mRNA_H-canaliculatus_M_contigs7628.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7628.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7628.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7628.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4G0_9PHAE)

HSP 1 Score: 426 bits (1094), Expect = 1.920e-136
Identity = 261/381 (68.50%), Postives = 289/381 (75.85%), Query Frame = 1 
Query:    1 QGAPACTGSALCSVLANLAMNETFRGSFAEPFLSKSAGSG---GRTSTVAAALVLVAGDTKADRSEARTVALAALVNA------LQAATFSAGGLSLALATLSLGGEDRARYAPPLVAARSAGLLARLSPHPGALEAMVCPGVFDRIVQATVRSSTLGGDLYTPTAPAHHKEDTTVDASMASAAK----TAAHAIERENLVRTLGSILRSKAPPTPPAAGYRTHAAASPAPSSNVPAPLVVVAKDSRAYLVDYAEKAKLAAALVSFLPPAREDGVEGVTAASAPLRPEWRAPPAVTANVCACLLHLLDSEPSGHIAKQVVGAGGIPRLVSLFANSGVEGGGLSARTNAAICLAKLAREPLHKQMIAELRGMEMLVQAGSGL 1104
            +GAPA TG ALC+VLANLAMNE FR SFA+PFLSKS G G   G  STVAA LVLVA D KADRSEAR+VALAALVNA      +Q AT +AGGL+ ALATLSL G+DR  + PPLVAARSA LLARLSP P ALEAM  PGV DRI+QATVRSSTLGGDLYT    A   +D   D + A+A      +AA+A ERENLVR LGSILRSK PP   AA        SPAPSSNVP   V   KD++  +V  A + KL+ AL+SFLPPAREDG EGVT  S  LRP+W APPAVT NVC CLLHLLD E SGHIA Q+V AGGIPRL+SLFANSG EGG LSARTNAAICLAKLAR+P+HKQMIA+LRGMEMLVQAG+GL
Sbjct:  752 KGAPASTGFALCNVLANLAMNENFRESFAKPFLSKSMGGGVDSGGVSTVAAVLVLVARDMKADRSEARSVALAALVNACLHNHSVQKATLAAGGLAFALATLSLEGKDRVLHVPPLVAARSAALLARLSPLPEALEAMARPGVVDRIIQATVRSSTLGGDLYTIVTRAKRADDEADDLAAAAAXXXXXTSAANATERENLVRVLGSILRSK-PPAHTAACDDARRLGSPAPSSNVPG--VTTTKDAKDKIVTTAGQLKLSEALISFLPPAREDGTEGVTTTSVSLRPKWLAPPAVTGNVCVCLLHLLDGEGSGHIATQIVDAGGIPRLISLFANSGGEGGALSARTNAAICLAKLARDPIHKQMIADLRGMEMLVQAGAGL 1129
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BLAST of mRNA_H-canaliculatus_M_contigs7628.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU55_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 2.440e-119
Identity = 216/321 (67.29%), Postives = 241/321 (75.08%), Query Frame = 1 
Query:  172 KADRSEARTVALAALVNA------LQAATFSAGGLSLALATLSLGGEDRARYAPPLVAARSAGLLARLSPHPGALEAMVCPGVFDRIVQATVRSSTLGGDLYTPTAPAHHKEDTTVDASMAS----AAKTAAHAIERENLVRTLGSILRSKAPPTPPAAGYRTHAAASPAPSSNVPAPLVVVAKDSRAYLVDYAEKAKLAAALVSFLPPAREDGVEGVTAASAPLRPEWRAPPAVTANVCACLLHLLDSEPSGHIAKQVVGAGGIPRLVSLFANSGVEGGGLSARTNAAICLAKLAREPLHKQMIAELRGMEMLVQAGSGL 1104
            +A RSEAR+VALAALVNA      +Q AT +AGGL+ ALATLSL G+DR  + PPLVAARSAGLLARLSP P ALEAM  PGV DRI+QATVRSSTLGGDLYT    A   +D   D + A+    AA +AA+A ERENLVR LGSILRSK PP   AA        SPAPSSNVP   V    D +  +V  A + KLA AL+SFLPPAREDG EGVT  S  LRP+W APPAVT NVC CLLHLL+ E SGHIA Q+V AGGIPRL+SLFANSG EGG LSARTNAAICLAKLAR+P+HKQMIA+LRGMEMLVQ G+GL
Sbjct:    3 QAGRSEARSVALAALVNACLHNHSVQKATLAAGGLAFALATLSLEGKDRVLHVPPLVAARSAGLLARLSPLPEALEAMARPGVVDRIIQATVRSSTLGGDLYTNATRAKRVDDAADDLAAAAETEAAATSAANAAERENLVRVLGSILRSK-PPVHTAACDDARRLGSPAPSSNVPG--VTTTNDGKDKIVTTARQLKLAEALISFLPPAREDGTEGVTTTSVSLRPKWLAPPAVTGNVCVCLLHLLNGEGSGHIATQIVDAGGIPRLISLFANSGGEGGALSARTNAAICLAKLARDPMHKQMIADLRGMEMLVQVGAGL 320
