mRNA_H-canaliculatus_M_contigs7648.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs7648.2.1
Unique Name	mRNA_H-canaliculatus_M_contigs7648.2.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS32_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 3.280e-57
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGKVVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSFR 327
            MFQSAYQDGDCVEVFSPAGKNPA +WKLSGKVVR+YEKGVKGYVLAVSGGATSKM LPKAPK  LGLRQ HLVLQVLT+TS DKPFSLELGLTDT GTRRRLVLSSSFR
Sbjct:    1 MFQSAYQDGDCVEVFSPAGKNPAADWKLSGKVVRMYEKGVKGYVLAVSGGATSKMQLPKAPKSLLGLRQRHLVLQVLTSTSHDKPFSLELGLTDTGGTRRRLVLSSSFR 109

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X353_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 5.170e-24
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 1

Query:   10 SAYQDGDCVEVFSPAGKNPAKEWKLSG--KVVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            + +Q G  VEVFSP GK+P   WK+ G   V R+YEK VKGYV A+SGG   KM LPK  +  LGL+Q +LV Q+     Q    S E+G++D   TRRRL  SSSF
Sbjct:    3 TTFQGGPFVEVFSPQGKDPTSAWKMCGGKAVKRVYEKSVKGYVYAISGGPGHKMQLPKDERKGLGLKQPYLVFQIYVPVGQH--ISFEVGVSDAESTRRRLFFSSSF 107

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FX86_GONPE)

HSP 1 Score: 99.8 bits (247), Expect = 3.830e-22
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            MF + YQ G  VEV    G+NP  +WK+SG    + ++Y+K +KGYV   SGG   ++ LP+  +  LGL Q HL+LQ+        PFSLELGLTD  GTRRR++LSSSF
Sbjct:    1 MFAAEYQGGTHVEVLGTQGQNPLAQWKVSGPQKGIQKVYDKALKGYVFVASGGC--RLALPRDERAALGLTQPHLLLQLEVGVGV--PFSLELGLTDAGGTRRRVILSSSF 107

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: Predicted (protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IME4_CHLRE)

HSP 1 Score: 97.4 bits (241), Expect = 2.490e-21
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            MF + YQ G  VEV    G+NP   WK+SG    V ++Y+K +KGYV A   GA  KM LP+  +  LGL Q HL+LQ+        PFS+E+G+TD++GTRRR++LSSSF
Sbjct:    1 MFSNEYQGGTHVEVLGTQGQNPLSAWKVSGPQKGVQKVYDKALKGYVFAC--GAGCKMALPRDDRSSLGLSQPHLLLQLEIGLGG--PFSVEVGVTDSSGTRRRMILSSSF 107

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DRK1_CHLRE)

HSP 1 Score: 97.4 bits (241), Expect = 2.520e-21
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            MF + YQ G  VEV    G+NP   WK+SG    V ++Y+K +KGYV A   GA  KM LP+  +  LGL Q HL+LQ+        PFS+E+G+TD++GTRRR++LSSSF
Sbjct:    1 MFSNEYQGGTHVEVLGTQGQNPLSAWKVSGPQKGVQKVYDKALKGYVFAC--GAGCKMALPRDDRSSLGLSQPHLLLQLEIGLGG--PFSVEVGVTDSSGTRRRMILSSSF 107

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835ST57_CHLIN)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-21
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            MF + YQ G  VEV    G+NP   WK+SG    V ++Y+K +KGYV A   GA  KM LP+  +  LGL Q HL+LQ+        PFS+E+G+TD+AGTRRR++LSSSF
Sbjct:    1 MFSNEYQGGTHVEVLGTQGQNPLSAWKVSGPAKGVQKVYDKALKGYVFAC--GAGCKMSLPRDDRSCLGLSQPHLLLQLEIGLGG--PFSVEVGVTDSAGTRRRMILSSSF 107

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W0H6_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 2.220e-20
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            MF + YQ G  VEV    G+NP   WK+SG    V ++Y+K +KGYV A   GA  KM LP+  +  LGL Q +L+LQ+        PFS+E+G+TD++GTRRR++LSSSF
Sbjct:    1 MFSNEYQGGTHVEVLGTQGQNPLSAWKVSGPQKGVQKVYDKALKGYVFAC--GAGCKMALPRDDRSSLGLSQPNLLLQLEIGLGG--PFSVEVGVTDSSGTRRRMILSSSF 107

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AD34_9CHLO)

