mRNA_H-canaliculatus_M_contigs76305.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76305.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76305.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76305.1.1 vs.
Match: ankyrin-1-like (n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71AF2B)

HSP 1 Score: 51.2 bits (121), Expect = 3.810e-6
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   13 RTPLHFACEAGSPECVKELLRAAASPNVSDQDGRTPLHF 129
            R PLH A E G  + V+ LLR  ASPN++D DG TPLHF
Sbjct:  224 RAPLHLALEHGRQKVVELLLRRGASPNLTDSDGSTPLHF 262
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BLAST of mRNA_H-canaliculatus_M_contigs76305.1.1 vs.
Match: CASKIN2 (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812VLX2_9DINO)

HSP 1 Score: 47.4 bits (111), Expect = 7.030e-5
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   16 TPLHFACEAGSPECVKELLRAAASPNVSDQDGRTPLHFGERVG 144
            TP+ FA + GS ECV+ LL+A A  N  ++DG + LHF  R G
Sbjct:  130 TPIMFAAQKGSAECVQRLLQARAEVNAVEEDGWSALHFASREG 172
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BLAST of mRNA_H-canaliculatus_M_contigs76305.1.1 vs.
Match: ASAP1 (protein (Fragment) n=1 Tax=Odontophorus gujanensis TaxID=886794 RepID=A0A7K9YT00_9GALL)

HSP 1 Score: 47.4 bits (111), Expect = 8.790e-5
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:   16 TPLHFACEAGSPECVKELLRAAASPNVSDQDGRTPLHFGERV 141
            TPLH+ C    PEC+K LL+A AS N+++Q G T L   +R 
Sbjct:  506 TPLHYCCFHNKPECLKLLLKAKASTNITNQAGETALDIAKRT 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76305.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
ankyrin-1-like3.810e-658.97n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UP... [more]
CASKIN27.030e-548.84protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
ASAP18.790e-547.62protein (Fragment) n=1 Tax=Odontophorus gujanensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76305contigH-canaliculatus_M_contigs76305:92..238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog246437.XP_006150289.1
Preferred nameASB10
PFAMsAnk,Ank_2,Ank_3,Ank_4,SOCS_box
Model size147
Max annot lvl33208|Metazoa
KEGG koko:K10326,ko:K10332,ko:K10340
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons1
Evalue1.07e-08
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,38GZ5@33154|Opisthokonta,3BK6Z@33208|Metazoa,3CUYM@33213|Bilateria,480JD@7711|Chordata,48VWX@7742|Vertebrata,3JBTQ@40674|Mammalia,35A5U@314146|Euarchontoglires
DescriptionAnkyrin repeat and SOCS box
Cds size147
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.5253317-CDS-H-canaliculatus_M_contigs76305:91..2381696854101.5253317-CDS-H-canaliculatus_M_contigs76305:91..238Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76305 92..238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76305.1.1prot_H-canaliculatus_M_contigs76305.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76305 92..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76305.1.1

>prot_H-canaliculatus_M_contigs76305.1.1 ID=prot_H-canaliculatus_M_contigs76305.1.1|Name=mRNA_H-canaliculatus_M_contigs76305.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=49bp
CAPQRTPLHFACEAGSPECVKELLRAAASPNVSDQDGRTPLHFGERVGS
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mRNA from alignment at H-canaliculatus_M_contigs76305:92..238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76305.1.1 ID=mRNA_H-canaliculatus_M_contigs76305.1.1|Name=mRNA_H-canaliculatus_M_contigs76305.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76305:92..238+ (Hapterophycus canaliculatus Oshoro7m male)
TGTGCCCCTCAGCGCACCCCGTTGCACTTTGCCTGCGAGGCCGGGTCGCC
GGAGTGCGTCAAGGAGCTCCTGCGGGCGGCGGCGTCGCCGAACGTGTCCG
ATCAGGATGGGAGGACGCCGCTGCACTTCGGTGAGCGGGTGGGGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76305:92..238+

>mRNA_H-canaliculatus_M_contigs76305.1.1 ID=mRNA_H-canaliculatus_M_contigs76305.1.1|Name=mRNA_H-canaliculatus_M_contigs76305.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76305:92..238+ (Hapterophycus canaliculatus Oshoro7m male)
TGTGCCCCTCAGCGCACCCCGTTGCACTTTGCCTGCGAGGCCGGGTCGCC
GGAGTGCGTCAAGGAGCTCCTGCGGGCGGCGGCGTCGCCGAACGTGTCCG
ATCAGGATGGGAGGACGCCGCTGCACTTCGGTGAGCGGGTGGGGTCG
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