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BLAST of mRNA_H-canaliculatus_M_contigs7628.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z620_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.320e-19
Identity = 67/122 (54.92%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:  745 ALVSFLPPAREDGVEGVTAASAPLRPEWRAPPAVTANVCACLLHLLDSEPSGHIAKQ--VVGAGGIPRLVSLFANSGVEGGGLSARTNAAICLAKLAREPLHKQMIAELRGMEMLVQAGSGL 1104
            ALVSFLPPAR      VT  S  L P WRAP AV  NVC  LLHL+     G       V  AGGI RL+ LFANS  E G   AR NAAIC+A+LAR+   +  I  LRGMEMLVQAG  L
Sbjct:  778 ALVSFLPPARRGAGGAVTRDSVALAPAWRAPAAVAGNVCGALLHLIGDGSGGSXXXXXXVAEAGGIERLLCLFANS--EDG--PARKNAAICVARLARDCALRPRIEALRGMEMLVQAGRAL 895
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7628.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.920e-13668.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.440e-11967.29protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.320e-1954.92protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7628contigH-canaliculatus_M_contigs7628:2205..5225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1113
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-16_000280.1
Cds size1113
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7628.2.1prot_H-canaliculatus_M_contigs7628.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7628 2205..5225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.9912484-CDS-H-canaliculatus_M_contigs7628:2204..22671696854100.9912484-CDS-H-canaliculatus_M_contigs7628:2204..2267Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7628 2205..2267 -
1696854101.005294-CDS-H-canaliculatus_M_contigs7628:2807..29421696854101.005294-CDS-H-canaliculatus_M_contigs7628:2807..2942Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7628 2808..2942 -
1696854101.0259805-CDS-H-canaliculatus_M_contigs7628:3181..36761696854101.0259805-CDS-H-canaliculatus_M_contigs7628:3181..3676Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7628 3182..3676 -
1696854101.0377002-CDS-H-canaliculatus_M_contigs7628:4056..42501696854101.0377002-CDS-H-canaliculatus_M_contigs7628:4056..4250Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7628 4057..4250 -
1696854101.0503068-CDS-H-canaliculatus_M_contigs7628:4598..46501696854101.0503068-CDS-H-canaliculatus_M_contigs7628:4598..4650Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7628 4599..4650 -
1696854101.0605423-CDS-H-canaliculatus_M_contigs7628:5051..52251696854101.0605423-CDS-H-canaliculatus_M_contigs7628:5051..5225Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7628 5052..5225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7628.2.1

