mRNA_H-canaliculatus_M_contigs76543.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76543.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76543.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint (domain-containing protein n=1 Tax=Maritalea mobilis TaxID=483324 RepID=UPI001C975B48)

HSP 1 Score: 309 bits (792), Expect = 6.360e-104
Identity = 146/174 (83.91%), Postives = 157/174 (90.23%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVLAA 522
            FS+DGLRIDILQYDP DSIGFIGGFDFY+DP+N DE HFSYIG+DGNTY+G IRAMDGGEKDF DPFQPITIICFADGTLI TP GPVPVETLRPGDMV TRDSG LPLRWVGRR LSAD+LR QP L PI VA+DTFGPG P+ DLVLSPNHR+M+SDWRVEMLFG+ DVLAA
Sbjct:   34 FSQDGLRIDILQYDPDDSIGFIGGFDFYVDPDNVDEIHFSYIGADGNTYSGVIRAMDGGEKDFTDPFQPITIICFADGTLIDTPEGPVPVETLRPGDMVMTRDSGALPLRWVGRRELSADVLRTQPSLCPIEVARDTFGPGQPSRDLVLSPNHRLMLSDWRVEMLFGEFDVLAA 207          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint (domain-containing protein n=1 Tax=Gymnodinialimonas ceratoperidinii TaxID=2856823 RepID=A0A8F6TTE3_9RHOB)

HSP 1 Score: 254 bits (650), Expect = 7.150e-82
Identity = 121/174 (69.54%), Postives = 139/174 (79.89%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVLAA 522
            FSE+ L+IDI  YDP D+I   G FDFY+DP+N DEF FSY GSDG  YTGYI+A DGGEKDF DPFQPI IICFADGTLI TP+GPV VETLRPGD+V TRDSGPLPLRWVGRR LSA  L  QP+L P+ VA+ T+G   P+ DLVLSPNHRV+++DWR+E LFG  + LAA
Sbjct:   63 FSENNLQIDIHDYDPMDTISLPGAFDFYVDPDNPDEFTFSYYGSDGGVYTGYIKAKDGGEKDFTDPFQPINIICFADGTLIDTPSGPVAVETLRPGDLVLTRDSGPLPLRWVGRRELSARELSEQPELRPLKVARGTYGENRPSRDLVLSPNHRVLLNDWRIEFLFGTREALAA 236          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint_2 (domain-containing protein n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A2E2F2B9_9RHOB)

HSP 1 Score: 218 bits (556), Expect = 9.570e-68
Identity = 100/174 (57.47%), Postives = 125/174 (71.84%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVLAA 522
            F +D LRIDI  YDPSDSI  +G    ++DPNN DE+ F+Y+G+DG  +TG+IRA DGGEKDF DPFQPI  +CF DGTLI+TP G VP+E L+ GD+V TRDSG +P+RW+GRR +    L     L PI V     G GLP  DL+LSPNHRV+++DWR E LFG+ +VL A
Sbjct:   75 FDQDDLRIDIHHYDPSDSISLLGALSTWVDPNNPDEYQFTYLGADGEVHTGFIRAKDGGEKDFTDPFQPIQFMCFGDGTLIATPKGEVPIEMLQVGDLVLTRDSGAMPIRWIGRRHMDGLALARAQYLRPIAVRAGALGDGLPVQDLILSPNHRVLLTDWRAEYLFGEAEVLVA 248          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint_2 (domain-containing protein n=1 Tax=Maritimibacter sp. 55A14 TaxID=2174844 RepID=A0A2U2CK65_9RHOB)

