mRNA_H-canaliculatus_M_contigs76480.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76480.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76480.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Cadmium-translocating (P-type ATPase n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5IV93_9HYPH)

HSP 1 Score: 201 bits (510), Expect = 4.610e-58
Identity = 104/174 (59.77%), Postives = 132/174 (75.86%), Query Frame = 1
Query:    4 EDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            ++VL ++AAVE +SEHPI +AIVRAA    + LP I++F S TGFGVQA V  ++VLIGADRLM R+ IALG L+ +GD+  +KG +PLYAAIDG+IAAVI V DPIK S+  AI+ L K+GL   MITGDN  TA  IA +LGID V+A VLPEGKV  +E L++GG+ +AFV
Sbjct:  324 DEVLRLVAAVETTSEHPIAEAIVRAAEGEGIKLPKIEDFTSITGFGVQARVEGKNVLIGADRLMVRDKIALGDLEAQGDALGKKGKSPLYAAIDGKIAAVIAVADPIKQSTPEAIEALHKLGLKVAMITGDNQGTAEAIAADLGIDHVVAEVLPEGKVETLEGLRSGGEKLAFV 497          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Copper-translocating (P-type ATPase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7V2SKH8_9HYPH)

HSP 1 Score: 193 bits (491), Expect = 1.080e-56
Identity = 102/174 (58.62%), Postives = 125/174 (71.84%), Query Frame = 1
Query:    4 EDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            +DVL  +A+VE +SEHPI +AIVRAA  + L L  I++F S TG+GVQA V  RD+LIGADRLM RE ++LG L++ G    +KG TPLYAAIDG IAAVI V DPIK S+ +AI  L  +GL   MITGDN  TA  I  ELGID V+A VLPEGKV A+E+L+  G  +AFV
Sbjct:  169 DDVLQQVASVEVTSEHPIAEAIVRAAKEKELSLSKIEDFSSITGYGVQARVEGRDILIGADRLMEREGVSLGALQSAGIDLGKKGRTPLYAAIDGRIAAVIAVADPIKESTPAAISALHDLGLKVAMITGDNQGTADVIGRELGIDHVVAEVLPEGKVAALEALRADGSKLAFV 342          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Copper-transporting (P-type ATPase n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A0P1H5Z8_9RHOB)

HSP 1 Score: 198 bits (504), Expect = 3.640e-56
Identity = 104/175 (59.43%), Postives = 126/175 (72.00%), Query Frame = 1
Query:    1 EEDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            E++VL ++AAVE SSEHPI  AIV AA  R + LP  D+F S TGFGVQA V  R VLIGADR M RE + LG L  K  S A KG TPLYAA+DG+IAAVI V DP+K ++  AI+ L +MGL   MITGDN +TA+ IAD+LGID V+A VLPEGKV A+ +L+  G  +AFV
Sbjct:  526 EDEVLRLVAAVEQSSEHPIAKAIVAAAEAREIKLPDADSFDSITGFGVQASVGGRQVLIGADRFMEREGVDLGALAGKSGSLASKGKTPLYAAVDGQIAAVIAVADPVKPTTPGAIEVLHRMGLKVAMITGDNAVTAQAIADDLGIDHVVAEVLPEGKVAALNNLRADGGKLAFV 700          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Copper-translocating (P-type ATPase protein (Fragment) n=1 Tax=uncultured bacterium TaxID=77133 RepID=J9ZVH1_9BACT)

HSP 1 Score: 186 bits (471), Expect = 5.100e-56
Identity = 99/175 (56.57%), Postives = 123/175 (70.29%), Query Frame = 1
Query:    1 EEDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            E++VL ++AAVEA+SEHPI +AIVRAA+ + + L   ++F S TGFGV A +  R +LIGADRLM RE I LG L   G +  +KG +PLYAAIDG+ AAVI V DPIK S+  AI  L K+GL+  MITGDN  TA  IA ELGID V+A VLPEGKV  +  L+ GG  + FV
Sbjct:   73 EDEVLRLVAAVEATSEHPIAEAIVRAATAKGMTLAKAEDFDSITGFGVGASIEGRKLLIGADRLMLREGIELGTLAEAGTALGKKGKSPLYAAIDGKAAAVIAVADPIKQSTPEAIAALHKLGLTVAMITGDNKGTAEVIAAELGIDHVVAEVLPEGKVETLHKLREGGAKLVFV 247          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Lead, (cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0U9D4_9ZZZZ)