>prot_H-canaliculatus_M_contigs7628.2.1 ID=prot_H-canaliculatus_M_contigs7628.2.1|Name=mRNA_H-canaliculatus_M_contigs7628.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=371bp
QGAPACTGSALCSVLANLAMNETFRGSFAEPFLSKSAGSGGRTSTVAAAL
VLVAGDTKADRSEARTVALAALVNALQAATFSAGGLSLALATLSLGGEDR
ARYAPPLVAARSAGLLARLSPHPGALEAMVCPGVFDRIVQATVRSSTLGG
DLYTPTAPAHHKEDTTVDASMASAAKTAAHAIERENLVRTLGSILRSKAP
PTPPAAGYRTHAAASPAPSSNVPAPLVVVAKDSRAYLVDYAEKAKLAAAL
VSFLPPAREDGVEGVTAASAPLRPEWRAPPAVTANVCACLLHLLDSEPSG
HIAKQVVGAGGIPRLVSLFANSGVEGGGLSARTNAAICLAKLAREPLHKQ
MIAELRGMEMLVQAGSGLAA*
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mRNA from alignment at H-canaliculatus_M_contigs7628:2205..5225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7628.2.1 ID=mRNA_H-canaliculatus_M_contigs7628.2.1|Name=mRNA_H-canaliculatus_M_contigs7628.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3021bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7628:2205..5225- (Hapterophycus canaliculatus Oshoro7m male)
CAGGGCGCACCAGCATGCACCGGCTCCGCACTATGCAGCGTACTGGCAAA
TCTTGCTATGAACGAAACGTTCCGCGGAAGCTTCGCGGAACCGTTCTTAT
CCAAGTCGGCGGGAAGCGGGGGGCGTACGTCTACGGTGGCTGCTGCTCTG
GTTCTCGTTGCGGGGGACACGAAGGTGTTTGGCTTAGATTCCGATTGGCG
GCACCGTCCTACTGCCGCTACTTGTCAACCTTTCGAGCCTGTAACGGTCC
AGCCGAGGAGCTCGTCTTCACGAGAAGATAGGTAGTGGACGGGTAGGAGC
GGTGACCAGGCATGCGATGGGGCTAGGCAGGCCAAGGACGTTTCTCTCGA
GACGTACGAGAAAGGTGGTGCAAACAAGGCACCTTCAACCATGCGCCTCA
TTTTGATTTTTTTGCGGTAAGTATTTCGCGAGAACCTTGTGCCCTTTCTC
CTCAAATTTGGACGAGCAGATCGGACACTTCACACTTGGCGCGTTTGATA
AGGCGGACTTAGACGTTCGGATCCACCACCACCAAACATTTTCGCACGCG
TCCATCGTGGACTCACGATTGGTAGGCCGACCGTTCGGAGGCAAGGACTG
TGGCACTCGCGGCTCTCGTCAACGCCTGTCTGCACAACCTCAGGCAAGAG
AAACTTATCGCAGGATAAGTCAAAAGTCCGCATCGAAACGCTACTTATTC
ATATCGTGACCTTGAGCTCCGACTCTCGACCCATCCAAAATTGTAAGTAT
TCGCCGAGAACCCACGCTCGAAATCGACCGCACGGGCCCCAAGACCTTCC
CCAGAAAATTTCCACATCCGCTACTGGATTGATGGGGTCGTGGATATTGA
CGTACGATGTGCTCTATGCGCCGCAAATACTAAAGGCACGAAGGCAATCA
CCACGGACCGCCCTTCGTTCCCACCCCCTCCTTCGAACACACCAACAACC
GACGCCCTTGGCGTTTTCTGCAGAGTACAGGCGGCGACGTTCTCAGCAGG
AGGGTTGTCCCTTGCCCTGGCGACGCTGTCGCTTGGGGGAGAGGATCGCG
CGCGGTACGCCCCTCCTCTGGTGGCGGCAAGGTCGGCCGGGTTGCTGGCG
CGTTTGTCCCCACACCCTGGGGCACTCGAAGCCATGGTTTGCCCGGGTGT
TTTTGACAGAATTGTTCAGGTGTGCTACCCCTTGCGGATTTCGGTTCGTC
TACCTCAGCCGGGGACCTTTGATTCCTCTTCACCGACTTCGTGGGCTGGT
TCTTGTCTGTGTCTGCATGCGCGAATGAGTGTAGATCAAGGCGGAAAATC
TTTGATACGGGGAGGTGGTTACCGTTTCGACAAAGAAAAGGGTAGCGTTC
GATTGTCGCAGAGGTATCACCATGGGGTTGAACGCGTTATTGCACGATGG
CGAGGATCGAATGGACTCCTTGCATGCGTGCACAGGTCCACCTTTCGGAG
ACCCCTTAAATGTTCCGGTCGATTAGTAGTCAGTATGGCTCAGCCTCTCC
TTCGTGCACCTGGTTCGCTGCGTCCTTCTGCCCCCCCTCCCTGAACAAGG
CTACTGTACGGAGCTCAACGCTAGGGGGTGACCTTTACACACCCACCGCG
CCAGCGCACCACAAGGAGGACACCACCGTCGATGCAAGCATGGCATCAGC
AGCAAAAACCGCCGCCCATGCCATCGAACGAGAAAACCTTGTTCGTACCC
TGGGTTCTATCCTACGTTCCAAAGCTCCCCCGACTCCCCCGGCTGCGGGT
TACCGCACGCACGCCGCTGCCTCCCCAGCGCCCTCGTCAAACGTGCCAGC
