mRNA_H-canaliculatus_M_contigs76390.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs76390.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs76390.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD9_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.560e-28
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFA LSV+NILCAFGLLLTEAKV
Sbjct:   79 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFASLSVDNILCAFGLLLTEAKV 133

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.730e-26
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFA LSVENILCAFGLLLTEAKV
Sbjct:  323 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFASLSVENILCAFGLLLTEAKV 377

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.870e-20
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            QV V YALPDRTL + RPP+NRLPLVDFSYRPLF CLSV+N++  FG LLTEAKV
Sbjct:  646 QVHVQYALPDRTLLLKRPPKNRLPLVDFSYRPLFTCLSVDNVIAVFGCLLTEAKV 700

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXZ4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.830e-11
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            Q++V  ALPDR L I+RPP+N LPLVDF +RPLF  L + N+L  F  +  E KV
Sbjct:  417 QIQVQLALPDRNLIISRPPKNELPLVDFPFRPLFQVLDLNNVLLVFSCIALELKV 471

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Y6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.430e-11
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            Q++V   LPD+TL I+RPP+N  PLVDFS+RPLF  L + N+L  F   + E KV
Sbjct:  426 QIQVQLTLPDKTLVISRPPKNDFPLVDFSFRPLFQSLDINNVLLIFTCAILECKV 480

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDD8_PYTOL)

HSP 1 Score: 65.1 bits (157), Expect = 6.400e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            Q++V   LPDR L I+RPP N LPLVDFS+RPLF  L V N+L  F   + E K+
Sbjct:  437 QIQVQLTLPDRNLVISRPPHNELPLVDFSFRPLFQALDVNNVLQLFTCAVLEYKI 491

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJ13_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 8.720e-11
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            +VEV Y LP   L I+RPP+N LP+VDFSYRPLFA L V+NIL  F  L  E  +
Sbjct:  368 RVEVLYTLPQLMLQISRPPQNHLPMVDFSYRPLFAFLGVDNILTLFTCLCMEMTI 422

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGL3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.050e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            +V+V   LP+RTL ++RPP+N+LP  DFS+RPLF  L + N++  F  LL E KV
Sbjct:  349 RVQVQLTLPERTLMVSRPPKNQLPQADFSFRPLFQMLDLHNVMTVFTCLLFEQKV 403

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2LRL4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.670e-10
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1

Query:    1 QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            +VE+ ++  D   +I RPP+N+ PL D SYRPLF  LSV NI+   G LLTE+KV
Sbjct:  309 KVEIKFSFTDVPCSICRPPKNKFPLFDLSYRPLFTALSVGNIITIVGCLLTESKV 363

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BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YZ68_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.800e-10
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1

Query:    1 QVEVNYALPDRT-LTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLLTEAKV 165
            ++EVN+AL D   ++I RP  NRLPLV FSY PLFA LSV NIL   G LL E +V
Sbjct:  491 KIEVNFALTDELQVSIVRPAANRLPLVGFSYHPLFASLSVGNILVVLGCLLKETRV 546

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs76390.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UDENN	5.560e-28	96.36	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Uncharacterized	1.730e-26	98.18	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	2.870e-20	76.36	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
Uncharacterized	1.830e-11	54.55	protein n=1 Tax=Phytophthora megakarya TaxID=4795 ...	[more]
Uncharacterized	3.430e-11	52.73	protein n=1 Tax=Pythium brassicum TaxID=1485010 Re...	[more]
Uncharacterized	6.400e-11	54.55	protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep...	[more]
Uncharacterized	8.720e-11	58.18	protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48...	[more]
Uncharacterized	3.050e-10	50.91	protein n=1 Tax=Aphanomyces euteiches TaxID=100861...	[more]
Hypothetical	5.670e-10	52.73	protein n=1 Tax=Leptocylindrus danicus TaxID=16351...	[more]
Hypothetical	7.800e-10	58.93	protein (Fragment) n=1 Tax=Ditylum brightwellii Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs76390	contig	H-canaliculatus_M_contigs76390:8..172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D8LU92
PFAMs	ArfGap,C1_2,C2,DENN,DUF3490,PH,RhoGEF,dDENN,uDENN
Model size	165
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12486,ko:K20164
KEGG Pathway	ko04144,map04144
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
Exons	1
Evalue	2.83e-27
EggNOG OGs	COG5347@1\|root,KOG2127@1\|root,KOG0703@2759\|Eukaryota,KOG2127@2759\|Eukaryota
Description	Rab guanyl-nucleotide exchange factor activity
Cds size	165
COG category	L
BRITE	ko00000,ko00001,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854102.394015-CDS-H-canaliculatus_M_contigs76390:7..172	1696854102.394015-CDS-H-canaliculatus_M_contigs76390:7..172	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs76390 8..172 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs76390.1.1	prot_H-canaliculatus_M_contigs76390.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs76390 8..172 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs76390:8..172-
coding sequence from alignment at H-canaliculatus_M_contigs76390:8..172-

protein sequence of mRNA_H-canaliculatus_M_contigs76390.1.1

>prot_H-canaliculatus_M_contigs76390.1.1 ID=prot_H-canaliculatus_M_contigs76390.1.1|Name=mRNA_H-canaliculatus_M_contigs76390.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=55bp
QVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFACLSVENILCAFGLLL
TEAKV

mRNA from alignment at H-canaliculatus_M_contigs76390:8..172-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs76390.1.1 ID=mRNA_H-canaliculatus_M_contigs76390.1.1|Name=mRNA_H-canaliculatus_M_contigs76390.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76390:8..172- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGAGGTGAATTACGCCTTGCCGGACCGAACTCTGACCATCACACG
GCCGCCGAGAAATCGGCTGCCCCTGGTGGACTTCAGCTACCGGCCGCTGT
TCGCCTGCCTGTCGGTGGAGAACATTCTTTGCGCGTTCGGGCTCCTGCTC
ACCGAGGCGAAGGTG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76390:8..172-

>mRNA_H-canaliculatus_M_contigs76390.1.1 ID=mRNA_H-canaliculatus_M_contigs76390.1.1|Name=mRNA_H-canaliculatus_M_contigs76390.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=165bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76390:8..172- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGAGGTGAATTACGCCTTGCCGGACCGAACTCTGACCATCACACG
GCCGCCGAGAAATCGGCTGCCCCTGGTGGACTTCAGCTACCGGCCGCTGT
TCGCCTGCCTGTCGGTGGAGAACATTCTTTGCGCGTTCGGGCTCCTGCTC
ACCGAGGCGAAGGTG