HSP 1 Score: 93.6 bits (231), Expect = 4.850e-20
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            +F + YQ G  V+V    G+NP   WK+SG    V ++Y+K +KGYV   SGG   +M+LP+  +  LGL Q HL+LQ+    S    FSLE+GLTD +GTRRR++LSSSF
Sbjct:    3 LFGNEYQGGPHVDVLGTHGQNPLGPWKVSGPQKGVQKVYDKTLKGYVFVCSGGC--RMVLPRDDRAVLGLVQPHLLLQL--EISMGAHFSLEVGLTDASGTRRRVILSSSF 109

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BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NI46_MICPS)

HSP 1 Score: 92.8 bits (229), Expect = 1.020e-19
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 1

Query:   10 SAYQDGDCVEVFSPAGKNPAKEWK-LSGKVV-RLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            S +Q G  VEVF+P GK+P + WK L GK V R+YEKGVKGYV  V+G    KM LP   +  LGL+Q +LV Q+L    Q    SLE+ + D  GTRRRL+LS+SF
Sbjct:   26 STFQGGPFVEVFTPQGKDPTEGWKMLGGKCVKRMYEKGVKGYVHHVTGPPGLKMQLPADDRRGLGLKQPYLVFQMLLPAGQH--VSLEIVVADQEGTRRRLILSTSF 130

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Match: DUF667 (domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y4B3_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 1.050e-19
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 1

Query:    1 MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGK---VVRLYEKGVKGYVLAVSGGATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRRRLVLSSSF 324
            MF + YQ G  VE+ S  G+NP   W++SG    V ++Y+K +KGYV   +GG   ++ LPK  +  LGL Q HL+LQ+        PFS+E G+TD +GTRRR++LSSSF
Sbjct:    1 MFAAEYQGGSHVEILSTHGQNPLNAWRVSGPQKGVQKVYDKVLKGYVFVSAGGC--RLALPKDDRAALGLAQPHLLLQLEIGVGV--PFSVEAGVTDGSGTRRRIILSSSF 107

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs7648.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
DUF667	3.280e-57	90.83	domain-containing protein n=1 Tax=Ectocarpus silic...	[more]
Hypothetical	5.170e-24	50.47	protein (Fragment) n=1 Tax=Mantoniella antarctica ...	[more]
DUF667	3.830e-22	48.65	domain-containing protein n=1 Tax=Gonium pectorale...	[more]
Predicted	2.490e-21	48.65	protein (Fragment) n=1 Tax=Chlamydomonas reinhardt...	[more]
DUF667	2.520e-21	48.65	domain-containing protein n=1 Tax=Chlamydomonas re...	[more]
DUF667	3.440e-21	49.55	domain-containing protein n=1 Tax=Chlamydomonas in...	[more]
DUF667	2.220e-20	47.75	domain-containing protein n=1 Tax=Chlamydomonas sc...	[more]
DUF667	4.850e-20	47.75	domain-containing protein n=1 Tax=Tetrabaena socia...	[more]
Hypothetical	1.020e-19	52.34	protein (Fragment) n=1 Tax=Micromonas pusilla TaxI...	[more]
DUF667	1.050e-19	45.95	domain-containing protein n=1 Tax=Edaphochlamys de...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs7648	contig	H-canaliculatus_M_contigs7648:3896..5228 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LS32
PFAMs	DUF667
Model size	327
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06236
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting category	other localisation
Exons	3
Evalue	5.38e-58
EggNOG OGs	KOG3213@1\|root,KOG3213@2759\|Eukaryota
Description	regulation of cilium movement involved in cell motility
Cds size	327
COG category	S
BRITE	ko00000,ko00001,ko00536,ko04516

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854103.1616514-CDS-H-canaliculatus_M_contigs7648:3895..4020	1696854103.1616514-CDS-H-canaliculatus_M_contigs7648:3895..4020	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7648 3896..4020 +
1696854103.1755872-CDS-H-canaliculatus_M_contigs7648:4759..4827	1696854103.1755872-CDS-H-canaliculatus_M_contigs7648:4759..4827	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7648 4760..4827 +
1696854103.1876385-CDS-H-canaliculatus_M_contigs7648:5094..5228	1696854103.1876385-CDS-H-canaliculatus_M_contigs7648:5094..5228	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7648 5095..5228 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs7648.2.1	prot_H-canaliculatus_M_contigs7648.2.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs7648 3896..5228 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs7648:3896..5228+
coding sequence from alignment at H-canaliculatus_M_contigs7648:3896..5228+

protein sequence of mRNA_H-canaliculatus_M_contigs7648.2.1

>prot_H-canaliculatus_M_contigs7648.2.1 ID=prot_H-canaliculatus_M_contigs7648.2.1|Name=mRNA_H-canaliculatus_M_contigs7648.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=109bp
MFQSAYQDGDCVEVFSPAGKNPAKEWKLSGKVVRLYEKGVKGYVLAVSGG
ATSKMILPKAPKGQLGLRQWHLVLQVLTATSQDKPFSLELGLTDTAGTRR
RLVLSSSFR

