mRNA_H-canaliculatus_M_contigs76337.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76337.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76337.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76337.1.1 vs.
Match: Uncharacterized (protein n=6 Tax=Bordetella TaxID=517 RepID=A0A1W6YS00_9BORD)

HSP 1 Score: 52.0 bits (123), Expect = 9.110e-5
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  328 FPTTSPGIVEERSQASRFLAQTTFGPTTFAINALLETNYSSWIDEQINMP 477
            +P  +PG      QASRFLAQ TFGPT   I+ ++   Y++W+DEQ+N+P
Sbjct:   20 YPVPTPG------QASRFLAQATFGPTPAEIDRVVRMGYAAWLDEQLNLP 63
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BLAST of mRNA_H-canaliculatus_M_contigs76337.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=beta proteobacterium AAP51 TaxID=1523421 RepID=A0A0N1AK89_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 9.420e-5
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  361 RSQASRFLAQTTFGPTTFAINALLETNYSSWIDEQINMPIT 483
            RS+A+RFLAQ +FGPT  +I+ L+   Y++WIDEQ+ +P T
Sbjct:   77 RSEAARFLAQASFGPTDASIDRLMSVGYAAWIDEQLALPAT 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76337.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.110e-548.00protein n=6 Tax=Bordetella TaxID=517 RepID=A0A1W6Y... [more]
Uncharacterized9.420e-553.66protein n=1 Tax=beta proteobacterium AAP51 TaxID=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76337contigH-canaliculatus_M_contigs76337:34..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog762376.AXYL_05210
PFAMsDUF1800
Model size486
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000202
EggNOG OGsCOG5267@1|root,COG5267@2|Bacteria,1MWJK@1224|Proteobacteria,2VJD4@28216|Betaproteobacteria
DescriptionProtein of unknown function (DUF1800)
Cds size468
COG categoryG
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.830569-UTR-H-canaliculatus_M_contigs76337:33..511696854101.830569-UTR-H-canaliculatus_M_contigs76337:33..51Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76337 34..51 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.850883-CDS-H-canaliculatus_M_contigs76337:51..5191696854101.850883-CDS-H-canaliculatus_M_contigs76337:51..519Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76337 52..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76337.1.1prot_H-canaliculatus_M_contigs76337.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76337 52..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76337.1.1

>prot_H-canaliculatus_M_contigs76337.1.1 ID=prot_H-canaliculatus_M_contigs76337.1.1|Name=mRNA_H-canaliculatus_M_contigs76337.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=156bp
MECVSTPVFVDAEQTAFTMLGSPLTTPSVVNESRLSVSSGNRYCRNGCTL
DDAVDRQYIYAPLWHYDSASNMYIDLSLVGQLDPWQAVWVQTGQVLTGSA
ELLFPTTSPGIVEERSQASRFLAQTTFGPTTFAINALLETNYSSWIDEQI
NMPITS
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mRNA from alignment at H-canaliculatus_M_contigs76337:34..519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76337.1.1 ID=mRNA_H-canaliculatus_M_contigs76337.1.1|Name=mRNA_H-canaliculatus_M_contigs76337.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76337:34..519+ (Hapterophycus canaliculatus Oshoro7m male)
AGTGTTGCCTGCGCTGGAATGGAATGTGTGTCTACACCTGTATTTGTCGA
CGCTGAACAGACAGCCTTCACTATGCTGGGCTCACCACTGACGACGCCAT
CGGTGGTTAACGAGTCCAGGCTAAGCGTTAGTTCTGGTAATCGTTATTGT
CGAAATGGATGCACGCTGGATGATGCAGTGGATCGTCAATATATTTATGC
GCCGTTGTGGCACTATGACTCGGCCAGTAATATGTATATCGATCTGAGCC
TTGTTGGTCAGTTGGATCCTTGGCAAGCGGTATGGGTACAAACCGGGCAG
GTGCTAACAGGTTCAGCCGAATTATTATTTCCCACTACGTCGCCCGGAAT
TGTGGAAGAGCGGTCTCAGGCTTCAAGATTCCTTGCTCAAACTACTTTTG
GCCCTACAACGTTTGCTATCAATGCTCTGTTAGAAACGAATTACAGCAGC
TGGATCGATGAGCAGATTAATATGCCAATAACATCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76337:34..519+

>mRNA_H-canaliculatus_M_contigs76337.1.1 ID=mRNA_H-canaliculatus_M_contigs76337.1.1|Name=mRNA_H-canaliculatus_M_contigs76337.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76337:34..519+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAATGTGTGTCTACACCTGTATTTGTCGACGCTGAACAGACAGCCTT
CACTATGCTGGGCTCACCACTGACGACGCCATCGGTGGTTAACGAGTCCA
GGCTAAGCGTTAGTTCTGGTAATCGTTATTGTCGAAATGGATGCACGCTG
GATGATGCAGTGGATCGTCAATATATTTATGCGCCGTTGTGGCACTATGA
CTCGGCCAGTAATATGTATATCGATCTGAGCCTTGTTGGTCAGTTGGATC
CTTGGCAAGCGGTATGGGTACAAACCGGGCAGGTGCTAACAGGTTCAGCC
GAATTATTATTTCCCACTACGTCGCCCGGAATTGTGGAAGAGCGGTCTCA
GGCTTCAAGATTCCTTGCTCAAACTACTTTTGGCCCTACAACGTTTGCTA
TCAATGCTCTGTTAGAAACGAATTACAGCAGCTGGATCGATGAGCAGATT
AATATGCCAATAACATCC
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