mRNA_H-canaliculatus_M_contigs7649.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7649.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7649.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G136_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.630e-22
Identity = 42/67 (62.69%), Postives = 50/67 (74.63%), Query Frame = 3 
Query:  279 SPLETTSPSLCDNQKLGDGYCDVENNEEACLWDGGDCCECTCDADATYRCGTPEYDCLDPRGATCAD 479
            +P  T S SLCD+ ++GDG CD +NN E CLWDGGDCCECTCD  + YRCG  +YDCLDP G TC +
Sbjct:  318 TPSPTPSLSLCDDLRIGDGLCDDDNNNEDCLWDGGDCCECTCDTTSIYRCGANDYDCLDPSGTTCEE 384
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.170e-12
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:  309 CDNQKLGDGYCDVENNEEACLWDGGDCCECTCDADATYRCGT-PEYDCLDPRGATCADPDGTT 494
            CD   +GDGYC+++NN EAC +DGGDCCECTC+     RCG    + C+DP  A C D D  T
Sbjct:  214 CDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDP-AAPCVDDDSFT 275
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.500e-11
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:  309 CDNQKLGDGYCDVENNEEACLWDGGDCCECTCDADATYRCGT-PEYDCLDPRGATCADPDGTT 494
            CD+  +G+G+CD++NN EAC +DGGDCCECTC+      CG    + C+DP  A C D D  T
Sbjct:  200 CDSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPE-APCVDEDSFT 261
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.080e-10
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:  309 CDNQKLGDGYCDVENNEEACLWDGGDCCECTCDADATYRCGTPE-YDCLDPRGATCADPDGTT 494
            CD   +GDGYCD++NN  AC +DGGDCCECTC+ +   +CG    + C+DP GA C D D  T
Sbjct:  178 CDAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPN--NKCGGRSGFACIDP-GAPCVDDDSVT 237
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 3.450e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 3 
Query:  291 TTSPSLCDNQKLGDGYCDVENNEEACLWDGGDCCECTCDADATYRCGTPEYDCLDP 458
            +++ S C    + DG+CD+ENN   C WDGGDCCECTC  D+ Y CG   + CLDP
Sbjct: 1966 SSTTSDCIGVYVTDGWCDLENNNAECNWDGGDCCECTC-VDSQYECGIQGFSCLDP 2020
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.730e-9
Identity = 31/66 (46.97%), Postives = 37/66 (56.06%), Query Frame = 3 
Query:  306 LCDNQKLGDGYCDVENNEEACLWDGGDCCECTC---DADATYRCGTPEYDCLDPRGATCADPDGTT 494
            LC   ++G+GYCD  NN   C +DGGDCCECTC   D    Y C    + C+DP  A C D D  T
Sbjct:  236 LCSTGQIGNGYCDDSNNSPECAYDGGDCCECTCESHDDGYEYYCEPGSFACIDPE-AECVDDDDNT 300
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.010e-8
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 3 
Query:  324 LGDGYCDVENNEEACLWDGGDCCECTC--------DADATYRCGTPEYDCLDPRGATCADPD 485
            +GDG+CD  NN EAC +DGGDCCECTC        D D  Y C   E+ C+DP  A  +D D
Sbjct:   99 VGDGWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCR--EFSCIDPNAACVSDDD 158
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.210e-8
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 3 
Query:  324 LGDGYCDVENNEEACLWDGGDCCECTC--------DADATYRCGTPEYDCLDPRGATCADPD 485
            +GDG+CD  NN EAC +DGGDCCECTC        D D  Y C   E+ C+DP  A  +D D
Sbjct:  461 VGDGWCDKGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCR--EFSCIDPNAACVSDDD 520
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.470e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 3 
Query:  324 LGDGYCDVENNEEACLWDGGDCCECTCDA--DATYRCGTPEY-DCLDPRGA 467