GCCCTTGGTGGTCGTCGCCAAAGACTCTAGGGCTTACTTGGTAGATTACG
CGGAAAAGGCAAAGCTCGCGGCGGCATTGGTCTCCTTCCTGCCTCCAGCC
CGAGAGGATGGGGTGGAGGGGGTGACGGCAGCGTCAGCTCCATTGAGGCC
GGAGTGGCGTGCGCCTCCCGCAGTCACGGCGAACGTATGCGCCTGCCTTC
TGCATCTGTTGGACAGCGAGCCTTCCGGTCACATCGCCAAGCAGGTATCT
ACAGAAATACTTCGACACACTCACCCTTGTTTTTTCTCTGTGGGCGGTGC
TAGGGGGGAAAGGGGGATGCGGAACACCTTGACTACCGCTTGACTTCGAA
AGTACGGCCTTTGAGACTTTCGCCACTCTTATGGGGCATTAATCTCTCCA
CGATCAGCCTCAACGCGGCGTTTGTCGGGTGCATCCTGTGCGTGCTTCCT
ATCCACAACATTCCTGCCATACCATTGTGATAGGTGGTGGGTGCGGGAGG
GATACCCCGCCTTGTTTCTCTCTTCGCCAACTCGGGAGTGGAGGGCGGTG
GTCTATCCGCGCGCACGAATGCCGCCATCTGCCTTGCAAAGCTTGCACGC
GAACCACTGCACAAACAGGTAAAACTTTTCCCCTTCATGGCGCACACAGC
GCCGTTCTCCGGCAACATACGCGCGCGTTCCCCGCGCAGCTGGCCGGTAG
CCCTTGACAGAATTCGACGGCGTTACGACCGCAAAGTTCCGGCGTCGTCG
AAAGGATGTTGAAGGAGACATCCCAATAGATCGGCTAGTGATCCTGTTTG
GGAGAGGACCCCTGCCGAGAGGATAGGTCGAACACCCTGTTGTCTCGCGG
TTCTCTAGCGTAGACGGTCTTTCACGCGCCGTTCATCGAAGACGCAGTGT
CGTGTCTTTTGCCAGGAAAGCACGACGCAACCTAGCGGATTAAGTCGAGG
GGCGAATAAAACTCTGCTACGGAAATACTTCACACATGCTTCACACGAGA
TGTCATCACTCATTACGCACTCACTTAAATTGAAGGTTATCGGAGGGATG
GACGCACGACCGAGAGGGAAAAATGCGTTTTCATTCACAATTTTATTCCC
CCCCCCTCCTCTCCCTCGTTACTATCCTACCTTCGGGTTTCTTGGTATCT
CGGCAAAGATGATAGCTGAGCTTCGCGGCATGGAAATGCTTGTCCAAGCT
GGTTCTGGGTTGGCCGCATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7628:2205..5225-

>mRNA_H-canaliculatus_M_contigs7628.2.1 ID=mRNA_H-canaliculatus_M_contigs7628.2.1|Name=mRNA_H-canaliculatus_M_contigs7628.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1113bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7628:2205..5225- (Hapterophycus canaliculatus Oshoro7m male)
CAGGGCGCACCAGCATGCACCGGCTCCGCACTATGCAGCGTACTGGCAAA
TCTTGCTATGAACGAAACGTTCCGCGGAAGCTTCGCGGAACCGTTCTTAT
CCAAGTCGGCGGGAAGCGGGGGGCGTACGTCTACGGTGGCTGCTGCTCTG
GTTCTCGTTGCGGGGGACACGAAGGCCGACCGTTCGGAGGCAAGGACTGT
GGCACTCGCGGCTCTCGTCAACGCCTTACAGGCGGCGACGTTCTCAGCAG
GAGGGTTGTCCCTTGCCCTGGCGACGCTGTCGCTTGGGGGAGAGGATCGC
GCGCGGTACGCCCCTCCTCTGGTGGCGGCAAGGTCGGCCGGGTTGCTGGC
GCGTTTGTCCCCACACCCTGGGGCACTCGAAGCCATGGTTTGCCCGGGTG
TTTTTGACAGAATTGTTCAGGCTACTGTACGGAGCTCAACGCTAGGGGGT
GACCTTTACACACCCACCGCGCCAGCGCACCACAAGGAGGACACCACCGT
CGATGCAAGCATGGCATCAGCAGCAAAAACCGCCGCCCATGCCATCGAAC
GAGAAAACCTTGTTCGTACCCTGGGTTCTATCCTACGTTCCAAAGCTCCC
CCGACTCCCCCGGCTGCGGGTTACCGCACGCACGCCGCTGCCTCCCCAGC
GCCCTCGTCAAACGTGCCAGCGCCCTTGGTGGTCGTCGCCAAAGACTCTA
GGGCTTACTTGGTAGATTACGCGGAAAAGGCAAAGCTCGCGGCGGCATTG
GTCTCCTTCCTGCCTCCAGCCCGAGAGGATGGGGTGGAGGGGGTGACGGC
AGCGTCAGCTCCATTGAGGCCGGAGTGGCGTGCGCCTCCCGCAGTCACGG
CGAACGTATGCGCCTGCCTTCTGCATCTGTTGGACAGCGAGCCTTCCGGT
CACATCGCCAAGCAGGTGGTGGGTGCGGGAGGGATACCCCGCCTTGTTTC
TCTCTTCGCCAACTCGGGAGTGGAGGGCGGTGGTCTATCCGCGCGCACGA
ATGCCGCCATCTGCCTTGCAAAGCTTGCACGCGAACCACTGCACAAACAG
ATGATAGCTGAGCTTCGCGGCATGGAAATGCTTGTCCAAGCTGGTTCTGG
GTTGGCCGCATAA
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