mRNA_H-canaliculatus_M_contigs76440.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76440.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76440.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.600e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   16 FAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 120
            FAKKGKGSFNWRMKFKV LGPRT+AWKFPYLTVQ+
Sbjct: 1870 FAKKGKGSFNWRMKFKVSLGPRTRAWKFPYLTVQL 1904
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTJ4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-8
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 AKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 120
            AK+GKGSFNWRM+F V LGPR KA+KFPYL VQ+
Sbjct:  403 AKRGKGSFNWRMRFPVRLGPREKAFKFPYLHVQL 436
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.900e-8
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 AKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQ 117
            AK GKGSFNWRMKF+V LGPR ++ KFPYLT+Q
Sbjct: 1812 AKGGKGSFNWRMKFRVMLGPRARSSKFPYLTLQ 1844
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.900e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 AKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 120
            AK GKGSFNWRMKF+V LGPR ++ KFPYLT+Q+
Sbjct: 1430 AKGGKGSFNWRMKFRVILGPRARSSKFPYLTLQM 1463
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7N3_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 1.220e-5
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   28 GKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 120
            GKGSFNWR+ FKV LG  T+A KFPYL +Q+
Sbjct:  289 GKGSFNWRLLFKVQLGHNTRAMKFPYLHIQI 319
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI12_PYTIN)

HSP 1 Score: 47.4 bits (111), Expect = 5.830e-5
Identity = 23/33 (69.70%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:   19 AKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQ 117
            AKKGKGSFNWRMKF V LG +    KFPY  VQ
Sbjct: 1400 AKKGKGSFNWRMKFPVVLGHKQPNTKFPYFHVQ 1432
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CD42_SAPPC)

HSP 1 Score: 47.0 bits (110), Expect = 7.990e-5
Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:   19 AKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV 120
            AKKGK SFNWRMKFKV LG +    KFPY  +Q+
Sbjct:  627 AKKGKASFNWRMKFKVLLGHKQHNSKFPYFKIQM 660
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BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L724_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 7.990e-5
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:   52 MKFKVPLGPRTKAWKFPYLTVQV 120
            MKFKV LGPRT+AWKFPYLTVQ+
Sbjct:    1 MKFKVSLGPRTRAWKFPYLTVQL 23
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76440.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized8.600e-1491.43protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.690e-876.47protein n=1 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Uncharacterized5.900e-875.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.900e-873.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.220e-567.74protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Uncharacterized5.830e-569.70protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Uncharacterized7.990e-564.71protein n=1 Tax=Saprolegnia parasitica (strain CBS... [more]
Uncharacterized7.990e-586.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76440contigH-canaliculatus_M_contigs76440:140..259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LF87
PFAMsC2
Model size120
Max annot lvl2759|Eukaryota
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.41e-14
EggNOG OGsKOG1030@1|root,KOG1326@1|root,KOG1030@2759|Eukaryota,KOG1326@2759|Eukaryota
Descriptionplasma membrane repair
Cds size120
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.7233136-CDS-H-canaliculatus_M_contigs76440:139..2591696854102.7233136-CDS-H-canaliculatus_M_contigs76440:139..259Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76440 140..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76440.1.1prot_H-canaliculatus_M_contigs76440.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76440 140..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76440.1.1

>prot_H-canaliculatus_M_contigs76440.1.1 ID=prot_H-canaliculatus_M_contigs76440.1.1|Name=mRNA_H-canaliculatus_M_contigs76440.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=40bp
MNPSRFAKKGKGSFNWRMKFKVPLGPRTKAWKFPYLTVQV
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mRNA from alignment at H-canaliculatus_M_contigs76440:140..259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76440.1.1 ID=mRNA_H-canaliculatus_M_contigs76440.1.1|Name=mRNA_H-canaliculatus_M_contigs76440.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76440:140..259+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAATCCCTCCAGGTTCGCCAAGAAAGGCAAGGGGTCGTTCAACTGGCG
AATGAAGTTCAAGGTGCCCCTCGGCCCACGTACCAAGGCGTGGAAATTTC
CATACCTCACCGTGCAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76440:140..259+

>mRNA_H-canaliculatus_M_contigs76440.1.1 ID=mRNA_H-canaliculatus_M_contigs76440.1.1|Name=mRNA_H-canaliculatus_M_contigs76440.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76440:140..259+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAATCCCTCCAGGTTCGCCAAGAAAGGCAAGGGGTCGTTCAACTGGCG
AATGAAGTTCAAGGTGCCCCTCGGCCCACGTACCAAGGCGTGGAAATTTC
CATACCTCACCGTGCAGGTA
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