mRNA_H-canaliculatus_M_contigs7635.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7635.4.1
Unique NamemRNA_H-canaliculatus_M_contigs7635.4.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7635.4.1 vs.
Match: C2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W0_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 7.110e-61
Identity = 99/164 (60.37%), Postives = 129/164 (78.66%), Query Frame = 1 
Query:    1 SQLNFRWPFGVLKTPVAKTAVLTDKAMIDTVLDDALNLIFKPITIAGGMAKRMSKAEKIAYGGGAVAVSTTVGGGVSVGLMALAVPAIFLALLFLPLTLMAGFFFAATMMLLLPFALAAGWVVFCSRPVQCRLWLPSLFWVVNKSSLVNRALLQPPQAASGKVQ 492
            +QL FR PFGV+KT  AKTA+LTDKA ID V+D  +N++FKP+ +A G+AKR++KA+KI YGG A AVS+ VGGG S+ L+ALAVP +F+ALLFLPLTLM GFF A  M++++P  LA GWVV CSRPVQCR+W+P LFW + KS ++++ALLQPP  +    Q
Sbjct:  137 AQLKFRAPFGVIKTAAAKTAILTDKAKIDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKIIYGGSAAAVSSAVGGGASMTLLALAVPVLFMALLFLPLTLMGGFFLAVAMLVIMPCVLALGWVVLCSRPVQCRVWMPWLFWAMCKSPILHKALLQPPPHSPSGTQ 300
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7635.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
C27.110e-6160.37domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7635contigH-canaliculatus_M_contigs7635:2918..5134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons4
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.1329763-CDS-H-canaliculatus_M_contigs7635:2917..29621696854102.1329763-CDS-H-canaliculatus_M_contigs7635:2917..2962Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7635 2918..2962 -
1696854102.1444306-CDS-H-canaliculatus_M_contigs7635:3631..37751696854102.1444306-CDS-H-canaliculatus_M_contigs7635:3631..3775Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7635 3632..3775 -
1696854102.1577415-CDS-H-canaliculatus_M_contigs7635:4265..44961696854102.1577415-CDS-H-canaliculatus_M_contigs7635:4265..4496Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7635 4266..4496 -
1696854102.1708407-CDS-H-canaliculatus_M_contigs7635:5059..51341696854102.1708407-CDS-H-canaliculatus_M_contigs7635:5059..5134Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7635 5060..5134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7635.4.1prot_H-canaliculatus_M_contigs7635.4.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7635 2918..5134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7635.4.1

>prot_H-canaliculatus_M_contigs7635.4.1 ID=prot_H-canaliculatus_M_contigs7635.4.1|Name=mRNA_H-canaliculatus_M_contigs7635.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=165bp
SQLNFRWPFGVLKTPVAKTAVLTDKAMIDTVLDDALNLIFKPITIAGGMA
KRMSKAEKIAYGGGAVAVSTTVGGGVSVGLMALAVPAIFLALLFLPLTLM
AGFFFAATMMLLLPFALAAGWVVFCSRPVQCRLWLPSLFWVVNKSSLVNR
ALLQPPQAASGKVQ*
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mRNA from alignment at H-canaliculatus_M_contigs7635:2918..5134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7635.4.1 ID=mRNA_H-canaliculatus_M_contigs7635.4.1|Name=mRNA_H-canaliculatus_M_contigs7635.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2217bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7635:2918..5134- (Hapterophycus canaliculatus Oshoro7m male)
TCGCAGCTCAACTTCCGGTGGCCGTTTGGAGTGTTGAAAACGCCTGTGGC
