mRNA_H-canaliculatus_M_contigs76363.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76363.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76363.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP20_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.010e-24
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:   13 YLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIGL 171
            YLDHLRKRA+GEIMTTAAWLR+FVTSHPGY KDS VTDEIAYDLV ACQEIGL
Sbjct:  612 YLDHLRKRAAGEIMTTAAWLRKFVTSHPGYGKDSAVTDEIAYDLVQACQEIGL 664
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCF6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.490e-16
Identity = 33/53 (62.26%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   13 YLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIGL 171
            YL+ + KRASGE++T A W+R+FV +HP Y  DSVV+DEIAYDL++AC++IGL
Sbjct:  183 YLEFIEKRASGELVTPATWMRKFVRNHPAYKGDSVVSDEIAYDLMIACRDIGL 235
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPV7_FISSO)

HSP 1 Score: 79.7 bits (195), Expect = 4.910e-16
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   10 RYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIGL 171
            +YLD L +RA GE++T A W+R FV +HP Y +DS+VTDEIA+DL+VAC++IGL
Sbjct:  837 KYLDFLERRAKGELVTPATWMRTFVRNHPKYKRDSIVTDEIAFDLMVACRDIGL 890
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5E5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.530e-16
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   10 RYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIGL 171
            +YLD + KRA+G+++T A W+R +V SHP Y  DSVVTDEIAYDL+  C+EIGL
Sbjct:  167 KYLDFIEKRATGKLLTPATWMRNYVRSHPAYKGDSVVTDEIAYDLMQTCKEIGL 220
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.700e-16
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   13 YLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIG 168
            YL+ LR+RASGE+MT AAW+R+FVT HP Y  DSVV+DE+AYDL++A +++G
Sbjct:  606 YLELLRRRASGEVMTAAAWMRRFVTRHPAYCGDSVVSDEVAYDLMLAARDVG 657
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHG0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.780e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   10 RYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIG 168
            +YLD +  RA+GE MT AAW+R+FVTSHP Y +DSVV+D IAYDL  AC+EIG
Sbjct:  107 QYLDLIEARATGESMTNAAWIREFVTSHPEYKQDSVVSDGIAYDLCNACREIG 159
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCH6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.790e-15
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   10 RYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIG 168
            +Y+D + KRASG ++T A W+R+FV  HPGY  DSV+T+ IAYDL+VAC+EIG
Sbjct:  167 QYMDLIEKRASGVLVTPATWMRKFVREHPGYKNDSVITEAIAYDLMVACKEIG 219
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEL6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-15
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:   10 RYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIG 168
            +YLD ++KRA+GE++T A W+R FV +H  Y  DSVV+DEIAYDL+VAC+EIG
Sbjct:  868 QYLDFIQKRATGELVTPATWIRNFVRTHESYKGDSVVSDEIAYDLMVACKEIG 920
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SR32_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 8.120e-15
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   10 RYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIG 168
            RYL+ + +RASG++MT AAW+R+FV  HP Y KDSVVT  IAYDL+ AC EIG
Sbjct:  592 RYLNFISRRASGDLMTPAAWMRRFVREHPEYKKDSVVTPGIAYDLMKACDEIG 644
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BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Match: Glutamate--cysteine (ligase n=6 Tax=Tetraodontidae TaxID=31031 RepID=H2UP05_TAKRU)