mRNA from alignment at H-canaliculatus_M_contigs7648:3896..5228+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs7648.2.1 ID=mRNA_H-canaliculatus_M_contigs7648.2.1|Name=mRNA_H-canaliculatus_M_contigs7648.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1333bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7648:3896..5228+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCCAGTCAGCGTATCAGGATGGCGATTGCGTGGAGGTGTTCTCACC
GGCAGGAAAGAACCCTGCGAAGGAATGGAAGCTTAGCGGCAAAGTCGTGA
GGCTCTACGAAAAAGGGGTCAAGGGGTGAGCAGCAAATACGCGCCCCGCC
CTCCACACGTCAACCACAGCGTTGAGTTTTTATTCCTTTCTCAAACATCT
TACCTGGACCCTATTCCAAACTTCTTGCTAGCATCACGTTGGGCGCACTG
ACCGGGAGGGCGACACGAGAGTCTCGTGTTTTTAAAACTCCTCCCTCATA
CAGTCTTCGGTGTTTGCCTAGACGAGGTCATCGCGAGACTATGGGGTGGG
TTGCCCCTCTTCGCCTCGTTGCCTCTTACATGGTAGTCAAACCGACTGTT
GATAACATTTTCCCACATCACCGCCACTGTCCCGTGTCTCTTGGACATGA
TGCGATAAGATCTCAGATGGTCTAGCTTCATCGACATTCAACCGCAGCTA
CAGTGCTCGAGTTTCAAAGTTCCTAACTTGTACAGCTTCAAGCATGTACA
AGTATAAGTTGGTGGACTTCAAATGTACGGAATCATAGTTCTGCCTGGAG
ACGAGGCTCAGGGAGCATGCCCACTATGAGGGGTAGAGAAACTCGGCTAC
GCGAAACATCCTGTCGAACTTGGTATTCCTCGTGTTGGAACTGCTTGTGC
ATTGCTCGGAGAAAATTGTCCGTTTCGAAGGATGAAATGAGGAATTTTGG
TCTTGTGTTGCTCTCAGACATTCTGGCATTTCTCCTATTGCGTGAGCGAC
CAAGTTCACTCCCCGTTACGCCTCCTACTCATCCTTGGCGTCGCGCAACG
ATCGCGCGTTGCAGCTATGTGCTTGCCGTGAGCGGAGGGGCGACGTCGAA
GATGATCCTACCGAAGGCGCCTAAGGGGCAGCGTGAGTACAACGCACTTA
CGATTAAAACTGATGCTTGCGCCAACCCGCTTCGCAGTGAAGCACCCGAT
GGTACACCTACCCCCAATTCACTCACGGCATTCCTAGGCAACACGAAAAT
ATTCCTCATTCATTCCTTACATGAAGTTGGGGAAGCAAAAATACTGCACG
TACCATTTGATCACCCAACCTTCAACAAAACCGTGGGTAAAGAGCAAAAC
TCTCCCGCGATTCGCGTAAACAACGCGGTTTGGTTTCTGGGATTACCAGT
GGGCCTACGGCAGTGGCATTTGGTGCTGCAGGTGCTGACTGCCACATCAC
AAGACAAGCCTTTCTCGTTGGAACTCGGGTTGACGGACACTGCCGGCACG
CGACGGCGATTGGTGCTCTCCTCGTCATTCCGC

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7648:3896..5228+

>mRNA_H-canaliculatus_M_contigs7648.2.1 ID=mRNA_H-canaliculatus_M_contigs7648.2.1|Name=mRNA_H-canaliculatus_M_contigs7648.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7648:3896..5228+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCCAGTCAGCGTATCAGGATGGCGATTGCGTGGAGGTGTTCTCACC
GGCAGGAAAGAACCCTGCGAAGGAATGGAAGCTTAGCGGCAAAGTCGTGA
GGCTCTACGAAAAAGGGGTCAAGGGCTATGTGCTTGCCGTGAGCGGAGGG
GCGACGTCGAAGATGATCCTACCGAAGGCGCCTAAGGGGCAGCTGGGCCT
ACGGCAGTGGCATTTGGTGCTGCAGGTGCTGACTGCCACATCACAAGACA
AGCCTTTCTCGTTGGAACTCGGGTTGACGGACACTGCCGGCACGCGACGG
CGATTGGTGCTCTCCTCGTCATTCCGC