HSP 1 Score: 191 bits (486), Expect = 5.110e-56
Identity = 101/175 (57.71%), Postives = 125/175 (71.43%), Query Frame = 1
Query:    1 EEDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            E++VL ++AAVE +SEHPI +AIVRAA  +N+ L  I++F+S TGFGV A VN + + IGADRLM RE I LG L   G +  +KG +PLYA+IDG+ AAVI V DPIK S+  AI  L K+GL   MITGDN  TA  IA ELGID V+A VLPEGKV A+  L+ GG  +AFV
Sbjct:  143 EDEVLALVAAVETTSEHPIAEAIVRAAEAKNMKLAEIEDFESITGFGVSATVNGKKLFIGADRLMVREGIELGALADAGTALGKKGKSPLYASIDGKAAAVIAVADPIKESTPEAIAALHKLGLKVAMITGDNQGTAEVIAAELGIDHVVAEVLPEGKVDALHKLREGGASLAFV 317          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Heavy (metal translocating P-type ATPase n=1 Tax=Zongyanglinia huanghaiensis TaxID=2682100 RepID=A0A6L6WJF9_9RHOB)

HSP 1 Score: 197 bits (502), Expect = 6.950e-56
Identity = 104/175 (59.43%), Postives = 127/175 (72.57%), Query Frame = 1
Query:    1 EEDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            E DVL M+AAVE +SEHPI +AIV AA  R + LP +++F S TGFGV+A +  RDVLIGADRLMTRE + LG L     + A KG TPLYAAIDG++AAVI V DPIK ++  AI+ L  +GL   MITGDN +TA  IA+ELGID V+A VLP+GKV A+ESL   G  +AFV
Sbjct:  526 ETDVLRMVAAVERNSEHPIAEAIVAAAEERGVSLPEVNSFTSITGFGVKAQIEGRDVLIGADRLMTREGLDLGDLAAHSSTLASKGKTPLYAAIDGQVAAVIAVADPIKPTTPQAIKALHSLGLKVAMITGDNQVTAEAIAEELGIDHVVAEVLPQGKVAALESLSADGGKLAFV 700          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Cu+-exporting (ATPase n=2 Tax=Ruegeria intermedia TaxID=996115 RepID=A0A1M4Z408_9RHOB)

HSP 1 Score: 196 bits (498), Expect = 2.290e-55
Identity = 106/175 (60.57%), Postives = 126/175 (72.00%), Query Frame = 1
Query:    1 EEDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            E+ VL ++AAVEA+SEHPI  AI RAA  R L LP+ + F S TG+GVQA V    VLIGADRLM RE + +G L  +G   A +G TPLYAAIDG IAAVI VTDPIK  + +AI+ L  +GL   MITGDN  TAR IA +LGID V+A VLPEGKVTA+ESL+ GG  +AFV
Sbjct:  513 EDTVLRLVAAVEATSEHPIATAITRAAETRGLTLPSPEGFDSITGYGVQATVEGHRVLIGADRLMAREGVEIGGLAERGAELAAEGKTPLYAAIDGRIAAVIAVTDPIKPGTPAAIRALHDLGLKVAMITGDNAATARVIAAQLGIDHVVAEVLPEGKVTALESLREGGGKLAFV 687          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Copper-translocating (P-type ATPase n=1 Tax=Marinosulfonomonas sp. TaxID=2030815 RepID=A0A2G2B9A0_9RHOB)

HSP 1 Score: 192 bits (489), Expect = 4.630e-54
Identity = 99/174 (56.90%), Postives = 130/174 (74.71%), Query Frame = 1
Query:    4 EDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            ++VL ++AAVE +SEHPI +AIV+AA  + + L  +++F S TG+GVQA V+ + +LIGADRLM RE + LG L+ +GD+  +KG +PLYAAIDG+ AAVI V DPIK+S+ SAI  L  +GL   MITGDN  TA  IA ELGID V+A VLPEGKV  +E+L+T GQ +AFV
Sbjct:  527 DEVLQLVAAVEVTSEHPIAEAIVKAAKAKGMTLAKVEDFXSITGYGVQAKVDGKTLLIGADRLMAREGVELGSLENEGDALGKKGKSPLYAAIDGKAAAVIAVADPIKASTPSAIAALHDLGLKVAMITGDNQGTADAIARELGIDHVVAEVLPEGKVATLEALRTDGQKLAFV 700          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: heavy (metal translocating P-type ATPase n=2 Tax=Rhodobacterales TaxID=204455 RepID=UPI00193A26C0)

