mRNA_H-canaliculatus_M_contigs76533.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76533.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76533.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: UPF0029 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE6_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.230e-14
Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = 1
Query:   31 RVVEKHPKARHNCWAWRGLGDDHRFSDDGEPG 126
            RV+++HPKARH+CWAWRGLGDDHRFSDDGEPG
Sbjct:   61 RVLKEHPKARHSCWAWRGLGDDHRFSDDGEPG 92          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: UPF0029 (domain-containing protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / KCTC 2777 / LMG 1558 / NBRC 3245 / NCIMB 13370) TaxID=767434 RepID=H8L4N1_FRAAD)

HSP 1 Score: 50.1 bits (118), Expect = 4.650e-6
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1
Query:   46 HPKARHNCWAWRGLGDDHRFSDDGEPG 126
            H  ARH+CWAWR +G+D+RFSDDGEPG
Sbjct:   44 HADARHHCWAWR-MGEDYRFSDDGEPG 69          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family member YigZ n=1 Tax=Pseudomonas carbonaria TaxID=2762745 RepID=A0A7U7IBJ9_9PSED)

HSP 1 Score: 48.5 bits (114), Expect = 1.680e-5
Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 1
Query:    1 TPCKNICWFPRVVEKH--PKARHNCWAWRGLGDDHRFSDDGEPG 126
            TP  +       +  H  P A HNCWAW+ LGD +RFSDDGEPG
Sbjct:   25 TPIASAAEAQAFIAAHSDPGASHNCWAWK-LGDQYRFSDDGEPG 67          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family protein n=1 Tax=Castellaniella caeni TaxID=266123 RepID=UPI000830E309)

HSP 1 Score: 48.1 bits (113), Expect = 2.430e-5
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 1
Query:   43 KHPKARHNCWAWRGLGDDHRFSDDGEPG 126
            + P+A HNCWAW+ +GD +RFSDDGEPG
Sbjct:   41 RDPQATHNCWAWQ-VGDQYRFSDDGEPG 67          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Putative (YigZ family protein n=1 Tax=Angulomicrobium tetraedrale TaxID=217068 RepID=A0A839Z4R3_9HYPH)

HSP 1 Score: 47.8 bits (112), Expect = 3.280e-5
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1
Query:   34 VVEKHPKARHNCWAWRGLGDDHRFSDDGEPG 126
              +  P A HNCWAWR +G ++RFSDDGEPG
Sbjct:   40 AAQSDPGANHNCWAWR-VGQNYRFSDDGEPG 69          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family protein n=3 Tax=Pseudomonas viridiflava TaxID=33069 RepID=UPI000F03700B)

HSP 1 Score: 47.4 bits (111), Expect = 4.590e-5
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query:   37 VEKH--PKARHNCWAWRGLGDDHRFSDDGEPG 126
            +E+H  P A HNCWAW+ +G  +RFSDDGEPG
Sbjct:   37 IERHSDPAATHNCWAWK-VGQQYRFSDDGEPG 67          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Sinorhizobium medicae TaxID=110321 RepID=A6U5M1_SINMW)

HSP 1 Score: 47.0 bits (110), Expect = 6.150e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:   49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
            P A HNCWAWR +G ++RFSDDGEPG
Sbjct:   42 PAANHNCWAWR-VGQNYRFSDDGEPG 66          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001EDCBD2C)

HSP 1 Score: 47.0 bits (110), Expect = 6.150e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:   49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
            P A HNCWAW+ +GD +RFSDDGEPG
Sbjct:   43 PGASHNCWAWK-VGDQYRFSDDGEPG 67          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Thymidylate (synthase n=62 Tax=Gammaproteobacteria TaxID=1236 RepID=W9T3L6_9PSED)

HSP 1 Score: 47.0 bits (110), Expect = 6.240e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:   49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
            P A HNCWAW+ LG+ +RFSDDGEPG
Sbjct:   43 PSATHNCWAWK-LGNQYRFSDDGEPG 67          
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 TaxID=1245471 RepID=S6B0K3_PSERE)

HSP 1 Score: 46.6 bits (109), Expect = 8.550e-5
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:   49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
            P A HNCWAW+ LG+ +RFSDDGEPG
Sbjct:   43 PAASHNCWAWK-LGNQYRFSDDGEPG 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPF00291.230e-1487.50domain-containing protein n=1 Tax=Ectocarpus silic... [more]
UPF00294.650e-674.07domain-containing protein n=1 Tax=Frateuria aurant... [more]
IMPACT1.680e-552.27family member YigZ n=1 Tax=Pseudomonas carbonaria ... [more]
IMPACT2.430e-567.86family protein n=1 Tax=Castellaniella caeni TaxID=... [more]
Putative3.280e-561.29YigZ family protein n=1 Tax=Angulomicrobium tetrae... [more]
IMPACT4.590e-562.50family protein n=3 Tax=Pseudomonas viridiflava Tax... [more]
Uncharacterized6.150e-573.08protein n=2 Tax=Sinorhizobium medicae TaxID=110321... [more]
IMPACT6.150e-573.08family protein n=2 Tax=unclassified Pseudomonas Ta... [more]
Thymidylate6.240e-573.08synthase n=62 Tax=Gammaproteobacteria TaxID=1236 R... [more]
Uncharacterized8.550e-573.08protein n=1 Tax=Pseudomonas resinovorans NBRC 1065... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76533contigH-canaliculatus_M_contigs76533:74..199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHE6
PFAMsDUF1949,UPF0029
Model size126
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.01e-15
EggNOG OGsCOG1739@1|root,KOG3299@2759|Eukaryota
Descriptionresponse to benomyl
Cds size126
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.9408624-CDS-H-canaliculatus_M_contigs76533:73..1991696854103.9408624-CDS-H-canaliculatus_M_contigs76533:73..199Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76533 74..199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76533.1.1prot_H-canaliculatus_M_contigs76533.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76533 74..199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76533.1.1

>prot_H-canaliculatus_M_contigs76533.1.1 ID=prot_H-canaliculatus_M_contigs76533.1.1|Name=mRNA_H-canaliculatus_M_contigs76533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
TPCKNICWFPRVVEKHPKARHNCWAWRGLGDDHRFSDDGEPG
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mRNA from alignment at H-canaliculatus_M_contigs76533:74..199+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76533.1.1 ID=mRNA_H-canaliculatus_M_contigs76533.1.1|Name=mRNA_H-canaliculatus_M_contigs76533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76533:74..199+ (Hapterophycus canaliculatus Oshoro7m male)
ACACCCTGCAAAAATATCTGTTGGTTCCCTAGGGTGGTGGAGAAGCATCC AAAAGCGAGACATAATTGCTGGGCTTGGCGAGGGCTGGGGGACGACCATC GATTCAGCGATGACGGCGAGCCAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76533:74..199+

>mRNA_H-canaliculatus_M_contigs76533.1.1 ID=mRNA_H-canaliculatus_M_contigs76533.1.1|Name=mRNA_H-canaliculatus_M_contigs76533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76533:74..199+ (Hapterophycus canaliculatus Oshoro7m male)
ACACCCTGCAAAAATATCTGTTGGTTCCCTAGGGTGGTGGAGAAGCATCC
AAAAGCGAGACATAATTGCTGGGCTTGGCGAGGGCTGGGGGACGACCATC
GATTCAGCGATGACGGCGAGCCAGGT
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