GAAGACGGCGGTGCTCACTGACAAGGTACTCCAAGGTCGTGAAGAGGCCC
AAACAACGCGTACTACAGTGTCACAGGTCGCAGTCGCTCGCGTCGACGTA
ACGCTGGGCGTAGCAGCGCTGATTCTACCCGCACCCAATCGCTTCGGCGG
CGCGTTTCGCTTCGAATACGCATGTATCTACGTGAAACGTGTTTTTTGCT
ACACTGCGTCAAGCGGCTCATCGCTTCGCACTTCGCACATTGTTCGTTAT
GTTTCGGATCGACTTGTGTTTCTGCTCGACATTTTCTCTGCTGTCTACAA
GTTCTTCGATGTATTTGAACGTCTCCCGTTCTTTTCCAGACTGCCTCTCA
TGCTGCTTGTCTTTAATTACGCCCGTATCTCACGCTGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGGCCGTGATGGTGGTGGTGCCGCTGCTATCGTGC
TGTTTTATCTTGCATGTTTGCAGCCTGAATCCGAACGACGCGTTCTTAGC
CCAGCTCGGAGCAATTTGGTCCTCCCACTTAGCTTAGTCTAGCCTAGCTA
TGCTCACAACTCTCCGCGTTCTCCGTCGTCACTTTCAGGCGATGATCGAC
ACGGTGCTAGACGACGCCCTAAACCTCATCTTCAAGCCCATAACCATCGC
TGGGGGCATGGCCAAACGCATGTCCAAGGCCGAGAAGATAGCATACGGCG
GCGGTGCCGTCGCAGTGTCGACTACGGTGGGCGGAGGGGTTTCCGTGGGT
TTGATGGCCCTGGCCGTGCCTGCGATCTTCCTGGCCCTCCTGTTCCTTCC
GTTGACGCTGATGGCAGGGGTGGGTTGACCAAGCGACGCGCCTGTGGGAA
CAGCTGGTCCTGGTTTCGTAGAATCGGTGGCGTGTCGAGGGCGTACATTT
ATTGCCTCCCTTCCGCGGCTTGCTGGATGTTTCCGTATCTGCTCGTGTCC
AGAGTCTGTACAAGTAGTCTACTTGCAGACAACAGTCGTGCCACGACTCC
TTCAACCCCTTACGATCGGAGAGTTGCCCAAAAGGGGACGCGGGCCTGGC
GCACGTTGTAGTGGAAAGATCACAGCACACCGATCCACGTCGGGAGGTGG
GTGGAAAGCGTCCACGGCTCTTAACCCCCCTGCCAGCCTGACGAAAGAAG
TATCCCAAATCGGTATGTACCCCCTGTGTAACGAAAACCCAGATGATGCC
ATACGTAGCCTGCACACCTTTACACGCCCCTTGCATTGCTCGCTCGTGCA
CCGACTCGTTCCGGAGAGGAAACGCCCCCCCCCCCCCTTACCTCTGGCGG
CGGAATCAGTTTTTCTTCGCGGCGACCATGATGCTGCTGCTGCCGTTCGC
GCTGGCGGCGGGGTGGGTCGTCTTCTGCTCACGACCCGTCCAGTGCCGTC
TGTGGCTCCCCTCGCTCTTCTGGGTGGTCAATAAGTCCTCCCTCGTCAAC
AGGGTGAGCGCGGGCGTCGGCCATTTGCACCCTGTCCATTTGCCCCGCCT
TCCACAGGCTTCCACGTGTGGAGTTTGTTTTTTCAGGGGAGTTGTGGAGC
GGTGAAGGTCTTAGCACCGTTTTGGATGTGAAAGGTCCCCGGATGTGTGC
AAGTTTGACCCCGAGGTGATAGTTGTAAAGGTCTTGTGTGCGTTGCATGG
GCGGACGGCGTTGTTCCTTTCCCTTCAGCGGTGGGCGAACGTCGCCCTTG
AGATGTTTTACGAAAAATAGCCAACACGGAAGAAGGGAGGAATTAAGTAA
GAAAGGAAAACCCTCGGAGACACACACACACGTCTCAGCCCGCGTCTCAC
GAGCCTTGTGCAGTAAGGGTTCAGTTCATCGGACGGGATAAACATGCCAA
TCAAGCCAGAAGGCTGTGAATCTCGGTGGGGCGGCATACGTTTTGTTTAG
GCGAAGCACGTATGGTATGTATGCTTCTCCCGCTGCCTTTTGCTCCGATG
ATCAGGCTGTCTGCAGGGCGAGTAGGCGTAAACATGGCTGTGTGCGGACC
GACAAGTTTTGATAAGATGTATTTTTGACGGTCGGCGCGGTCCACCCGCG
CCCACATGCCCCCCCTCAGCCAGCAAGACATAGACATGACGTAACATGTC
ACTGTTCGCACGTTCCCTGCAGGCCCTGCTTCAGCCCCCTCAAGCCGCCT
CCGGCAAGGTGCAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7635:2918..5134-

>mRNA_H-canaliculatus_M_contigs7635.4.1 ID=mRNA_H-canaliculatus_M_contigs7635.4.1|Name=mRNA_H-canaliculatus_M_contigs7635.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=495bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7635:2918..5134- (Hapterophycus canaliculatus Oshoro7m male)
TCGCAGCTCAACTTCCGGTGGCCGTTTGGAGTGTTGAAAACGCCTGTGGC
GAAGACGGCGGTGCTCACTGACAAGGCGATGATCGACACGGTGCTAGACG
ACGCCCTAAACCTCATCTTCAAGCCCATAACCATCGCTGGGGGCATGGCC
AAACGCATGTCCAAGGCCGAGAAGATAGCATACGGCGGCGGTGCCGTCGC
AGTGTCGACTACGGTGGGCGGAGGGGTTTCCGTGGGTTTGATGGCCCTGG
CCGTGCCTGCGATCTTCCTGGCCCTCCTGTTCCTTCCGTTGACGCTGATG
GCAGGGTTTTTCTTCGCGGCGACCATGATGCTGCTGCTGCCGTTCGCGCT
GGCGGCGGGGTGGGTCGTCTTCTGCTCACGACCCGTCCAGTGCCGTCTGT
GGCTCCCCTCGCTCTTCTGGGTGGTCAATAAGTCCTCCCTCGTCAACAGG
GCCCTGCTTCAGCCCCCTCAAGCCGCCTCCGGCAAGGTGCAATGA
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