mRNA_H-canaliculatus_M_contigs7631.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7631.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7631.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7631.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ7_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 5.260e-84
Identity = 179/270 (66.30%), Postives = 199/270 (73.70%), Query Frame = 2 
Query:    2 NGPPSSTPVTPSAVAVCRLFSDVTERYRPLRDPLKQLRFARRVQEPVLRSVDFDGEAGGAGXXXX-----VTSSADGMAATWAAALGAAMLAAGPGGEEEDDKSPIGRWRGYCLAVSSCAYVCAVLSESEDDILFAEMGETAAXXXXXXXXXXXXXXXXX-SSSLGAVGNVVGAAIGGVSQAVNSAATTAETATAGVVRAVGSQSNIIGPSHAISAALTSLKGAARRVRKASSSSGRGDGYGVGNPGGGVIASIRPPPARADGVRADGQE 793
            NGP SSTPVTPSAVA+CRLFSDVTERYRPLRDPLKQLRFA+ VQEPVLRS    GEA     XXX     VTS+ADG+ ATWAAAL AAM+  GPG E+  DKSPIGRWRGYCLA++SCAYVCAVL ESEDD+LFA+M ETAA                  SSSLG+VGNVVGAA+GGVS AV   ATTAETATAGV RAVG Q +IIGP+HAISAALTSLKGAARRVRK +S + R +G   G+ G G  AS+        GVR DG +
Sbjct:  464 NGPRSSTPVTPSAVALCRLFSDVTERYRPLRDPLKQLRFAKHVQEPVLRSASGGGEATKGAPXXXXXXXXVTSAADGLTATWAAALEAAMV--GPGQEDGGDKSPIGRWRGYCLALASCAYVCAVLRESEDDMLFADMAETAAAAWAAAREVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGASGN-RNNGTDSGSGGAGTAASMIVEEEGDGGVRDDGSD 730
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7631.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK1_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 8.470e-45
Identity = 98/140 (70.00%), Postives = 108/140 (77.14%), Query Frame = 2 
Query:  266 GPGGEEEDDKSPIGRWRGYCLAVSSCAYVCAVLSESEDDILFAEMGE-TAAXXXXXXXXXXXXXXXXXSSSLGAVGNVVGAAIGGVSQAVNSAATTAETATAGVVRAVGSQSNIIGPSHAISAALTSLKGAARRVRKASS 682
            GPG E+  DKSPIGRWRGYCL ++SCAYVCAVL ESEDD+LFA+M E TAA                 SSSLG+VGNVVGAA+GGVS AV   ATTAETATAGV RAVG Q +IIGP+HAISAALTSLKGAARRVRK +S
Sbjct:    3 GPGQEDGGDKSPIGRWRGYCLVLASCAYVCAVLRESEDDMLFADMAEATAAAWAAAREVSGEGRAARPSSSLGSVGNVVGAAVGGVSHAVTELATTAETATAGVARAVGVQGSIIGPTHAISAALTSLKGAARRVRKGAS 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7631.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.260e-8466.30protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.470e-4570.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7631contigH-canaliculatus_M_contigs7631:333..4737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size977
Hectar predicted targeting categoryother localisation
Exons6
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7631.1.1prot_H-canaliculatus_M_contigs7631.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7631 333..4737 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.6027677-CDS-H-canaliculatus_M_contigs7631:332..4871696854101.6027677-CDS-H-canaliculatus_M_contigs7631:332..487Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7631 333..487 +