HSP 1 Score: 192 bits (488), Expect = 6.440e-54
Identity = 102/175 (58.29%), Postives = 128/175 (73.14%), Query Frame = 1
Query:    1 EEDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            E DVL ++A+VEA SEHPI  AIVR A    L L +ID+F S TGFGV A +  R V +GADRLM+RE I L  +K+ G++  ++G TPL+AAIDG++AAVI V+DPIK+S+  AI TL  +GL   MITGDN  TA+ IA +LGID V+A VLPEGKV AIE L+TGG  +AFV
Sbjct:  528 EADVLRLVASVEAMSEHPIAAAIVRHAKQNGLALASIDDFSSITGFGVSAVIEGRKVFVGADRLMSREGIDLDAVKSVGETLGKEGKTPLFAAIDGQLAAVIAVSDPIKASTAEAIGTLHDLGLKVAMITGDNEATAQAIAAKLGIDEVVAEVLPEGKVAAIERLQTGGSKIAFV 702          
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Match: Copper-translocating (P-type ATPase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2A5EZT6_9RHOB)

HSP 1 Score: 192 bits (487), Expect = 8.830e-54
Identity = 101/174 (58.05%), Postives = 127/174 (72.99%), Query Frame = 1
Query:    4 EDVLPMIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRDVLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTDPIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPEGKVTAIESLKTGGQLVAFV 525
            +DVL ++AAVE +SEHPI +AIVR+A    + LP I +F S TG+GV+A V  + +LIGADRLM RE I LG L   GD+  + G TPLYAAIDG+ AAVI V+DPIK+S+ +AI  L  +GL   MITGDN  TA  IA +LGID+VIA VLPEGKV  +E+L+ GGQ +AFV
Sbjct:  527 DDVLRLVAAVEVTSEHPIAEAIVRSAKANGMELPTISDFTSFTGYGVRASVEGKTLLIGADRLMAREGIELGALADDGDTLGKDGKTPLYAAIDGKAAAVIAVSDPIKASTPTAIAALHGLGLKVAMITGDNQGTADAIARKLGIDQVIAEVLPEGKVATLEALRAGGQKLAFV 700          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76480.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cadmium-translocating4.610e-5859.77P-type ATPase n=1 Tax=Devosia sp. TaxID=1871048 Re... [more]
Copper-translocating1.080e-5658.62P-type ATPase n=1 Tax=Hyphomicrobiales bacterium T... [more]
Copper-transporting3.640e-5659.43P-type ATPase n=5 Tax=Roseobacteraceae TaxID=28541... [more]
Copper-translocating5.100e-5656.57P-type ATPase protein (Fragment) n=1 Tax=unculture... [more]
Lead,5.110e-5657.71cadmium, zinc and mercury transporting ATPase Copp... [more]
Heavy6.950e-5659.43metal translocating P-type ATPase n=1 Tax=Zongyang... [more]
Cu+-exporting2.290e-5560.57ATPase n=2 Tax=Ruegeria intermedia TaxID=996115 Re... [more]
Copper-translocating4.630e-5456.90P-type ATPase n=1 Tax=Marinosulfonomonas sp. TaxID... [more]
heavy6.440e-5458.29metal translocating P-type ATPase n=2 Tax=Rhodobac... [more]
Copper-translocating8.830e-5458.05P-type ATPase n=1 Tax=Rhodobacteraceae bacterium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76480contigH-canaliculatus_M_contigs76480:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog999549.KI421513_gene2407
PFAMsE1-E2_ATPase,HMA,Hydrolase
Model size525
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.98e-55
EggNOG OGsCOG2217@1|root,COG2217@2|Bacteria,1MU08@1224|Proteobacteria,2TR80@28211|Alphaproteobacteria,2820C@191028|Leisingera
EC3.6.3.54
Descriptionhaloacid dehalogenase-like hydrolase
Cds size507
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.2214565-CDS-H-canaliculatus_M_contigs76480:0..5071696854103.2214565-CDS-H-canaliculatus_M_contigs76480:0..507Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76480 1..507 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.2385135-UTR-H-canaliculatus_M_contigs76480:507..5251696854103.2385135-UTR-H-canaliculatus_M_contigs76480:507..525Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76480 508..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76480.1.1prot_H-canaliculatus_M_contigs76480.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76480 1..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76480.1.1

