protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Hypothetical1.390e-849.06protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Uncharacterized5.420e-654.90protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
Hypothetical2.430e-554.35protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76555contigH-canaliculatus_M_contigs76555:71..262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1J2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K13026
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-25
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size192
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.1958861-CDS-H-canaliculatus_M_contigs76555:70..2621696854104.1958861-CDS-H-canaliculatus_M_contigs76555:70..262Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76555 71..262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76555.1.1prot_H-canaliculatus_M_contigs76555.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76555 71..262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76555.1.1

>prot_H-canaliculatus_M_contigs76555.1.1 ID=prot_H-canaliculatus_M_contigs76555.1.1|Name=mRNA_H-canaliculatus_M_contigs76555.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=64bp
LKHSQAITVDKWLHFRAARRAATLVKYLRVHMERLLLRKITHPQEDVSDN
GRDLIQVGAGGALL
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mRNA from alignment at H-canaliculatus_M_contigs76555:71..262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76555.1.1 ID=mRNA_H-canaliculatus_M_contigs76555.1.1|Name=mRNA_H-canaliculatus_M_contigs76555.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76555:71..262+ (Hapterophycus canaliculatus Oshoro7m male)
TTGAAACACTCCCAGGCGATCACGGTGGACAAGTGGCTCCACTTTCGAGC
GGCGCGCAGGGCCGCCACGCTGGTCAAGTACCTCCGCGTGCACATGGAGC
GGCTCTTGCTCCGGAAGATCACGCACCCGCAGGAGGACGTCTCGGACAAC
GGTCGCGATCTCATTCAGGTTGGTGCAGGCGGTGCGTTGTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76555:71..262+

>mRNA_H-canaliculatus_M_contigs76555.1.1 ID=mRNA_H-canaliculatus_M_contigs76555.1.1|Name=mRNA_H-canaliculatus_M_contigs76555.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=192bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76555:71..262+ (Hapterophycus canaliculatus Oshoro7m male)
TTGAAACACTCCCAGGCGATCACGGTGGACAAGTGGCTCCACTTTCGAGC
GGCGCGCAGGGCCGCCACGCTGGTCAAGTACCTCCGCGTGCACATGGAGC
GGCTCTTGCTCCGGAAGATCACGCACCCGCAGGAGGACGTCTCGGACAAC
GGTCGCGATCTCATTCAGGTTGGTGCAGGCGGTGCGTTGTTG
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