1696854101.619874-CDS-H-canaliculatus_M_contigs7631:1467..16071696854101.619874-CDS-H-canaliculatus_M_contigs7631:1467..1607Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7631 1468..1607 +
1696854101.632263-CDS-H-canaliculatus_M_contigs7631:2524..26771696854101.632263-CDS-H-canaliculatus_M_contigs7631:2524..2677Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7631 2525..2677 +
1696854101.6472802-CDS-H-canaliculatus_M_contigs7631:3377..34891696854101.6472802-CDS-H-canaliculatus_M_contigs7631:3377..3489Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7631 3378..3489 +
1696854101.6589885-CDS-H-canaliculatus_M_contigs7631:4156..43141696854101.6589885-CDS-H-canaliculatus_M_contigs7631:4156..4314Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7631 4157..4314 +
1696854101.669983-CDS-H-canaliculatus_M_contigs7631:4480..47371696854101.669983-CDS-H-canaliculatus_M_contigs7631:4480..4737Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7631 4481..4737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7631.1.1

>prot_H-canaliculatus_M_contigs7631.1.1 ID=prot_H-canaliculatus_M_contigs7631.1.1|Name=mRNA_H-canaliculatus_M_contigs7631.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=325bp
ERPSIVDACDALRGGGVSPVFRRHGALPPSAGPPEAAALRETRPGARPSI
GRFRRRGGGGGGKRGSNLVGGRHGGDLGGRSWRGDACGRTRWGRGRRQVP
DWTVEGLLPGRVLLRLRLRRPQRVGGRHSLRRDGRDGSGRGCWLGGRGAG
GRRTAILVVGGRGQRCRGGHRRGVPGSQLGGHDSRDSYRGRGACGGIAEQ
HYRPLPRHLRGADIAQGRRPSSAQGLVLLGTGRRLRCRKPGGRGNRFDPA
TTGEGGWSQGGWPGGGRGGRGGGAAGGRGGGAESWFAAEAAAAAAVVGEW
TGSVFGEEAEQYGVMLEAMLRGAVE
back to top

mRNA from alignment at H-canaliculatus_M_contigs7631:333..4737+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7631.1.1 ID=mRNA_H-canaliculatus_M_contigs7631.1.1|Name=mRNA_H-canaliculatus_M_contigs7631.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4405bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7631:333..4737+ (Hapterophycus canaliculatus Oshoro7m male)
GAACGGCCCTCCATCGTCGACGCCTGTGACGCCCTCCGCGGTGGCGGTGT
GTCGCCTGTTTTCCGACGTCACGGAGCGCTACCGCCCTCTGCGGGACCCC
CTGAAGCAGCTGCGCTTCGCGAGACGCGTCCAGGAGCCCGTCCTTCGATC
GGTCGGTTGAATTTGTTTCTATGTCTTGTCTGTTTTTTCTTGTCTCCCGT
TCTCCGTCTTCCGTTCGAGCTTCTGCATGGTGGGCCTCCTGTTTTTTGTG
GTGTAGCAGCCAACACCTCCAGGATGAAAGTGCGGTCGCCTGCGAGGCAT
GACCTGTTGCTGCGCGAACGGCGAGAGTGCCCGCAGTTGGCACGAGTTAT
GAAGAGAAAAAGCACTCCACGGCGTCATCAAACGTATGGCATCGGTGGGA
GGGAGCGGGCTTCAGCGGTGATGTCTGCACTCCCCCACGTAGCAGCCTAC
GTTGGTAAGCTACACGTCCGTTTCAGGAAAAGCACGTTCAGAAGCCGCTC
CACTTTTTCCTCACTTTTGCACGGTACTCACCCCACCCTTCACGTGCTTC