>prot_H-canaliculatus_M_contigs76480.1.1 ID=prot_H-canaliculatus_M_contigs76480.1.1|Name=mRNA_H-canaliculatus_M_contigs76480.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=169bp
MIAAVEASSEHPIGDAIVRAASLRNLPLPAIDNFQSHTGFGVQAHVNNRD
VLIGADRLMTRENIALGLLKTKGDSFAEKGITPLYAAIDGEIAAVIGVTD
PIKSSSYSAIQTLQKMGLSPVMITGDNPLTARTIADELGIDRVIAGVLPE
GKVTAIESLKTGGQLVAFV
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mRNA from alignment at H-canaliculatus_M_contigs76480:1..525-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76480.1.1 ID=mRNA_H-canaliculatus_M_contigs76480.1.1|Name=mRNA_H-canaliculatus_M_contigs76480.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=525bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76480:1..525- (Hapterophycus canaliculatus Oshoro7m male)
GAAGAAGATGTACTGCCCATGATTGCGGCAGTAGAGGCCTCCTCAGAGCA TCCTATTGGAGACGCTATTGTGCGGGCAGCATCACTTCGGAACCTACCAC TACCGGCGATAGATAACTTTCAATCGCATACAGGCTTTGGTGTGCAGGCC CACGTAAACAACCGCGATGTACTGATCGGGGCTGATCGATTGATGACACG CGAAAATATAGCGTTGGGTCTATTAAAAACGAAAGGTGATTCTTTTGCTG AAAAAGGCATAACGCCACTTTATGCCGCTATTGATGGTGAAATCGCTGCG GTAATTGGTGTGACAGATCCAATAAAATCCAGCTCGTACTCAGCCATCCA GACACTTCAGAAGATGGGGCTATCGCCGGTTATGATTACAGGTGATAACC CACTCACCGCGCGCACCATAGCTGATGAGCTAGGGATTGATCGTGTTATT GCGGGTGTTCTACCTGAAGGCAAAGTGACTGCTATCGAAAGTCTGAAAAC AGGAGGGCAGCTAGTCGCTTTTGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76480:1..525-

>mRNA_H-canaliculatus_M_contigs76480.1.1 ID=mRNA_H-canaliculatus_M_contigs76480.1.1|Name=mRNA_H-canaliculatus_M_contigs76480.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=507bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76480:1..525- (Hapterophycus canaliculatus Oshoro7m male)
ATGATTGCGGCAGTAGAGGCCTCCTCAGAGCATCCTATTGGAGACGCTAT
TGTGCGGGCAGCATCACTTCGGAACCTACCACTACCGGCGATAGATAACT
TTCAATCGCATACAGGCTTTGGTGTGCAGGCCCACGTAAACAACCGCGAT
GTACTGATCGGGGCTGATCGATTGATGACACGCGAAAATATAGCGTTGGG
TCTATTAAAAACGAAAGGTGATTCTTTTGCTGAAAAAGGCATAACGCCAC
TTTATGCCGCTATTGATGGTGAAATCGCTGCGGTAATTGGTGTGACAGAT
CCAATAAAATCCAGCTCGTACTCAGCCATCCAGACACTTCAGAAGATGGG
GCTATCGCCGGTTATGATTACAGGTGATAACCCACTCACCGCGCGCACCA
TAGCTGATGAGCTAGGGATTGATCGTGTTATTGCGGGTGTTCTACCTGAA
GGCAAAGTGACTGCTATCGAAAGTCTGAAAACAGGAGGGCAGCTAGTCGC
TTTTGTG
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