mRNA_H-canaliculatus_M_contigs76273.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76273.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76273.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76273.1.1 vs.
Match: Transposase ((Fragment) n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U2V3_9GAMM)

HSP 1 Score: 72.8 bits (177), Expect = 3.140e-14
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 MATVNTASIREDIARVEQDIARLSEAGKVSDESRMLFNTLLMIV 132
            MA+VNT+SIRE+IA+VEQ+IARLS AGKVSDESRMLFNTLLMIV
Sbjct:    1 MASVNTSSIREEIAQVEQEIARLSAAGKVSDESRMLFNTLLMIV 44
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BLAST of mRNA_H-canaliculatus_M_contigs76273.1.1 vs.
Match: hypothetical (protein n=1 Tax=Sulfurivermis fontis TaxID=1972068 RepID=UPI000FDAC630)

HSP 1 Score: 45.4 bits (106), Expect = 3.720e-5
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 MATVNTASIREDIARVEQDIARLSEAGKVSDESRMLFNTLLMIV 132
            MA+++ AS+RE+IAR++ D  +LS+ GK+  E++ LF +LL+IV
Sbjct:    1 MASLDKASVREEIARLKADFDQLSQQGKIPPETKALFKSLLLIV 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76273.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Transposase3.140e-1486.36(Fragment) n=1 Tax=Granulosicoccus sp. TaxID=19435... [more]
hypothetical3.720e-547.73protein n=1 Tax=Sulfurivermis fontis TaxID=1972068... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76273contigH-canaliculatus_M_contigs76273:394..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.9626403-CDS-H-canaliculatus_M_contigs76273:393..5251696854100.9626403-CDS-H-canaliculatus_M_contigs76273:393..525Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76273 394..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76273.1.1prot_H-canaliculatus_M_contigs76273.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76273 394..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76273.1.1

>prot_H-canaliculatus_M_contigs76273.1.1 ID=prot_H-canaliculatus_M_contigs76273.1.1|Name=mRNA_H-canaliculatus_M_contigs76273.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
MATVNTASIREDIARVEQDIARLSEAGKVSDESRMLFNTLLMIV
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mRNA from alignment at H-canaliculatus_M_contigs76273:394..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76273.1.1 ID=mRNA_H-canaliculatus_M_contigs76273.1.1|Name=mRNA_H-canaliculatus_M_contigs76273.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76273:394..525+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAACCGTCAACACAGCATCCATCAGAGAGGATATCGCCCGCGTCGA
GCAGGACATAGCGCGCCTGAGCGAGGCAGGTAAGGTATCTGATGAGAGCC
GGATGCTCTTCAATACCCTGTTGATGATTGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76273:394..525+

>mRNA_H-canaliculatus_M_contigs76273.1.1 ID=mRNA_H-canaliculatus_M_contigs76273.1.1|Name=mRNA_H-canaliculatus_M_contigs76273.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76273:394..525+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAACCGTCAACACAGCATCCATCAGAGAGGATATCGCCCGCGTCGA
GCAGGACATAGCGCGCCTGAGCGAGGCAGGTAAGGTATCTGATGAGAGCC
GGATGCTCTTCAATACCCTGTTGATGATTGTC
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