HSP 1 Score: 172 bits (435), Expect = 1.300e-49
Identity = 89/180 (49.44%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPIT------IICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVLAA 522
            F++DGLRID+  YDPSD I FIG  D  IDP + DE  F++ G  G   TG I   DGGEKD      PI       ++CFA G LI T  G   VE L  GDM+ TRD+G  PLRW+GRR L    L    DL P+ V +D FGPG P  DL LSP HR+ + DWR E+LFG+ ++L A
Sbjct:   64 FAQDGLRIDLHHYDPSDEIQFIGLIDAQIDPAHPDELAFTFAGPGGEVLTGTIFVKDGGEKDLLQDPPPIIYDSVFQVVCFAGGALIETDGGHRRVEDLAVGDMLRTRDNGMQPLRWIGRRDLDRATLDACSDLRPVRVRRDAFGPGRPFADLCLSPQHRIFLDDWRAELLFGEPELLVA 243          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint (domain-containing protein n=2 Tax=Sulfitobacter guttiformis TaxID=74349 RepID=A0A420DTV9_9RHOB)

HSP 1 Score: 171 bits (434), Expect = 1.750e-49
Identity = 88/172 (51.16%), Postives = 112/172 (65.12%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVL 516
            FS++GLRIDI  YDP+D I   G F+ Y+DP+N DE+ F YIG+DG TY+  I A DGGEKDF     PI IICFA GT I T  G   +ETL  GD++ T D+G +PL+W+GR  + A  LR   +L P+ V    FG G P  D+VLSPNHRV+I     E+ FG+ +VL
Sbjct:   72 FSQNGLRIDIHHYDPTDIINLQGAFNRYVDPDNPDEYTFDYIGADGRTYSATIYAKDGGEKDFTSDPSPI-IICFAKGTEIETSEGAQAIETLCVGDLIRTLDAGFVPLKWLGRTDMGARELRRWENLRPVRVRSGAFGQGRPEKDVVLSPNHRVLIGGKWAELYFGEAEVL 242          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint_2 (domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7Y2NGX2_9RHOB)

HSP 1 Score: 171 bits (433), Expect = 2.070e-49
Identity = 81/169 (47.93%), Postives = 111/169 (65.68%), Query Frame = 1
Query:   16 LRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVLAA 522
            L ID+  Y+ +D+I  +G  +  I+P N DE+ F Y+G+DGNTY+G++RA D GE+D      PI IICFA GT+I T  GP P+E L PGD+V T+++G  P+RW+G R L A  L L P L PI +     G   P  DL++SP HR+ + DWR E+LFG+ +VLAA
Sbjct:   69 LHIDVRDYNETDTISLLGAQNGTIEPGNLDEYQFDYVGADGNTYSGFVRAKDVGERDLTTDPPPI-IICFAAGTIIDTDLGPTPIEALSPGDLVVTQNNGLQPIRWIGSRRLDARELALAPTLRPIRIRAGALGADRPFRDLLVSPEHRIKLGDWRAELLFGEAEVLAA 236          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint_2 (domain-containing protein n=1 Tax=Sulfitobacter sp. JL08 TaxID=2070369 RepID=A0A345R8E0_9RHOB)

HSP 1 Score: 171 bits (432), Expect = 2.920e-49
Identity = 80/172 (46.51%), Postives = 112/172 (65.12%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVL 516
            F    L IDI  YDP+DS+     F+ ++DP   DE++F YIG++G T+ G++RA D GEKDF D   PI +ICFA GT+I T  GP PVE L  GD+V TRD+   P+RW+GRR L +  L  +P+LAP+ +     G GLP  DL +SP HR+++  W+ E+ FG+ ++L
Sbjct:   65 FQSYSLHIDINDYDPTDSVVLNNAFNRHVDPGKEDEYNFEYIGANGATFNGFLRAKDKGEKDFTDQPPPI-VICFAKGTIIDTTLGPTPVECLTEGDLVRTRDNDDQPIRWIGRRRLDSLELARRPNLAPVRIHTGALGRGLPHVDLTVSPQHRILVEGWQAELHFGESEIL 235          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint (domain-containing protein n=1 Tax=Roseivivax lentus TaxID=633194 RepID=A0A1N7JV93_9RHOB)

