mRNA_H-canaliculatus_M_contigs76458.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76458.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76458.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K677_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.780e-37
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    7 HYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEKV 204
            HYGWAFA+PDDPPFVPPGGYGSVP+G GAIPDPLHGFKTVR+IY+MAVG G L K+TVPILWDEKV
Sbjct:   20 HYGWAFASPDDPPFVPPGGYGSVPSGPGAIPDPLHGFKTVRQIYDMAVGPGKLSKYTVPILWDEKV 85          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: Putative (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.130e-32
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 1
Query:    7 HYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEK 201
            HYGWAFA+PDDPPFVPPGGYGSVP+G GAIPDPLH FKTVR+IY+MAVG G + K+TVPILWDEK
Sbjct:   91 HYGWAFASPDDPPFVPPGGYGSVPSGPGAIPDPLHSFKTVRQIYDMAVGPGKMSKYTVPILWDEK 155          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: GST (C-terminal domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L987_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-9
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 NSHYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEK 201
            ++H GW F  P DPP   PGG+GS    G  IPD ++G +T+RE+Y++A   G   K+TVP+LW +K
Sbjct:   66 DTHTGWIFKDPSDPPVSNPGGHGSFNCEG-CIPDTVNGARTIRELYDIANDTGG--KYTVPLLWCKK 129          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: GST (C-terminal domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BDT9_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 1.740e-9
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 NSHYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEK 201
            ++H GWAF  P DPP     G G+ P  G  +PD ++G K VR++YEMA G+     F+VP+LWD++
Sbjct:   76 DTHCGWAFVKPTDPPLAATNGKGAFPCTG-CVPDTVNGVKFVRDLYEMAGGKKVT--FSVPVLWDKQ 139          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: GST (C-terminal domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835TM32_CHLIN)

HSP 1 Score: 60.8 bits (146), Expect = 3.260e-9
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 NSHYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALK-KFTVPILWDEK 201
            ++H GW FA P DPP     G GS P  G   PD ++G + VR++YEMA   GA K  F+VP+LWD+K
Sbjct:   76 DTHCGWVFAKPTDPPLAATNGKGSFPCTG-CTPDTVNGVRFVRDLYEMA---GAKKVTFSVPVLWDKK 139          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: GST (C-terminal domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAT8_PYTIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.870e-8
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 NSHYGWAFAAPDDPPFVP-PGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEK 201
            ++H GWA   P   PF+  P G G   +  G  PDP+HG K VR++YE A+G     +F+VP+LWD+K
Sbjct:   92 DTHTGWAIVDPKATPFLAGPTGVGQY-SSEGCSPDPVHGAKFVRDLYERALGPNPGVRFSVPLLWDKK 158          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFY0_PYTOL)

HSP 1 Score: 53.1 bits (126), Expect = 1.670e-6
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 NSHYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEK 201
            ++H GWAF  P   PF   G  G   +  G  PDP+HG K VR++YE    +  ++ F+VP+LWD+K
Sbjct:   69 DTHKGWAFFDPKTTPFAT-GPNGEQLSTEGCTPDPIHGAKYVRDLYERVTKDPKVR-FSVPLLWDKK 133          
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4PDK7_HEMAN)

HSP 1 Score: 52.8 bits (125), Expect = 2.410e-6
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 NSHYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAVGEGALKKFTVPILWDEK 201
            ++H GW F  P DPP     G+G+    G  IPD ++    VR++YE+A   G  KK++VP+LWD+K
Sbjct:  173 DTHAGWIFKDPKDPPVPNQLGFGAFDCEG-CIPDFVNNCTFVRDVYELAKDTG--KKYSVPVLWDKK 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76458.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized7.780e-3786.36protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative2.130e-3283.08Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
GST1.130e-946.27C-terminal domain-containing protein n=1 Tax=Arcel... [more]
GST1.740e-944.78C-terminal domain-containing protein n=1 Tax=Chlam... [more]
GST3.260e-948.53C-terminal domain-containing protein n=2 Tax=Chlam... [more]
GST2.870e-844.12C-terminal domain-containing protein (Fragment) n=... [more]
Uncharacterized1.670e-641.79protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Hypothetical2.410e-641.79protein n=2 Tax=Hemiselmis andersenii TaxID=464988... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76458contigH-canaliculatus_M_contigs76458:3..206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3075.A0A087SR06
PFAMsGST_C_2,GST_N_2
Model size204
Max annot lvl33090|Viridiplantae
KEGG koko:K07393
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.77e-13
EggNOG OGsCOG0435@1|root,KOG2903@2759|Eukaryota,37HQY@33090|Viridiplantae
Ec32 ortholog descriptionPutative Glutathione S-transferase
Ec32 orthologEc-01_008030.1
EC1.8.5.7
Descriptionglutathione s-transferase
Cds size204
COG categoryO
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.7948542-CDS-H-canaliculatus_M_contigs76458:2..2061696854102.7948542-CDS-H-canaliculatus_M_contigs76458:2..206Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76458 3..206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76458.1.1prot_H-canaliculatus_M_contigs76458.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76458 3..206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76458.1.1

>prot_H-canaliculatus_M_contigs76458.1.1 ID=prot_H-canaliculatus_M_contigs76458.1.1|Name=mRNA_H-canaliculatus_M_contigs76458.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=68bp
NSHYGWAFAAPDDPPFVPPGGYGSVPAGGGAIPDPLHGFKTVREIYEMAV
GEGALKKFTVPILWDEKV
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mRNA from alignment at H-canaliculatus_M_contigs76458:3..206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76458.1.1 ID=mRNA_H-canaliculatus_M_contigs76458.1.1|Name=mRNA_H-canaliculatus_M_contigs76458.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76458:3..206+ (Hapterophycus canaliculatus Oshoro7m male)
AACAGTCACTACGGTTGGGCTTTTGCGGCGCCAGACGATCCGCCTTTCGT GCCCCCTGGCGGTTACGGATCAGTACCCGCGGGGGGCGGCGCCATCCCTG ACCCTCTCCACGGATTCAAGACGGTGCGGGAGATCTACGAAATGGCCGTG GGGGAGGGAGCGCTAAAGAAGTTCACGGTACCGATTCTCTGGGACGAGAA GGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76458:3..206+

>mRNA_H-canaliculatus_M_contigs76458.1.1 ID=mRNA_H-canaliculatus_M_contigs76458.1.1|Name=mRNA_H-canaliculatus_M_contigs76458.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76458:3..206+ (Hapterophycus canaliculatus Oshoro7m male)
AACAGTCACTACGGTTGGGCTTTTGCGGCGCCAGACGATCCGCCTTTCGT
GCCCCCTGGCGGTTACGGATCAGTACCCGCGGGGGGCGGCGCCATCCCTG
ACCCTCTCCACGGATTCAAGACGGTGCGGGAGATCTACGAAATGGCCGTG
GGGGAGGGAGCGCTAAAGAAGTTCACGGTACCGATTCTCTGGGACGAGAA
GGTG
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