GTGAGTGACTAGGTGTGCTATGCGTGTATGTGCGTGTGCGTGTCTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTT
TTGACGCTTTGTCAGTTATCTGGGCTTCGTGGGTGACTAAGTGTGCTTTG
AGTGTGTGTGTGTGTGTGTTTTAACGCTTCGTCGGTTCTCTGAGCTCCGA
AAGCGAAGATTGCCAAAACGGTTGCAGATCCAATCCATCCGAAATGAAAA
ACTGTGACAATCGAACCGAAACCAAAAACTAACGTCCTCGGAGGAAGGAA
TCGACGAAGACAGCGGAGACTTTTCCTGGCTGTTCTGCCGATCGAATGAA
AACCGACGCACCACAATTGTCAAGTGTAAACCAACTCACAACAAGCATCG
GCAAGCCCCAGCCAAAGCCACCGAGCGGCTCACCAGCCGAGAGGCCCGCC
CACCGACCCAGTCTTCGACCGACGACCCGACCCAATCCACCGAACATGAA
TCGAAACAACAGTACCGCGACATGCTTTACTGGAGGGGCCAGGACTGCCG
TCTCAACTCGGTCTTCCGGGACGATGGCGGCGGAGATTTCGACGGCGAGG
CGGGGGGGGCGGGGGGAAGCGGGGGAGTAACCTCGTCGGCGGACGGCATG
GCGGCGACTTGGGCGGCCGCTCTTGGCGCGGCGATGCTTGCGGCAGGACC
CGGTGGGGAAGAGGAAGACGACAAGGTGAGTCGAAGGAAGAGTGCGTGAG
ACAGAGGAGGAGGAGGAGGAGGAAACTGCAGTGAGCCCTGATGCTGTAGG
TACATTGCTTCCGAGATGGCTGGATTCAATCAAGCTTGTTCTTGCGATGC
GCTTGTGTTCGTTGTTGTTGGTCGGCTTCGTTATCGTGGCCTTTTTTATT
GCTGTTGTGGTCGCTATTTTCTTATTTGAAGGTTGAGGTGGTGGTATTGA
GATACCTGTGCTGGTGATGATGGTCGTGTTCGCCTTGGCTCTCTTGGTTG
TGGTGGCTGTGGTGGCTGTGGTGGCGGTGGTGGTGGCGATGGTGGTATTA
CCGGCGTCGTCGTTTTTGGAGAACCCGATTCGTCTTGTTGTACGGGCTGG
CGACTGCAAGACCAACCCCCATGCGGGGCAGCAAACAAGAGCGAGGACGA
TTGCAGAGTGAGGAAATAAGTCGAAAAAAGTCGATTTTTACCTTGCTCGG
CATTTTTTTTTGTACGATTTCATCCCGTCCTGTTCGTGCTTGCCTCTCTC
CCCCTCAAATCGTGCTTGACTGTTCGGTTGGGTGCGTATGTGTGTGTCGT
GTTTTGATTGGTGTGGTGTTTCTCGATCCAGGGATTGATTCACGTTCGTG
ATTTTCGGAACAAAATTCCCACGTCACCGAATAAGTCACGCATCCAGCCT
GTGAAGTACCTACCACAACATTCGACAGCACCAACAAGGCCTCGGACAGC
GAGATAGAAAGTAGCACGACTGGCCTGTCGCATGACTGGCCTGGCGGCTG
TCTTCTCATGCGCGCGACCGGACACCGGAGACCGCCGACGCTGTTTGCGT
GCGGTGGGAACGAATGTGCCATCATGTGCCATCATAGCTCCTCTTCATCC
TCTCCCCTCCCACACACACACGGCGCGGCGCAATCAAAACAGTCCCCGAT
TGGACGGTGGAGGGGCTACTGCCTGGCCGTGTCCTCCTGCGCCTACGTCT
GCGCCGTCCTCAGCGAGTCGGAGGACGACATTCTCTTCGCCGAGATGGGA
GAGACGGCAGCGGCCGCGGCTGCTGGCTTGGCGGGAGGGGGGCAGGTGCG
TCTGCGCTTGACGTGGGCCTGACGTGGCTCCTGGTCTAGCGGCTTTAGTG
CTTGCGGCGGTGCAGCTCCTTCTTTGCTCTGCCTTCTGTGTCACGGCAGA
GCGCAGGCAATGAGCGATCGTGAGAGAAGGATCGGTTAACGCACCGCTGG
TGCTTCCGGGCTCCAAACGAAATCGCCGTGCGTATCCCATCACCACGTAT
CACACCGGACGTGTTTTGCGTATCGCGTGCGCGTTTGTTGTCATCCCCTT
GACCGGGCACTCCGTCTGCTCCTCACGGTCTCGAGCAGTGCGTGTTGAGT
CGAGCCAGGATTACACAGGAAGGTCGACACCGGAGTTTTTTTTTTTTTGT
CTTGTCACTCCTTCTGCGGTTGGTCCCTCAGTCGTTGTCGTGAAGGGAGC
TCAGCAACCCAGTTTCCCTCGAAAGCCTCCGGTCCGAAATGCGCTTACCC
AGCACGAACGGGTCGCTCTCCGCCTTGCGTGCTGTTGGGGAGACACACGG
ATCATCACGCCGCATCGGCGCTCAAACTCTTACTCTGCGTCGAGCTGTCA
TGAGTGTTAGGCGGTTGCCGACTGCACCATCGAGGCGCGACCGGTTCGTG
GTTTGTCCATGCATTCATTTGTGTTGCTCTCAAGCGTGCGTGTCTGTACG
CATACGCACCCTGCTTGCTGCTGCGTGTCTGTCTTGTCTTTGCAGGGGGC
CGGCGGACCGCCATCCTCGTCGTTGGGGGCCGTGGGCAACGTTGTCGGGG
CGGCCATCGGCGGGGTGTCCCAGGCAGTCAACTCGGCGGCCACGACAGCA
