mRNA_H-canaliculatus_M_contigs7647.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7647.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7647.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7647.1.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.910e-5
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:   10 EAGVLYRRAVEIGERSLSPEDPDLAVWLNNLAGNPLLAMQGRY 138
            EA  LY RA+E+GE+ L P+ PDLA WLNN A   LL  QG+Y
Sbjct:   12 EADPLYLRAIEVGEKKLGPDHPDLATWLNNQA--VLLRKQGKY 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7647.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Kinesin1.910e-558.14light chain-like protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7647contigH-canaliculatus_M_contigs7647:3944..5020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLM3
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size486
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.13e-06
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size486
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.9805434-CDS-H-canaliculatus_M_contigs7647:3943..40501696854102.9805434-CDS-H-canaliculatus_M_contigs7647:3943..4050Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7647 3944..4050 +
1696854102.9961522-CDS-H-canaliculatus_M_contigs7647:4174..43221696854102.9961522-CDS-H-canaliculatus_M_contigs7647:4174..4322Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7647 4175..4322 +
1696854103.007366-CDS-H-canaliculatus_M_contigs7647:4653..47791696854103.007366-CDS-H-canaliculatus_M_contigs7647:4653..4779Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7647 4654..4779 +
1696854103.0192451-CDS-H-canaliculatus_M_contigs7647:4915..50201696854103.0192451-CDS-H-canaliculatus_M_contigs7647:4915..5020Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7647 4916..5020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7647.1.1prot_H-canaliculatus_M_contigs7647.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7647 3944..5020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7647.1.1

>prot_H-canaliculatus_M_contigs7647.1.1 ID=prot_H-canaliculatus_M_contigs7647.1.1|Name=mRNA_H-canaliculatus_M_contigs7647.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=162bp
MLDEAGVLYRRAVEIGERSLSPEDPDLAVWLNNLAGNPLLAMQGRYDEAG
PLCMRSHAIREKILGPQHPEVAASLHNLAELNVAQGKHAEAAPLYERSQA
IYEEMLGPEHPSYATVIHNWALSLQAQGKPDEAGPLLERSLAIREKALGP
EHPDIMLSLKSL
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mRNA from alignment at H-canaliculatus_M_contigs7647:3944..5020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7647.1.1 ID=mRNA_H-canaliculatus_M_contigs7647.1.1|Name=mRNA_H-canaliculatus_M_contigs7647.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7647:3944..5020+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTGGACGAGGCTGGCGTTCTCTATCGCCGCGCCGTTGAGATCGGGGA
GAGATCATTGAGCCCTGAAGACCCAGATCTTGCTGTGTGGCTGAACAACC
TGGCAGGGTTATTTCATCGCCAGGTAATGATCATAAGTCGCCGGACGTCT
CGTGTGGTGGATCGTGAGTCGCCGGATTTTTCGTGTGATCTTCGTTTGTC
GTTTTCGTCCTGGCCGAATGTTTCCTCACAGCAACCCGCTGCTTGCCATG
CAGGGCCGCTATGATGAGGCCGGCCCACTCTGCATGCGGTCACACGCCAT
ACGAGAGAAGATTTTGGGTCCGCAGCATCCTGAAGTGGCTGCATCGCTCC
ACAACCTGGCGGAGTTAAATGTAGCGCAGGTGCGATCCGACTGAGTGCTC
CAGAATAATCTTCGTTTGGATGTCTGAACTTCGGCAACACTTGCTGCGCG
TCGAACCTGTCGGAACGACTTCTGTAGAGGCTTCAGCTCACACATCGGGT
CCAAAATTCCGGGCAAGGCAACCATCTCGAACACATGCCGCTGAATGAAA
GGGCCACGGACACTTGGACAAGCACCTGACGCCCTGCGCACCCAATTACG
ACACCAGCGTTCAAAAACCGACCGCGGTTGTTGGAGAAATTTGTCTCGGC
TGTTGCAGAACCGATTTTCAGTGAAACTTACCTCTGCCGCGTTGTGAACC
ACATTTCCAGGGCAAGCATGCAGAGGCTGCGCCACTCTATGAGCGATCTC
AGGCGATATACGAAGAGATGCTTGGCCCTGAGCACCCGAGTTACGCTACT
GTCATCCACAACTGGGCGCTGTCGTTGCAGGCACAGGTGAGAGCCGCAAA
TATCCCAGAAGCAATCGACTGGTGCCTTGTAGTGCCTAACATCCGGGCGG
GTTCGTCGAGCATGTGTTCCTCCGCATCTACTATCGTGACCTCCCCTTTC
CTTATTTTTCGTTACATTCCAGGGCAAGCCGGATGAGGCAGGACCGTTGC
TTGAACGTTCATTGGCCATACGAGAGAAAGCGTTAGGTCCGGAGCATCCT
GATATAATGCTGTCGCTCAAAAGCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7647:3944..5020+

>mRNA_H-canaliculatus_M_contigs7647.1.1 ID=mRNA_H-canaliculatus_M_contigs7647.1.1|Name=mRNA_H-canaliculatus_M_contigs7647.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=486bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7647:3944..5020+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTGGACGAGGCTGGCGTTCTCTATCGCCGCGCCGTTGAGATCGGGGA
GAGATCATTGAGCCCTGAAGACCCAGATCTTGCTGTGTGGCTGAACAACC
TGGCAGGCAACCCGCTGCTTGCCATGCAGGGCCGCTATGATGAGGCCGGC
CCACTCTGCATGCGGTCACACGCCATACGAGAGAAGATTTTGGGTCCGCA
GCATCCTGAAGTGGCTGCATCGCTCCACAACCTGGCGGAGTTAAATGTAG
CGCAGGGCAAGCATGCAGAGGCTGCGCCACTCTATGAGCGATCTCAGGCG
ATATACGAAGAGATGCTTGGCCCTGAGCACCCGAGTTACGCTACTGTCAT
CCACAACTGGGCGCTGTCGTTGCAGGCACAGGGCAAGCCGGATGAGGCAG
GACCGTTGCTTGAACGTTCATTGGCCATACGAGAGAAAGCGTTAGGTCCG
GAGCATCCTGATATAATGCTGTCGCTCAAAAGCCTG
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