            +GDG+CD  NN+EAC +DGGDCC CTC++  D  Y CG   + DC DP  A
Sbjct:   61 IGDGWCDSNNNKEACGYDGGDCCSCTCESVWDDDYTCGEDAFFDCKDPSAA 111
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BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Match: Hypothetical (protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SY22_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.560e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 3 
Query:  324 LGDGYCDVENNEEACLWDGGDCCECTCDADATYRCGTPEYDCLDP 458
            +GDG CD  NN  AC +DGGDCCE TC +  +Y CG   YDC+DP
Sbjct:  933 IGDGMCDSSNNNAACSYDGGDCCEATCVSSTSYTCGN--YDCVDP 975
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7649.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.630e-2262.69protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.170e-1252.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.500e-1149.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.080e-1052.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
LNR3.450e-1051.79domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.730e-946.97protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.010e-850.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.210e-850.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LNR2.470e-854.90domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical4.560e-857.78protein n=5 Tax=Pelagomonas calceolata TaxID=35677... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7649contigH-canaliculatus_M_contigs7649:3..2048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size578
Hectar predicted targeting categoryother localisation
Exons5
Cds size210
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7649.1.1prot_H-canaliculatus_M_contigs7649.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7649 33..656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.3234885-UTR-H-canaliculatus_M_contigs7649:2..321696854103.3234885-UTR-H-canaliculatus_M_contigs7649:2..32Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7649 3..32 +
1696854103.3647892-UTR-H-canaliculatus_M_contigs7649:656..7641696854103.3647892-UTR-H-canaliculatus_M_contigs7649:656..764Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7649 657..764 +
1696854103.3803856-UTR-H-canaliculatus_M_contigs7649:1289..13281696854103.3803856-UTR-H-canaliculatus_M_contigs7649:1289..1328Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7649 1290..1328 +
1696854103.3938348-UTR-H-canaliculatus_M_contigs7649:1511..16071696854103.3938348-UTR-H-canaliculatus_M_contigs7649:1511..1607Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7649 1512..1607 +
1696854103.4068832-UTR-H-canaliculatus_M_contigs7649:1953..20481696854103.4068832-UTR-H-canaliculatus_M_contigs7649:1953..2048Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7649 1954..2048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.3342185-CDS-H-canaliculatus_M_contigs7649:32..1191696854103.3342185-CDS-H-canaliculatus_M_contigs7649:32..119Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7649 33..119 +
1696854103.3490715-CDS-H-canaliculatus_M_contigs7649:533..6561696854103.3490715-CDS-H-canaliculatus_M_contigs7649:533..656Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7649 534..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7649.1.1