HSP 1 Score: 167 bits (423), Expect = 9.000e-48
Identity = 86/167 (51.50%), Postives = 106/167 (63.47%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFG 501
            FS DGL IDI  YDPSD I  +G FD +++PNN DE+ FSY G DG TYTGY+RA D  E+DF     PI IICFA  T + T  G    + ++P D +ET D+G  P+RWVGR+ LSA  L   PD  P+ V K   GP +P   L LSP HRV++   R+EMLFG
Sbjct:   63 FSGDGLHIDIKDYDPSDQISLLGAFDTFVEPNNVDEYQFSYTGDDGVTYTGYVRAKDKDERDFTQDPAPI-IICFAGETELKTTLGWKRADQIKPWDCLETADAGFQPVRWVGRKRLSAQDLASHPDQRPVIVEKGALGPNMPRRRLRLSPQHRVLMRGARLEMLFG 228          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint (domain-containing protein n=1 Tax=Rhodobacteraceae bacterium R_SAG10 TaxID=2719012 RepID=A0A7X6FX32_9RHOB)

HSP 1 Score: 164 bits (415), Expect = 1.050e-46
Identity = 85/174 (48.85%), Postives = 113/174 (64.94%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDF-ADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVLA 519
            F+  GL IDI  YDP+D++  +  F   +DP N DE++F YIG++G T+ GYIRA D GEKD  ADP  P+ IICFA GT+I T  GPV VE+L  GD+VETRD G  P+RW+G+R L    L   P L P+     + G  LP  DL +SP HR+ ++ W+ E+ FG+ +VLA
Sbjct:   65 FTTYGLHIDIRGYDPTDTVSLLSAFGTSVDPGNEDEYNFQYIGANGATFDGYIRAKDNGEKDCTADP-APV-IICFAQGTVIHTDLGPVAVESLALGDLVETRDRGVQPIRWIGKRVLDTLDLARYPQLRPVCFKAGSLGRDLPYKDLTVSPQHRMRLTGWQAELHFGETEVLA 236          
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Match: Hint_2 (domain-containing protein n=1 Tax=Planktotalea frisia TaxID=696762 RepID=A0A1L9NT64_9RHOB)

HSP 1 Score: 157 bits (398), Expect = 3.480e-44
Identity = 84/172 (48.84%), Postives = 107/172 (62.21%), Query Frame = 1
Query:    1 FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYTGYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVETRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLSPNHRVMISDWRVEMLFGDCDVL 516
            FSE  L+I I  YD SD I   G F+ Y+DP++ DEF F Y G  G  YTGY+ A DGGEKDF     PI IICFA GT I T NG   +ETL+  D+V T D+G +P+ W+G+  ++   LR    L P+ V    FG   P+ D+VLSPNHRV+IS    E+LFG+ +VL
Sbjct:   64 FSEPDLQITIKNYDSSDKINLDGAFNQYVDPDDVDEFQFEYYGVGGTAYTGYVEAKDGGEKDFTANPAPI-IICFAKGTDIETANGIKNIETLKVDDLVWTSDAGLVPILWLGQSEINGLELRRWEHLRPVRVKAHAFGQDSPSKDVVLSPNHRVLISGPNSELLFGESEVL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76543.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hint6.360e-10483.91domain-containing protein n=1 Tax=Maritalea mobili... [more]
Hint7.150e-8269.54domain-containing protein n=1 Tax=Gymnodinialimona... [more]
Hint_29.570e-6857.47domain-containing protein n=3 Tax=Rhodobacterales ... [more]
Hint_21.300e-4949.44domain-containing protein n=1 Tax=Maritimibacter s... [more]
Hint1.750e-4951.16domain-containing protein n=2 Tax=Sulfitobacter gu... [more]
Hint_22.070e-4947.93domain-containing protein n=1 Tax=Rhodobacteraceae... [more]
Hint_22.920e-4946.51domain-containing protein n=1 Tax=Sulfitobacter sp... [more]
Hint9.000e-4851.50domain-containing protein n=1 Tax=Roseivivax lentu... [more]
Hint1.050e-4648.85domain-containing protein n=1 Tax=Rhodobacteraceae... [more]
Hint_23.480e-4448.84domain-containing protein n=1 Tax=Planktotalea fri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76543contigH-canaliculatus_M_contigs76543:2..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1443111.JASG01000004_gene382
PFAMsHemolysinCabind,Hint_2
Model size522
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.87e-50
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1RJHS@1224|Proteobacteria,2U5K6@28211|Alphaproteobacteria,3ZYK2@60136|Sulfitobacter
DescriptionHint domain
Cds size522
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.112965-CDS-H-canaliculatus_M_contigs76543:1..5231696854104.112965-CDS-H-canaliculatus_M_contigs76543:1..523Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76543 2..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76543.1.1prot_H-canaliculatus_M_contigs76543.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76543 2..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76543.1.1