HSP 1 Score: 75.9 bits (185), Expect = 1.110e-14
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    7 LRYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVVACQEIG 168
            L YL  ++KRASGE+MTTA W+R+FV +HP Y +DSV+TD+I YDL+V C +I 
Sbjct:  537 LNYLKLIKKRASGELMTTAKWMREFVANHPQYKEDSVITDKINYDLMVKCNQIA 590
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76363.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glutamate--cysteine2.010e-2490.57ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP20_... [more]
Glutamate--cysteine2.490e-1662.26ligase n=1 Tax=Amphora coffeiformis TaxID=265554 R... [more]
Glutamate--cysteine4.910e-1661.11ligase n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]
Glutamate--cysteine5.530e-1661.11ligase n=1 Tax=Grammatophora oceanica TaxID=210454... [more]
Glutamate--cysteine6.700e-1663.46ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Glutamate--cysteine8.780e-1666.04ligase n=1 Tax=Florenciella parvula TaxID=236787 R... [more]
Glutamate--cysteine1.790e-1560.38ligase n=1 Tax=Proboscia inermis TaxID=420281 RepI... [more]
Glutamate--cysteine4.360e-1562.26ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID... [more]
Glutamate--cysteine8.120e-1564.15ligase n=1 Tax=Alexandrium monilatum TaxID=311494 ... [more]
Glutamate--cysteine1.110e-1459.26ligase n=6 Tax=Tetraodontidae TaxID=31031 RepID=H2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76363contigH-canaliculatus_M_contigs76363:300..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog31033.ENSTRUP00000038676
Preferred nameGCLC
PFAMsGCS
Model size171
Max annot lvl33208|Metazoa
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000166,GO:0000287,GO:0000302,GO:0000303,GO:0000305,GO:0000902,GO:0000904,GO:0001101,GO:0001678,GO:0002009,GO:0002165,GO:0003008,GO:0003013,GO:0003018,GO:0003254,GO:0003674,GO:0003824,GO:0004357,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006355,GO:0006518,GO:0006520,GO:0006534,GO:0006536,GO:0006575,GO:0006732,GO:0006749,GO:0006750,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007409,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007584,GO:0008015,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009064,GO:0009069,GO:0009266,GO:0009408,GO:0009410,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0012501,GO:0014070,GO:0014823,GO:0016043,GO:0016595,GO:0016597,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0017109,GO:0019184,GO:0019219,GO:0019222,GO:0019725,GO:0019752,GO:0019852,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030554,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031406,GO:0031667,GO:0032268,GO:0032269,GO:0032270,GO:0032354,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033500,GO:0034097,GO:0034284,GO:0034641,GO:0034698,GO:0035107,GO:0035114,GO:0035120,GO:0035150,GO:0035220,GO:0035239,GO:0035295,GO:0035690,GO:0035728,GO:0035729,GO:0036094,GO:0042176,GO:0042221,GO:0042391,GO:0042398,GO:0042493,GO:0042592,GO:0042593,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043523,GO:0043524,GO:0043531,GO:0043603,GO:0043604,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0044752,GO:0045454,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046685,GO:0046686,GO:0046688,GO:0046872,GO:0046982,GO:0046983,GO:0048037,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050865,GO:0050866,GO:0050880,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051186,GO:0051188,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051409,GO:0051716,GO:0051881,GO:0051900,GO:0055082,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061136,GO:0061564,GO:0065007,GO:0065008,GO:0070555,GO:0070848,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071260,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071363,GO:0071371,GO:0071372,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0071774,GO:0071840,GO:0080090,GO:0090066,GO:0097066,GO:0097067,GO:0097068,GO:0097069,GO:0097159,GO:0097367,GO:0104004,GO:0120036,GO:0120039,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1904386,GO:1904387,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2000489,GO:2000490,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons1
Evalue1.82e-15
EggNOG OGsKOG3754@1|root,KOG3754@2759|Eukaryota,38BDB@33154|Opisthokonta,3BAJC@33208|Metazoa,3CXBU@33213|Bilateria,481BZ@7711|Chordata,48ZNY@7742|Vertebrata,49U4V@7898|Actinopterygii
EC6.3.2.2
DescriptionGlutamate--cysteine ligase catalytic subunit
Cds size171
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.2049718-CDS-H-canaliculatus_M_contigs76363:299..4701696854102.2049718-CDS-H-canaliculatus_M_contigs76363:299..470Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76363 300..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76363.1.1prot_H-canaliculatus_M_contigs76363.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76363 300..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76363.1.1

>prot_H-canaliculatus_M_contigs76363.1.1 ID=prot_H-canaliculatus_M_contigs76363.1.1|Name=mRNA_H-canaliculatus_M_contigs76363.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=57bp
SSLRYLDHLRKRASGEIMTTAAWLRQFVTSHPGYAKDSVVTDEIAYDLVV
ACQEIGL
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mRNA from alignment at H-canaliculatus_M_contigs76363:300..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76363.1.1 ID=mRNA_H-canaliculatus_M_contigs76363.1.1|Name=mRNA_H-canaliculatus_M_contigs76363.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76363:300..470+ (Hapterophycus canaliculatus Oshoro7m male)
TCATCTCTCAGGTACCTGGACCACCTGCGGAAACGCGCGTCCGGGGAGAT
CATGACGACCGCCGCTTGGCTTCGGCAATTCGTCACGAGCCACCCGGGCT
ACGCCAAGGACTCGGTCGTTACGGACGAGATCGCGTACGACCTCGTCGTG
GCGTGCCAGGAGATCGGGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76363:300..470+

>mRNA_H-canaliculatus_M_contigs76363.1.1 ID=mRNA_H-canaliculatus_M_contigs76363.1.1|Name=mRNA_H-canaliculatus_M_contigs76363.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76363:300..470+ (Hapterophycus canaliculatus Oshoro7m male)
TCATCTCTCAGGTACCTGGACCACCTGCGGAAACGCGCGTCCGGGGAGAT
CATGACGACCGCCGCTTGGCTTCGGCAATTCGTCACGAGCCACCCGGGCT
ACGCCAAGGACTCGGTCGTTACGGACGAGATCGCGTACGACCTCGTCGTG
GCGTGCCAGGAGATCGGGCTG
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