>prot_H-canaliculatus_M_contigs7649.1.1 ID=prot_H-canaliculatus_M_contigs7649.1.1|Name=mRNA_H-canaliculatus_M_contigs7649.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=70bp
MDSSCPPRGDDSYDCVDPGSECFGDDGGAIGTCPQRACPLAENTPRHAPR
PCRVCVLTTRPSQHLPLHP*
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mRNA from alignment at H-canaliculatus_M_contigs7649:3..2048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7649.1.1 ID=mRNA_H-canaliculatus_M_contigs7649.1.1|Name=mRNA_H-canaliculatus_M_contigs7649.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2046bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7649:3..2048+ (Hapterophycus canaliculatus Oshoro7m male)
GACGTCGGGGAGTGCTGTTGGTGCGACTGCATGGATTCGAGCTGCCCTCC
CAGGGGTGATGATAGCTATGACTGCGTCGACCCGGGCTCGGAGTGCTTCG
GAGACGACGGAGGTGCCGTACAGCAGTATGGTGTTGGAAGATATTTTCGT
TTTCTCTGCAAGCCAGCTGGGCATGATCTTTCACCACCCTGGGTTTTTGT
GGCCAACGCTTCGAGAGCTGCTCATTCGGGGACGTTTTTGAGGATATCTC
ATCGCACTCTTGTGCCCATTTGTCTTCATTATTTTTCACCTCCTCTTCTT
CCAGCAATAAAAGTTAAGTGCCCTTCGGAAAGGTAGTGGCACATATTCGA
GTAGTGTTTTACATCTATCTTCTACCATATACGTGCATTGTTCCTTCAGG
AATGGTTGCGGCCGAGCCAGCTTGCCCCCAGCTGTCGTAATTGCATAGCA
CAGAAAAAGCAAGCCTGCATATCTAAATCTTCGTTCACGATCCGATTCCA
ATGGTTCTCTTGTATCTTGGTGGTCCAGCAGATAGGTACATGCCCGCAAC
GTGCTTGTCCGTTGGCTGAAAACACCCCCCGGCACGCGCCACGTCCTTGT
CGTGTGTGTGTCTTAACAACGCGTCCGTCGCAGCACCTACCCCTGCACCC
GTGACATCCACGACAACTGAGCCTACCAGCACACAAGCGCCATCTCCGTT
GGAGACAACATCTCCGTCCCTGTGCGACAACCAAAAACTCGGAGACGGCT
ACTGCGACGTTGGTAAGTTTCGAACGTCCAAATATTTCGAACGCCCAGCC
GTAGGCAGGACTTTTGACACGGCAAGGGAGTCCCGATGNNNNNNNNNNCT
CCAGAGTAACAGCATACGTCGTGCGAGATGAACCTCGAGGTTTCTGTCGA
GTTCCAAACAATGAGGGTTCATTGTGTGTGGTTGAGACGATCACATGATG
AACAGATAATAAAGCTGGATGTTTCATGGAGGGAATGTTGCATCGTAGCC
AAGGGTGTTTTGCCGATCTGGTCCTTTTCGGTGGTAGCCCACAGTAGACT
TTCCTTCGAACTTTATCCCTTTTTGGCGCGATGGAGGGAGCGACCCGCTC
TCGTCCCCTATGTACCTCAACCTCGCCACATTTCGTCTTTCGGCGTCCAG
GGTGCCGTCGAAAGTCACTCGTTGAAAAATCTTCCATGGCGTCAGTCCGT
GGTGGTATGTAGAAGATCTGACCACCCCACTAGTCTACCCCCCCTCCCTG
CCCCCCGCTCTTTTTCTCTGCTTCCTCCGCATGTCAGAAAACAACGAAGA
GGCTTGCCTGTGGGACGGCGGAGACTGTAAGTGAAGGGTCTAACAGTGGC
TGGCCTACAACGCCTTGCAGACTTCGACAGGATTTTGTCTTGAGGAAGAA
TCGTAATTCTGTAGACATCAACATACAAACACAGTACTTGTAGTATACTC
GAGTATATTTTATTGACCAACAAGTTCTTCGCGTGCTGTCGCCGACGTTG
TTTCTCCAGGCTGTGAATGCACCTGTGACGCCGACGCAACTTACAGATGC
GGCACACCCGAGTACGACTGTTTGGATCCTAGAGGTGCCACCTGCGCAGA
TCCAGGTGCGACAAAGTGTTTGAAAGGCAAAACTGAGAGACGCTCCTGTT
ACATGAAAGATTCGAATTGGCGATAACGGCAAAAAAATGCGCCCCCACAG
GCTTCCCCCCCTTGTTGTATTGATCCGTGGCACACGCAACGAACCACGTT
TTACTTCATTTTTTTTGTGTGGTATTCCGCAAAACAGCAGTAAGCACGAG
TAAAAACTGCGTCTGCAAACGCCCATCTATCGTCACCTCGACCCCTGTTC
ATACTACGAACAAGGGATCTCATACTAACACGATCCCAACTCGCCCACGT
CTTCGGAACCCAATTTCCACCTCGCCACGCGGCGTTTTGAAATCGATGAA
GACGGGACCACTACATCTACTAGTTCTTCGCCGTCGCTCTACAAAGCCAT
TACTTGTACCTTTTTTGCGTCGGGTATCAGCTGCGCGGTGCTGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7649:3..2048+

>mRNA_H-canaliculatus_M_contigs7649.1.1 ID=mRNA_H-canaliculatus_M_contigs7649.1.1|Name=mRNA_H-canaliculatus_M_contigs7649.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=210bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7649:3..2048+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGATTCGAGCTGCCCTCCCAGGGGTGATGATAGCTATGACTGCGTCGA
CCCGGGCTCGGAGTGCTTCGGAGACGACGGAGGTGCCATAGGTACATGCC
CGCAACGTGCTTGTCCGTTGGCTGAAAACACCCCCCGGCACGCGCCACGT
CCTTGTCGTGTGTGTGTCTTAACAACGCGTCCGTCGCAGCACCTACCCCT
GCACCCGTGA
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