mRNA_H-canaliculatus_M_contigs76285.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76285.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76285.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: Similar (to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.570e-11
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 EADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            EADAARAEGTI+YAVGVGSGP    LLAI G+E+N+F VDNF EL
Sbjct:  189 EADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 233
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.860e-11
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 EADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            EADAARAEGTI+YAVGVGSGP    LLAI G+E+N+F VDNF EL
Sbjct:  206 EADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 250
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BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: Glycin-rich (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.870e-11
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 EADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            EADAARAEGTI+YAVGVGSGP    LLAI G+E+N+F VDNF EL
Sbjct:  196 EADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 240
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.820e-10
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    4 EADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            EADAARAEGTI+YAVGVGS P   TLLAI G+E+N+F VDNF EL
Sbjct:  226 EADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEEL 270
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.910e-10
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    4 EADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            EADAARAEGTIVYAVGVGSGP    LL IAG++SN F VD+F EL
Sbjct:  176 EADAARAEGTIVYAVGVGSGPTESVLLDIAGDDSNKFSVDDFDEL 220
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BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: Similar (to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.050e-8
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 AEADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            AEADAAR EGTIVYAVGVG+GP    LL I G E+N+F VD F EL
Sbjct:  175 AEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDEL 220
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BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: COL6A3 (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YT76_BRALA)

HSP 1 Score: 52.4 bits (124), Expect = 1.640e-6
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 AEADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAELGS 144
            A A+AAR EG  V+AVG+GSG DY TLL IAG    I  +DNF +L S
Sbjct: 3380 APAEAARKEGITVFAVGIGSGVDYATLLQIAGISDRILQIDNFVDLTS 3427
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: COL6A3 (protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YT82_BRALA)

HSP 1 Score: 52.4 bits (124), Expect = 1.640e-6
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 AEADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAELGS 144
            A A+AAR EG  V+AVG+GSG DY TLL IAG    I  +DNF +L S
Sbjct: 4188 APAEAARKEGITVFAVGIGSGVDYATLLQIAGISDRILQIDNFVDLTS 4235
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: VWFA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 5.730e-6
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    4 EADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            EADAAR EGTIVYAVGVG      TLL+I G+ +N+F   NF EL
Sbjct:  188 EADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTEL 232
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Match: uncharacterized (protein LOC109474115 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZJS4_BRABE)

HSP 1 Score: 48.5 bits (114), Expect = 3.780e-5
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 AEADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAEL 138
            A A++AR EG  V+AVG+GSG DY TLL IAG +  I  ++NF +L
Sbjct: 3456 APAESARKEGIAVFAVGIGSGVDYATLLKIAGIDDRILQINNFNDL 3501
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76285.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Similar2.570e-1175.56to collagen, partial n=2 Tax=Ectocarpus siliculosu... [more]
VWFA2.860e-1175.56domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Glycin-rich2.870e-1175.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
VWFA1.820e-1075.56domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
VWFA8.910e-1075.56domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Similar1.050e-869.57to integrin alpha Hr1-like n=1 Tax=Ectocarpus sili... [more]
COL6A31.640e-658.33protein n=1 Tax=Branchiostoma lanceolatum TaxID=77... [more]
COL6A31.640e-658.33protein n=1 Tax=Branchiostoma lanceolatum TaxID=77... [more]
VWFA5.730e-662.22domain-containing protein n=1 Tax=Ectocarpus silic... [more]
uncharacterized3.780e-554.35protein LOC109474115 n=1 Tax=Branchiostoma belcher... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76285contigH-canaliculatus_M_contigs76285:111..263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FHN6
PFAMsCollagen
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.7e-12
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size153
COG categoryD
BRITEko00000,ko00001,ko00536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.1319628-CDS-H-canaliculatus_M_contigs76285:110..2631696854101.1319628-CDS-H-canaliculatus_M_contigs76285:110..263Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76285 111..263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76285.1.1prot_H-canaliculatus_M_contigs76285.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76285 111..263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76285.1.1

>prot_H-canaliculatus_M_contigs76285.1.1 ID=prot_H-canaliculatus_M_contigs76285.1.1|Name=mRNA_H-canaliculatus_M_contigs76285.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=51bp
AEADAARAEGTIVYAVGVGSGPDYFTLLAIAGNESNIFYVDNFAELGSEF
*
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mRNA from alignment at H-canaliculatus_M_contigs76285:111..263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76285.1.1 ID=mRNA_H-canaliculatus_M_contigs76285.1.1|Name=mRNA_H-canaliculatus_M_contigs76285.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76285:111..263+ (Hapterophycus canaliculatus Oshoro7m male)
GCCGAGGCCGACGCCGCTCGGGCGGAAGGTACCATCGTTTATGCCGTCGG
GGTGGGCAGCGGACCGGACTATTTCACGCTCCTGGCCATCGCAGGAAACG
AGAGCAATATATTCTACGTTGACAACTTTGCGGAGCTCGGCAGTGAGTTT
TGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76285:111..263+

>mRNA_H-canaliculatus_M_contigs76285.1.1 ID=mRNA_H-canaliculatus_M_contigs76285.1.1|Name=mRNA_H-canaliculatus_M_contigs76285.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76285:111..263+ (Hapterophycus canaliculatus Oshoro7m male)
GCCGAGGCCGACGCCGCTCGGGCGGAAGGTACCATCGTTTATGCCGTCGG
GGTGGGCAGCGGACCGGACTATTTCACGCTCCTGGCCATCGCAGGAAACG
AGAGCAATATATTCTACGTTGACAACTTTGCGGAGCTCGGCAGTGAGTTT
TGA
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