>prot_H-canaliculatus_M_contigs76543.1.1 ID=prot_H-canaliculatus_M_contigs76543.1.1|Name=mRNA_H-canaliculatus_M_contigs76543.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=174bp
FSEDGLRIDILQYDPSDSIGFIGGFDFYIDPNNTDEFHFSYIGSDGNTYT
GYIRAMDGGEKDFADPFQPITIICFADGTLISTPNGPVPVETLRPGDMVE
TRDSGPLPLRWVGRRALSADLLRLQPDLAPINVAKDTFGPGLPTGDLVLS
PNHRVMISDWRVEMLFGDCDVLAA
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mRNA from alignment at H-canaliculatus_M_contigs76543:2..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76543.1.1 ID=mRNA_H-canaliculatus_M_contigs76543.1.1|Name=mRNA_H-canaliculatus_M_contigs76543.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=522bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76543:2..523+ (Hapterophycus canaliculatus Oshoro7m male)
TTCTCGGAAGACGGGTTGCGGATCGACATCCTGCAATATGACCCGAGCGA TTCCATCGGCTTCATTGGTGGCTTCGACTTCTACATCGACCCGAACAATA CAGACGAATTCCACTTCAGCTACATCGGATCAGACGGAAATACCTACACT GGCTACATTCGGGCGATGGATGGCGGTGAAAAGGATTTCGCCGATCCATT CCAGCCGATCACGATCATATGCTTTGCCGATGGCACGTTGATCTCCACTC CCAACGGCCCCGTACCCGTCGAGACCCTGCGCCCCGGCGACATGGTGGAG ACGCGCGATTCAGGACCGTTGCCGCTGCGGTGGGTGGGGCGGCGCGCGTT GTCCGCCGATTTGTTGCGCCTTCAGCCGGACTTGGCCCCGATCAATGTTG CCAAAGATACCTTCGGCCCCGGCCTTCCCACAGGCGATCTGGTGCTGTCG CCCAACCACCGCGTCATGATAAGCGATTGGCGCGTCGAGATGTTGTTTGG CGATTGCGACGTGTTGGCCGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76543:2..523+

>mRNA_H-canaliculatus_M_contigs76543.1.1 ID=mRNA_H-canaliculatus_M_contigs76543.1.1|Name=mRNA_H-canaliculatus_M_contigs76543.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=522bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76543:2..523+ (Hapterophycus canaliculatus Oshoro7m male)
TTCTCGGAAGACGGGTTGCGGATCGACATCCTGCAATATGACCCGAGCGA
TTCCATCGGCTTCATTGGTGGCTTCGACTTCTACATCGACCCGAACAATA
CAGACGAATTCCACTTCAGCTACATCGGATCAGACGGAAATACCTACACT
GGCTACATTCGGGCGATGGATGGCGGTGAAAAGGATTTCGCCGATCCATT
CCAGCCGATCACGATCATATGCTTTGCCGATGGCACGTTGATCTCCACTC
CCAACGGCCCCGTACCCGTCGAGACCCTGCGCCCCGGCGACATGGTGGAG
ACGCGCGATTCAGGACCGTTGCCGCTGCGGTGGGTGGGGCGGCGCGCGTT
GTCCGCCGATTTGTTGCGCCTTCAGCCGGACTTGGCCCCGATCAATGTTG
CCAAAGATACCTTCGGCCCCGGCCTTCCCACAGGCGATCTGGTGCTGTCG
CCCAACCACCGCGTCATGATAAGCGATTGGCGCGTCGAGATGTTGTTTGG
CGATTGCGACGTGTTGGCCGCT
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