mRNA_H-canaliculatus_M_contigs76460.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76460.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76460.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76460.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 5.340e-22
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 MAWRRIDVHRAVERGDLAVLKRYLDAGGDAEKKDEEYGAAPVHWAAL 141
            MAWRRIDVHRAVERGDLAV+KRYLDAGGD E+KDEEYGAAPVHWAAL
Sbjct:    1 MAWRRIDVHRAVERGDLAVVKRYLDAGGDPEQKDEEYGAAPVHWAAL 47
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BLAST of mRNA_H-canaliculatus_M_contigs76460.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.400e-22
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 MAWRRIDVHRAVERGDLAVLKRYLDAGGDAEKKDEEYGAAPVHWAAL 141
            MAWRRIDVHRAVERGDLAV+KRYLDAGGD EKKDE+YGAAPVHWAAL
Sbjct:    1 MAWRRIDVHRAVERGDLAVVKRYLDAGGDPEKKDEKYGAAPVHWAAL 47
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BLAST of mRNA_H-canaliculatus_M_contigs76460.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 9.190e-11
Identity = 23/47 (48.94%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 MAWRRIDVHRAVERGDLAVLKRYLDAGGDAEKKDEEYGAAPVHWAAL 141
            MAW+R+D  RA +RG++++L++YLD+GG    +D++Y A P+HWA L
Sbjct:    1 MAWKRVDPFRAAQRGEVSMLRQYLDSGGSISAQDDKYLATPLHWACL 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76460.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.340e-2293.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.400e-2293.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin9.190e-1148.94repeat protein n=1 Tax=Tribonema minus TaxID=30337... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76460contigH-canaliculatus_M_contigs76460:144..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LAY3
PFAMsAnk,Ank_2,Ank_4,Ank_5,zf-MYND
Model size171
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.76e-23
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_005990.1
Descriptionspectrin binding
Cds size171
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.9103756-CDS-H-canaliculatus_M_contigs76460:143..3141696854102.9103756-CDS-H-canaliculatus_M_contigs76460:143..314Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76460 144..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76460.1.1prot_H-canaliculatus_M_contigs76460.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76460 144..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76460.1.1

>prot_H-canaliculatus_M_contigs76460.1.1 ID=prot_H-canaliculatus_M_contigs76460.1.1|Name=mRNA_H-canaliculatus_M_contigs76460.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=57bp
MAWRRIDVHRAVERGDLAVLKRYLDAGGDAEKKDEEYGAAPVHWAALVSE
ERWKSY*
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mRNA from alignment at H-canaliculatus_M_contigs76460:144..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76460.1.1 ID=mRNA_H-canaliculatus_M_contigs76460.1.1|Name=mRNA_H-canaliculatus_M_contigs76460.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76460:144..314+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGTGGCGACGAATAGATGTCCACCGCGCCGTCGAGCGGGGGGATCT
GGCAGTGCTCAAGCGCTACCTGGACGCGGGCGGAGACGCCGAGAAGAAGG
ACGAAGAATATGGTGCCGCGCCCGTGCACTGGGCGGCCCTGGTGAGCGAG
GAGAGGTGGAAGTCCTACTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76460:144..314+

>mRNA_H-canaliculatus_M_contigs76460.1.1 ID=mRNA_H-canaliculatus_M_contigs76460.1.1|Name=mRNA_H-canaliculatus_M_contigs76460.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76460:144..314+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGTGGCGACGAATAGATGTCCACCGCGCCGTCGAGCGGGGGGATCT
GGCAGTGCTCAAGCGCTACCTGGACGCGGGCGGAGACGCCGAGAAGAAGG
ACGAAGAATATGGTGCCGCGCCCGTGCACTGGGCGGCCCTGGTGAGCGAG
GAGAGGTGGAAGTCCTACTAA
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