prot_H-canaliculatus_M_contigs7635.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs7635.1.1
Unique Nameprot_H-canaliculatus_M_contigs7635.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length45
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7635.1.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-17
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0 
Query:    1 QTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRGVYTGGI 43
            Q KELHNGRAAMMGI GLVTHN +TGGMPAFEQISRGVY+GGI
Sbjct:  169 QLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGI 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7635.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8V9_ECTSI1.170e-1788.37Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 1..40
e-value: 1.2E-7
score: 34.0
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 1..26
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 1..22
e-value: 1.7E-5
score: 25.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7635contigH-canaliculatus_M_contigs7635:145..279 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7635.1.1mRNA_H-canaliculatus_M_contigs7635.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs7635 145..279 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs7635.1.1 ID=prot_H-canaliculatus_M_contigs7635.1.1|Name=mRNA_H-canaliculatus_M_contigs7635.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
QTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRGVYTGGIQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind