mRNA_H-canaliculatus_M_contigs764.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs764.1.1
Unique NamemRNA_H-canaliculatus_M_contigs764.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs764.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP6_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 9.130e-23
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 STGARDRFPRVLVLAGEFPKARKAFADGASAVPAWAFLRWVSQMLGVSGRKEGPVVIQVS 180
            S GAR  FPRVL LAG+F KAR AFADGASAVP WAFLRW+SQMLGV+GR+EGPVVIQ S
Sbjct: 1124 SAGARHSFPRVLYLAGKFSKARAAFADGASAVPEWAFLRWISQMLGVTGREEGPVVIQAS 1183
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BLAST of mRNA_H-canaliculatus_M_contigs764.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.350e-20
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 STGARDRFPRVLVLAGEFPKARKAFADGASAVPAWAFLRWVSQMLGVSGRKEGPVVIQ 174
            S GARD FPRVL LAG+F KAR AFADGAS VP W FLRW  QMLGV+GR+EGPVVI+
Sbjct:  228 SAGARDSFPRVLYLAGKFSKARAAFADGASVVPEWTFLRWRWQMLGVTGREEGPVVIK 285
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BLAST of mRNA_H-canaliculatus_M_contigs764.1.1 vs.
Match: DNA-dependent (protein kinase catalytic subunit-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D78876)

HSP 1 Score: 48.1 bits (113), Expect = 9.950e-5
Identity = 23/56 (41.07%), Postives = 30/56 (53.57%), Query Frame = 1 
Query:    1 STGARDRFPRVLVLAGEFPKARKAFADGASAVPAWAFLRWVSQMLGVSGRKEGPVV 168
            S  A  RFPR+L L    P A +      S VP W F+ W+SQM+ +  + EGP V
Sbjct: 3508 SQEAMQRFPRLLQLVEACPDAMQLMIQEVSDVPCWMFIGWISQMVALLDKPEGPAV 3563
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs764.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized9.130e-2380.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.350e-2075.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
DNA-dependent9.950e-541.07protein kinase catalytic subunit-like n=1 Tax=Pati... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs764contigH-canaliculatus_M_contigs764:4112..4309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LKP6
PFAMsDUF3385,FAT,FATC,NUC194,PI3_PI4_kinase,SMG1
Model size198
Max annot lvl2759|Eukaryota
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-23
EggNOG OGsCOG5032@1|root,KOG0891@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size198
COG categoryBDLTU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.4405851-CDS-H-canaliculatus_M_contigs764:4111..43091696854102.4405851-CDS-H-canaliculatus_M_contigs764:4111..4309Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs764 4112..4309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs764.1.1prot_H-canaliculatus_M_contigs764.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs764 4112..4309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs764.1.1

>prot_H-canaliculatus_M_contigs764.1.1 ID=prot_H-canaliculatus_M_contigs764.1.1|Name=mRNA_H-canaliculatus_M_contigs764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
STGARDRFPRVLVLAGEFPKARKAFADGASAVPAWAFLRWVSQMLGVSGR
KEGPVVIQVSYRTVD*
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mRNA from alignment at H-canaliculatus_M_contigs764:4112..4309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs764.1.1 ID=mRNA_H-canaliculatus_M_contigs764.1.1|Name=mRNA_H-canaliculatus_M_contigs764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs764:4112..4309+ (Hapterophycus canaliculatus Oshoro7m male)
TCCACGGGCGCGAGGGACCGCTTTCCCAGGGTCCTCGTCCTGGCGGGTGA
ATTCCCGAAAGCTCGAAAGGCGTTTGCTGACGGCGCCTCCGCGGTGCCCG
CGTGGGCTTTCCTGCGATGGGTGTCGCAAATGCTCGGCGTTTCGGGCCGG
AAAGAGGGACCAGTGGTGATTCAAGTGAGTTATCGAACCGTAGATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs764:4112..4309+

>mRNA_H-canaliculatus_M_contigs764.1.1 ID=mRNA_H-canaliculatus_M_contigs764.1.1|Name=mRNA_H-canaliculatus_M_contigs764.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs764:4112..4309+ (Hapterophycus canaliculatus Oshoro7m male)
TCCACGGGCGCGAGGGACCGCTTTCCCAGGGTCCTCGTCCTGGCGGGTGA
ATTCCCGAAAGCTCGAAAGGCGTTTGCTGACGGCGCCTCCGCGGTGCCCG
CGTGGGCTTTCCTGCGATGGGTGTCGCAAATGCTCGGCGTTTCGGGCCGG
AAAGAGGGACCAGTGGTGATTCAAGTGAGTTATCGAACCGTAGATTGA
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