GAGACAGGTCCGGTCGGGTTCGAGTCCTGTGCCGGTGGCGCTCGGTTGAG
CTCGTCGTTTTTTTGTGGAAGGATTTCTCGTCTTGTTTCGCACGTAGTGA
TCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTGG
GGAACGAATCTTGGTGCGGATGCTTTGACTTTCACTTTCCGTCGGGTAAT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
CATCGTGACGTCTGGAGTGTCCAAGGCGACTTGATGTCCAACCTTTACCC
GTTGCCGCTGTGTCTTGTTCTGATGTTCCAAAGGGGCGTTTGGCCTTGTA
TCGTTCTGTTTGGAGCAGCGCCGACGTTGGTTGGGAACCCCGCCGACTCT
CACCTGGCACACCAGTGTGGCAATCGCGTCGCCTAATTTTGCGCGGCACG
CAGAGTTGTTGCTTCTTCTTCTGCTGCTTCTGCTGCTTCTCCACCACCCA
CGCCCCTCTCGTTTCTGCGTGTCGCCTGACGTCTCACCCGTCGACTTCAC
CGATCAACCCCGGAACCCTGCATCCAACTTCCACATCTTACGTGCCCCCT
TTGAAGCACACCTTGCACGGAGCTGATCCCCCCTTCCTCCCCTTCCCCCT
CGCCGTAAACGCCTGCACCTGTAGCTACCGCGGGCGTGGTGCGTGCGGTG
GGATCGCAGAGCAACATTATCGGCCCCTCCCACGCCATCTCCGCGGCGCT
GACATCGCTCAAGGGCGCCGCCCGTCGAGTGCGCAAGGCCTCGTCCTCCT
CGGGACGGGGAGACGGTTACGGTGTCGGAAACGTTTATGGCAGCGGTGGC
GGCAGCCTGGCCACTGGAGCCGGTGGCCTTGGCGGCGGTGCCGCCACCGC
AGGGGTAAGAGCTGCGGCAGGGGTGCCGACGATGGCGACGGCGGCGGAGG
AGGACTTGGTCAAGAACGACGTCGACTACCTGGGTCGGGAAGAACAAGCC
GGGGGGCGGGGTAATCGCTTCGATCCGGCCACCACCGGCGAGGGCGGATG
GAGTCAGGGCGGATGGCCAGGAGGGGGACGAGGGGGACGAGGAGGAGGAG
CAGCAGGAGGAAGAGGAGGAGGAGCGGAATCCTGGTTTGCTGCCGAAGCT
GCCGCTGCCGCTGCTGTGGTCGGGGAGTGGACGGGCTCGGTGTTTGGGGA
GGAGGCTGAGCAGTACGGGGTGATGCTCGAGGCCATGCTACGCGGCGCGG
TGGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7631:333..4737+

>mRNA_H-canaliculatus_M_contigs7631.1.1 ID=mRNA_H-canaliculatus_M_contigs7631.1.1|Name=mRNA_H-canaliculatus_M_contigs7631.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=975bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7631:333..4737+ (Hapterophycus canaliculatus Oshoro7m male)
GAACGGCCCTCCATCGTCGACGCCTGTGACGCCCTCCGCGGTGGCGGTGT
GTCGCCTGTTTTCCGACGTCACGGAGCGCTACCGCCCTCTGCGGGACCCC
CTGAAGCAGCTGCGCTTCGCGAGACGCGTCCAGGAGCCCGTCCTTCGATC
GGTCGATTTCGACGGCGAGGCGGGGGGGGCGGGGGGAAGCGGGGGAGTAA
CCTCGTCGGCGGACGGCATGGCGGCGACTTGGGCGGCCGCTCTTGGCGCG
GCGATGCTTGCGGCAGGACCCGGTGGGGAAGAGGAAGACGACAAGTCCCC
GATTGGACGGTGGAGGGGCTACTGCCTGGCCGTGTCCTCCTGCGCCTACG
TCTGCGCCGTCCTCAGCGAGTCGGAGGACGACATTCTCTTCGCCGAGATG
GGAGAGACGGCAGCGGCCGCGGCTGCTGGCTTGGCGGGAGGGGGGCAGGG
GGCCGGCGGACCGCCATCCTCGTCGTTGGGGGCCGTGGGCAACGTTGTCG
GGGCGGCCATCGGCGGGGTGTCCCAGGCAGTCAACTCGGCGGCCACGACA
GCAGAGACAGCTACCGCGGGCGTGGTGCGTGCGGTGGGATCGCAGAGCAA
CATTATCGGCCCCTCCCACGCCATCTCCGCGGCGCTGACATCGCTCAAGG
GCGCCGCCCGTCGAGTGCGCAAGGCCTCGTCCTCCTCGGGACGGGGAGAC
GGTTACGGTGTCGGAAACCCGGGGGGCGGGGTAATCGCTTCGATCCGGCC
ACCACCGGCGAGGGCGGATGGAGTCAGGGCGGATGGCCAGGAGGGGGACG
AGGGGGACGAGGAGGAGGAGCAGCAGGAGGAAGAGGAGGAGGAGCGGAAT
CCTGGTTTGCTGCCGAAGCTGCCGCTGCCGCTGCTGTGGTCGGGGAGTGG
ACGGGCTCGGTGTTTGGGGAGGAGGCTGAGCAGTACGGGGTGATGCTCGA
GGCCATGCTACGCGGCGCGGTGGAG
back to top